lrp-ftsK



Position: 340-459, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.C) Reactivity: 0.5C Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.A) Reactivity: 1A Position: 38 (position.label in template: 38.A) Reactivity: 0.5A Position: 39 (position.label in template: 39.C) Reactivity: 0.5C Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.A) Reactivity: 0A Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.C) Reactivity: 1C Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.C) Reactivity: 1C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.A) Reactivity: 0A Position: 53 (position.label in template: 53.A) Reactivity: 0A Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.C) Reactivity: 1C Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.C) Reactivity: 0.5C Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.A) Reactivity: 0A Position: 73 (position.label in template: 73.A) Reactivity: 0A Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.C) Reactivity: 0C Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.C) Reactivity: 0C Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.A) Reactivity: 0.5A Position: 106 (position.label in template: 106.A) Reactivity: 0A Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.C) Reactivity: 0.5C Position: 110 (position.label in template: 110.A) Reactivity: 0.5A Position: 111 (position.label in template: 111.A) Reactivity: 1A Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.A) Reactivity: 0A Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.A) Reactivity: 0.5A Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.C) Reactivity: 0C Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.A) Reactivity: 0.5A Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.A) Reactivity: nanA Position: 131 (position.label in template: 131.C) Reactivity: nanC Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.C) Reactivity: nanC Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.C) Reactivity: nanC Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.C) Reactivity: nanC Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.A) Reactivity: nanA Position: 144 (position.label in template: 144.C) Reactivity: nanC Position: 145 (position.label in template: 145.C) Reactivity: nanC Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.C) Reactivity: nanC Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.U) Reactivity: nanU Position: 152 (position.label in template: 152.A) Reactivity: nanA Position: 153 (position.label in template: 153.U) Reactivity: nanU Position: 154 (position.label in template: 154.C) Reactivity: nanC Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.G) Reactivity: nanG Position: 161 (position.label in template: 161.3')3' 10 20 30 50 100 150


lrp-ftsK



Position: 340-459, Conformation: #0







Retained alignments:


   NC_003910.7       UUCU.U..G.UUG.A.A...C....UA.C..AAA.AA...A...AUGGU.CG.U.UUAUCUAAUGUUGAGUUAU.C..U..A..A..A..C..G..GG.U.AG..G..G..U.U.A..A..G..............................................U.C.CA...A..C.CCC..U..U.G..U..U..U.A.G.A.....A.A.G...A...GU......UA..A.....G...CG....UU.U...AG.A.A.A..AA.GA.G..AA.G.U.A..C..A.U.U.A.G.U..GGUU...AU.A.A...........................................AGC..U....A.U.U..U.U.G........A..A.C..CC...A..C..A..U..A...A.A.C.......................U.U.G
   NC_003911.12      UUCU.G..-.-GC.G.G...Ag..cUU.C..AGG.CG...G...AUGGC.CG.C.AUGACCAAUGUCGAGCUGG.C..C..A..A..A..C..G..GG.U.UG..G..A..A.U.U..U..C..............................................-.-.-G...G..C.GCC..G..C.C..C..U..G.C.C.Ug...cG.AcG...U...GU......UC..G.....C...GC....GC.U...UG.A.G.G..AC.GC.G..GG.G.C.U..G..A.U.C.C.G.C..GGCU...AU.C.A...........................................CGC..C....G.A.G..G.U.C........AauG.C..-C...C..G..C..C..A...A.U.U.......................G.G.G
   NC_004311.2       CUCC.G..C.GCG.C.-...-....UU.C..AGC.GC...A...ACGGG.CG.C.AUUGCCAACAAUGAUCUCG.C..A..C..G..C..G..A..GG.U.GG..G..C..C.U.G..U..C..............................................U.C.CA...U..C.GCC..C..U.GccU..G..C.G.G.C.....G.G.G...U...G-......-A..A.....G...CU....UC.U...GG.A.G.G..AA.G-.C..GG.G.U.G..U..G.A.U.CgA.C..CGCU...AU.G.U...........................................GGC..G....G.U.G..U.U.G........A..A.C..CC..gG..C..C..A.aG...A.U.C.......................G.G.C
   NC_004347.2       UUCU.U..A.AUG.A.A...U....UA.C..AAA.UU...G...AUGGA.CG.C.AUUUCAAAUGUGGAACUGU.C..U..A..A..A..A..G..AG.U.UG..G..A..U.U.A..A..G..............................................U.C.CA...A..C.UCC..G..U.G..U..U..U.A.G.A.....A.A.G...A...GU......GA..A.....A...CG....AC.U...CG.A.A.A..AG.CA.A..GG.A.U.A..U..A.U.C.A.A.U..GGCU...AU.A.C...........................................GGC..U....U.U.G..G.U.G........A..A.U..CC...U..C..A..U..U...U.C.U.......................U.G.G
   NC_004603.1       UUCU.U..A.AUG.A.A...C....UG.C..AGA.AA...G...ACGGU.CG.U.AUUUCAAACGUUGAGCUUU.C..A..A..A..A..C..G..UG.U.AG..G..A..C.U.U..U..C..............................................U.C.CA...A..C.GCC..A..U.G..U..U..U.G.G.A.....G.C.G...U...GU......GC..G.....U...CG....CU.U...AG.A.G.C..GU.CA.A..GG.C.U.A..C..A.U.C.A.C.A..GGAU...AU.A.C...........................................UGC..G....C.U.A..C.U.U........A..A.U..CC...G..C..A..G..U...U.C.C.......................U.A.G
   NC_005126.1       UCCU.A..A.AUG.A.G...C....UA.C..AGA.AA...G...AUGGG.CG.A.AUUUCUAACGUAGAACUGU.C..U..A..A..A..C..G..GG.U.AG..G..U..U.U.A..U..C..............................................U.C.CA...A..C.CCC..A..U.G..U..U..U.G.G.A.....G.C.G...A...GU......UC..G.....U...CG....UC.U...GG.A.A.C..GU.CA.A..GG.G.U.U..U..A.U.U.A.C.U..GGAU...AC.A.C...........................................GGC..A....U.U.G..C.U.G........A..A.U..CC...U..C..A..C..U...A.U.U.......................U.G.G
   NC_005966.1       UUCU.G..G.AUA.U.U...U....UG.C..AAA.AG...G...AAGGC.CG.U.AUUGCAAUUAGUGAGCUGG.C..C..-..-..-..-..-..--.-.--..-..-..-.-.-..-..-uccagaguca.....................aucuaucaacu....-.-.--...A..C.CCC..U..U.G..C..U..C.G.G.A.....G.C.G...G...GU......GA..A.....A...CG....UC.U...GG.A.A.C..GG.GA.U..GG.C.A.U..U..A.U.U.A.C.A..GGCU...AU.C.A...........................................UGC..A....C.G.C..C.U.G........A..A.U..CC...A..A..U..C..U...A.U.G.......................U.-.-
   NC_006300.1       UUCU.U..A.AUG.A.A...U....UG.C..AAC.GU...A...ACGGC.AA.A.AUUUCAAAUAUUGAUUUGU.C..A..A..A..A..A..A..GG.U.CG..G..A..U.U.G..U..C.............................................gC.C.GAc.a-..-.-CC..U..U.G..U..U..U.G.G.A.....G.C.G...G...GU......AA..A.....G...CG....CC.U...UG.A.G.A..AA.CA.A..GG.G.G.U..U..A.U.U.A.U.G..GGCU...AU.A.A...........................................AGC..A....U.U.A..U.U.A........A..A.C..CC...G..G..A..A..U...U.A.U.......................U.A.A
   NC_007406.1       AUCC.U..C.AG-.C.G...-....AG.A..UUC.AG...GccgAUGGC.CG.G.AUCACCAACGUCGAACUGG.C..G..A..A..A..C..G..GGuC.GG..C..A..-.U.U..U..C..............................................G.C.CG...C..C.GCC..G..U.G..C..C..U.G.C.G.....C.C.G...G...GU......CC..G.....G...AC....GC.U...GG.A.G.G..AA.GA.G..GG.C.U.A..U..A.U.U.C.A.G..G--G...AU.A.C...........................................CGCggG....C.U.G..C.U.C........G..A.U..CC...G..C..A..G..C...G.G.-c.................uc...G.G.-
   NC_007481.1       UUUU.A..G.ACG.U.U...C....UG.C..AAC.AG...A...ACGGC.AG.A.AUUUCAAAUGUUAACCUCG.C..A..-..-..A..A..G..CA.G.GU..U..A..A.U.U..U..A..............................................A.G.CC...C..C.AGCccU..U.G..U..C..U.U.G.A.....U.C.G...U...GU......AA..A.....G...CG....UU.U...AG.A.G.C..AA.GA.A..GG.C.U.A..U..A.U.U.G.A.A..GGCU...AU.G.U...........................................UGC..C....A.-.A..G.C.U........U..A.G..CG...A..A..G..C..C...A.A.G.......................C.U.U
   NC_007624.1       CUCC.G..C.GCG.C.-...-....UU.C..AGC.GC...A...ACGGG.CG.C.AUUGCCAACAAUGAUCUCG.C..A..C..G..C..G..A..GG.U.GG..G..C..C.U.G..U..C..............................................U.C.CA...U..C.GCC..C..U.GccU..G..C.G.G.C.....G.G.G...U...G-......-A..A.....G...CU....UC.U...GG.A.G.G..AA.G-.C..GG.G.U.G..U..G.A.U.CgA.C..CGCU...AC.G.U...........................................GGC..G....G.U.G..U.U.G........A..A.C..CC..gG..C..C..A.aG...A.U.C.......................G.G.C
   NC_007712.1       UCCU.G..A.AUG.A.A...C....UG.C..AAA.AG...G...ACGGA.CG.G.AUUUCCAAUGUCGAGUUAU.C..A..A..A..G..C..G..GG.U.AG..G..U..C.U.A..U..C..............................................G.C.CA...A..C.GCC..C..U.G..U..C..U.U.G.A.....A.C.G...C...GU......AC..G.....C...CG....UC.U...UG.A.G.C..GC.CA.G..GG.U.U.U..C..A.U.C.C.A.G..GGCU...AU.A.C...........................................GGC..G....C.U.G..U.U.G........A..A.C..CC...G..C..A..U..U...A.U.C.......................U.G.G
   NC_007794.1       CUCG.C..C.--G.A.A...C....UA.C..AGG.CA...G...AAGGG.CG.G.GUAACCAACGUGGAACUCG.C..A..C..A..G..C..G..CG.U.GG..G..G..C.U.C..A..C..............................................C.G.CG...C..C.GCC..G..U.G.cC..U..G.C.G.C....cG.U.G...U...CC......GC..G.....-...-C....GC.U...CG.A.G.G..AU.GC.G..GG.C.G.U..C..A.U.C.A.A.G..GGCU...A-.-.-ccaugc..............................cgaacu.---..-....-.-.-..-.C.G........A..U.G..CC...U..C..G..A..A...G.C.U.......................C.G.G
   NC_007908.1       UACU.U..G.AAG.U.G...C....UG.C..AGC.AA...G...ACGGG.CG.C.AUCAAUAACCAGGACCUGG.C..C..G..A..C..C..G..CA.U.CG..G..C..C.U.G..U..C..............................................C.C.CC...U..C.ACC..C..U.G..C..C..U.G.C.G.....C.C.G...G...GU......GC..G.....U...GC....GC.U...GG.-.A.G..GA.AU.C..CG.G.C.C..U..G.A.U.C.G.U.gGGCU...AC.C.G...........................................GGC..G....G.U.G..C.U.-........G..G.A..CG...C..C..A..A.aA...A.A.C.......................U.G.G
   NC_007952.1       CUUU.C..C.CAG.U.U...G....CA.G..AA-.-G...A...AAGGC.CG.C.AUAACCAACGUCGAGCUUG.C..C..G..A..C..G..C..GG.U.CG..G..C..C.U.G..U..C.............................................gC.C.GA...G..C.-CC..G..U.G..C..C..U.G.A.U.....C.C.G...C...GU......CA..A.....G...CG....UC.U...GG.A.G.A..AA.GC.G..GG.C.U.A..C..A.U.C.A.U.C..GGCU...AC.G.G...........................................UGC..G....C.A.G..A.U.C........C..A.G..CU...C..G..A..A..A...A.G.C.......................U.C.G
   NC_007954.1       UCCU.C..A.AUG.A.A...U....UA.C..AGC.UC...G...ACGGC.AG.G.GUGUCUAAUGUUGAGCUAU.C..A..A..A..A..C..G..UG.U.CG..G..U..C.U.A..A..G..............................................C.C.CA...A..C.CCC..U..U.G..C..C..U.A.G.A.....G.C.G...G...GU......UA..A.....G...CG....UU.U...AG.A.G.A..AA.CA.A..GG.C.U.U..C..A.U.U.A.A.G..GGUU...AU.A.C...........................................CGC..G....C.U.G..G.U.C........A..A.C..CC...U..A..A..U..U...U.U.C.......................U.C.G
   NC_007964.1       UUCU.G..A.GCG.A.G...A....UU.C..AGG.CC...G...ACGGC.CG.G.AUCACCAACGUCGAACUGG.C..U..A..A..A..C..G..GGuC.GG..C..A..-.U.U..U..C..............................................G.C.CG...C..C.GCC..G..U.G.uC..U..G.C.G.C....cG.G.G...-...-U......CC..G.....C...AC....GC.U...GG.A.G.G..AG.GA.G..GG.U.U.A..C..A.U.C.C.A.G..GGCU...AC.-.-...........................................CGC..Gg..aU.U.G..C.U.C........G..A.U..CC...G..C..A..G..C...G.G.-c.................uc...G.G.-
   NC_008345.1       AUCU.U..A.AAU.G.A...A....CU.U.cAAC.AG...G...ACGGU.CG.C.AUUUCAAAUGUUGAACUAU.C..U..A..A..A..C..G..AG.U.UG..G..C..U.U.A..A..G..............................................U.C.CU...A..C.ACC..A..U.G..U..U..U.G.G.A.....A.A.G...A...GU......UA..A.....A...AG....GC.U...UG.A.A.A..AA.CA.A..GG.U.U.U..U..A.U.U.A.G.U..GGUU...AC.A.C...........................................CGC..G....U.U.G..G.U.U........A..A.U..CC...G..C..A..U..U...U.U.C.......................U.C.G
   NC_008686.1       UUCU.C..U.CCG.U.C...C....UG.C..AAC.GC...G...ACGGG.CG.C.AUGACCAAUGCCGAUCUUG.C..C..A..A..C..G..A..GGcC.GG..G..C..U.G.U..C..C..............................................C.C.CA...G..C.GCC..U..G.C..C..A..CcG.C.C.....G.C.G...U...--......GC..A.....G...CG....CC.U...GG.A.A.G..AA.GC.G..GG.G.G.U..G..A.U.C.C.G.C..GGCU...AU.G.U...........................................CGC..G....C.U.G..C.U.C........G..A.C..GC...G..C..G..C..A...A.G.C.......................-.-.-
   NC_008700.1       UCCU.U..A.AUG.A.A...C....UG.C..AAA.UU...G...AUGGA.AG.A.AUUUCAAAUGUUGAGCUGU.C..C..A..A..A..C..G..GG.U.AG..G..G..C.U.G..A..G..............................................U.C.CA...A..C.CCC..U..U.G..U..-..-.U.U.G.....G.A.A...A...GG......GUuaA.....A...CG....CU.U...AG.A.A.A..AG.CA.A..GG.G.U.A..U..A.U.C.A.A.U..GGCU...AC.A.C...........................................CGC..C....U.U.G..G.U.A........A..A.C..CC...A..C..A..U..U...A.C.U.......................U.G.G
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   NZ_HG938354.1     UUCU.C..G.AGG.C.G...G....UC.C..AGG.GU...G...AUGGC.CG.G.AUCACCAAGCUCGCGCUCG.C..C.gA..A..A..A..G..GU.C.GG..C..-..C.U.U..U..C..............................................G.C.CG...A..C.GCC..C..U.G..C..U..G.G.A.U.....G.C.G...U...CU......UC..G.....G...AA....GC.U...GG.A.A.A..AA.GC.A..GG.C.A.U..C..A.U.CgC.C.G..-GCU...AU.C.A...........................................UGC..C....C.G.G..C.U.U........G..U.G..CC...A..A..G..G..A...A.G.A.......................-.-.-
   NZ_LR134167.1     UUCU.G..A.AUG.A.A...U....UA.C..AGC.GU...A...AUGGC.AA.A.AUUUCUAAUAUUGACCUUU.C..A..A..A..G..A..A..AG.U.CG..G..A..U.U.A..U..C..............................................G.C.CA...A..C.CCC..U..U.G..U..U..U.G.G.A.....G.C.G...U...GU......AA..A.....A...CG....CU.U...GG.A.A.A..AA.CA.A..GG.G.G.U..G..A.U.U.A.U.G..G--G...AU.A.C...........................................CGU..G....C.C.UugC.U.U........A..A.C..CC...U..G..A..A..U...U.G.U.......................U.G.G
   NZ_LR134201.1     UUCU.C..A.ACG.A.A...U....UG.C..AAA.AA...G...AUGGG.CG.C.AUUUCUAACGUUGAGCUUU.C..C..A..A..G..C..G..UG.U.UG..G..G..C.U.U..U..C..............................................G.C.CG...A..C.GCC..G..U.G..C..C..U.U.G.A.....G.C.G...C...GU......CC..G.....U...CG....UC.U...GG.A.A.C..GU.CA.G..GG.U.U.U..U..A.U.C.C.A.G..GGCU...AU.A.C...........................................GGC..G....C.U.G..U.U.A........A..A.C..CC...G..C..A..U..U...A.U.C.......................U.G.G
   NZ_LR134302.1     U-CC.U..G.GUC.C.G...C...cUG.C..AAG.AG...A...ACAGC.CA.G.AUCAGCAACCAGGACCUGG.C..C..G..A..G..C..A..GG.U.GG..C..G..C.U.G..U..C..............................................G.C.CA...U..C.GGC..U..U.G..C..C..U.G.C.G.....U.C.G...C...GU......GC..G.....G...GC....GC.U...GG.A.A.G..AA.GC.C..GG.G.U.U..C..A.U.C.C.G.C..AACU...AC.C.G...........................................GGC..C....G.U.G..C.U.G........G..A.C..GC...C..G..A..A..A...A.G.C.......................U.G.G
   NZ_LR134327.1     UUCU.C..A.AUG.A.A...U....UG.C..AAC.GU...A...AUGGA.AA.A.AUUUCCAAUAUUGAUUUGU.C..C..A..A..G..A..A..AG.U.GG..G..G..U.U.G..U..C..............................................G.C.CG...A..C.GCC..U..U.G..U..U..U.G.G.A.....G.C.G...G...GU......GA..A.....A...CG....CU.U...GG.A.G.A..AA.CA.A..GG.C.G.U..G..A.U.C.A.U.G..GGCU...AU.C.G...........................................UGC..-....C.U.U..G.U.U........G..A.A..CC...C..G.gA..A..U...U.A.U.......................U.A.G
   NZ_LR134376.1     UUCU.G..A.AUG.A.A...C....UG.C..AAA.AG...G...AUGGC.AG.G.AUUUCGAACGUUGAGUUGU.C..C..A..A..A..C..G..AG.U.UG..G..C..C.U.G..A..G.............................................uC.C.UA...-..C.ACC..G..U.G..U..C..U.G.G.A.....A.C.G...G...GU......UC..G.....U...CG....CC.U...GG.A.G.C..GA.CA.A..GG.C.U.A..U..A.U.C.G.A.A..GGAU...AU.G.C...........................................CGC..U....A.U.U..C.U.G........A..A.C..CC...U..C..A..U..U...A.U.C.......................U.G.G
   NZ_LR134485.1     UUCU.U..A.AUG.A.G...C....UG.C..AAA.AG...G...AUGGG.CG.U.AUUUCUAACGUCGAGCUUU.C..A..A..A..A..C..G..AG.U.GG..G..A..C.U.U..U..C..............................................U.C.CA...A..C.GCC..C..U.G..C..C..U.U.G.A.....G.C.G...U...GU......GC..G.....U...CG....GU.U...GG.A.A.A..GA.CA.G..GG.U.U.U..U..A.U.U.C.A.G..GGCU...AU.A.C...........................................AGC..G....C.U.G..U.U.G........A..A.C..CC...G..C..A..U..U...A.U.C.......................U.G.G
   NZ_LR134494.1     UCCU.G..A.ACG.A.A...C....UG.C..AGA.AG...G...AUGGG.CG.U.AUUUCGAACGUUGAGCUUU.C..C..A..A..G..C..G..CG.U.GG..G..G..U.U.A..U..C..............................................C.C.CA...A..C.CCC..A..U.G..U..U..U.A.G.A.....A.C.G...U...GU......GC..G.....C...CG....CC.U...CG.A.G.C..GC.CA.G..GG.U.U.U..U..A.U.U.C.A.U..GGUU...AU.A.C...........................................CGC..U....U.U.G..C.U.C........A..A.C..CC...G..C..A..U..U...A.U.C.......................U.G.G
   NZ_LR134531.1     UUUU.G..A.AUG.A.A...U....UG.C..AGU.UG...G...AUGGA.CG.C.AUUUCUAACGUUGAGCUGU.C..A..A..A..A..C..G..UG.U.UG..G..C..U.U.A..U..C..............................................A.C.CA...A..C.GCC..G..U.G..U..U..U.G.G.A.....G.C.G...G...GU......AC..G.....U...CG....UC.U...UG.A.A.A..GA.CA.G..AA.A.U.U..U..A.U.U.C.A.A..GGUU...AU.A.C...........................................UGC..G....U.U.A..C.U.G........A..A.U..CC...U..C..A..U..U...A.U.U.......................U.A.G
   NZ_LR699007.1     UUCU.U..A.ACG.A.A...U....UG.C..AGA.AA...G...AUGGC.CG.U.AUCUCUAACGUCGAACUCU.C..C..A..A..A..C..G..UG.U.GG..G..U..C.U.G..U..C..............................................U.C.CG...A..C.UCC..G..U.G..U..C..U.G.G.A.....A.C.G...U...GU......GC..G.....C...CG....UU.U...AG.A.G.C..GU.CA.G..GG.C.U.U..U..A.UcA.C.C.G..GGU-...AU.A.C...........................................CGC..G....C.U.G..C.U.G........A..A.U..CC...G..C..A..C..U...A.U.C.......................U.G.G
   NZ_LS483250.1     UUCU.U..A.AUG.A.A...U....UA.C..AAA.AA...G...ACGGC.CG.A.AUUUCCAAUGUAGAGUUGU.C..G..A..A..A..C..G..UG.U.AG..G..C..U.U.G..A.gU..............................................C.C.UA...-..C.GCC..A..U.G..U..U..U.A.G.A.....G.C.G...C...GU......AC..G.....U...CG....CU.U...AG.A.A.C..GC.CA.A..GG.A.U.A..U..A.U.U.U.U.A..GGUU...AU.A.C...........................................CGC..A....A.U.U..C.U.A........A..A.U..CC...A..C..A..A..U...U.U.C.......................U.G.G
   NZ_LS483422.1     UAUU.A..A.ACG.A.A...U....UA.C..AAA.AA...G...ACGGG.CG.U.AUCUCUAACGUAGAAUUAU.C..U..A..A..G..C..G..UG.U.AG..G..G..C.U.U..U..C..............................................A.C.CA...A..C.ACC..G..U.G..U..U..U.A.G.A.....G.C.G...U...GU......UC..G.....U...CG....UU.U...GG.A.A.A..GA.CA.A..GG.A.U.U..U..A.U.U.U.C.U..GGGU...AU.A.C...........................................GGC..A....U.U.A..U.U.A........A..A.U..CC...A..C..A..U..U...A.C.C.......................U.U.G
   NZ_LS483429.1     UUCU.G..A.AUG.A.A...U....UA.C..AAC.GC...A...ACGGU.AA.G.AUUUCCAAUAUCGAUUUGU.C..G..A..A..A..A..A..AG.U.GG..G..G..C.U.U..U..C..............................................G.C.CA...A..C.ACC..U..U.G..U..U..U.A.G.A.....A.C.G...A...GU......UA..A.....A...CG....UU.U...GG.A.A.A..AA.CA.A..GG.U.G.U..G..A.U.U.A.U.G..GGGU...AU.C.G...........................................--C..G....C.AcU..G.U.U........A..A.A..UC...C..A..G.aA..U...U.A.U.......................U.G.G
   NZ_LS483443.1     UACU.C..A.AUG.A.A...U....UA.C..AAC.GC...A...AC-GG.CA.AaAUUUCCAACAUUGAUUUGU.C..A..A..A..A..A..A..AG.U.GG..G..A..U.U.G..U..C..............................................C.C.CA...A..C.GCC..U..U.G..U..U..U.A.G.A.....A.C.G...U...GU......AA..A.....A...CG....UU.U...GG.A.G.A..AA.CA.A..GG.G.G.U..G..A.U.U.A.U.G..GGAU...A-.-.-...........................................-UC..G....C.G.C..C.U.Uac....ugA..A.U..CC...G..G..A..A..U...U.A.U.......................U.A.G
   NZ_LS483458.1     UUCU.U..A.AUG.A.A...U....UA.C..AAC.GC...A...ACGGU.AA.A.AUUUCUAAUAUUGAUUUGU.C..G..A..A..A..A..A..AG.U.AG..G..G..C.U.U..U..C..............................................C.C.CC...A..C.UCC..U..U.G..U..U..U.A.G.A.....A.C.G...U...GU......UA..A.....A...CG....UC.U...AG.A.A.A..AA.CA.A..GG.U.G.U..A..A.U.U.A.U.G..GGAU...AU.C.G...........................................UGC..G....U.U.G..U.U.G........A..A.U..CC...U..G..A..A..U...U.A.U.......................U.G.G
   NZ_LS483470.1     UUCU.G..A.AUG.A.A...U....UA.C..AAA.UG...G...AUGGU.CG.C.AUCUCUAACGUUGAGCUUU.C..A..A..A..G..C..G..UG.U.AG..G..G..C.U.U..U..C.............................................gC.C.UA...-..C.GCC..U..U.G..U..C..U.G.G.A.....G.C.G...C...GU......UC..G.....C...CG....UU.U...GG.A.A.A..GA.CA.A..AA.G.U.U..U..A.U.U.C.A.A..GGCU...AU.A.C...........................................GGC..G....C.U.G..U.U.A........A..A.C..CC...U..C..A..C..U...A.U.C.......................U.C.G
   NZ_LT605586.1     CUCC.G..C.GCG.C.-...-....UU.C..AGC.GC...A...ACGGG.CG.C.AUUGCCAACAAUGAUCUCG.C..A..C..G..C..G..A..GG.U.GG..G..C..C.U.G..U..C..............................................U.C.CA...U..C.GCC..C..U.GccU..G..C.G.G.C.....G.G.G...-...-U......AA..A.....G...CU....UC.U...GG.A.G.G..AA.-G.C..GG.G.U.G..U..G.A.U.CgA.C..CGCU...AU.G.U...........................................GGC..G....G.U.G..U.U.G........A..A.C..CC...G..G..C..C..A...A.G.A.......................-.-.-
   NZ_LT615367.1     UUCU.G..A.AUG.A.A...U....UA.C..AAA.AA...G...AUGGG.CG.U.AUUUCCAACGUAGAAUUGU.C..A..A..A..G..C..G..GGuU.GG..C..-..C.U.G..U..C..............................................G.C.CA...A..C.GCC..U..U.G..U..U..U.A.G.A.....G.C.G...C...GU......UC..G.....U...CG....CC.U...GG.A.G.C..GU.CA.A..GG.G.U.U..U..A.U.U.A.A.C..GGUU...AU.A.C...........................................UGC..G....U.U.G..C.U.G........A..A.C..CC...G..C..A..U..U...A.U.C.......................U.G.G
   NZ_LT906448.1     UUUU.A..A.AUG.A.A...U....UG.C..AGC.GU...A...ACGGA.AA.A.AUUUCCAAUAUUGAUUUGU.C..A..A..A..G..A..A..AG.U.AG..G..U..U.U.G..U..C..............................................G.C.CG...A..C.UCC..U..U.G..U..U..U.A.G.A.....G.C.G...C...GU......GA..A.....G...CG....UU.U...AG.A.A.A..AG.CA.A..GG.U.G.U..A..A.U.U.A.U.G..GGCU...AU.C.G...........................................UGC..A....U.U.A..C.U.U........A..A.U..CC...A..G..A..A..U...U.A.C.......................U.U.G
   NZ_LT906463.1     UUCU.G..A.AUG.A.A...U....UA.C..AAC.GU...A...ACGGA.AA.G.AUUUCCAAUAUUGAUUUGU.C..C..A..A..A..A..A..GG.U.CG..G..G..C.U.U..U..C..............................................C.C.CA...A..C.GCC..U..U.G..C..U..U.A.G.A.....A.C.G...G...GU......AA..A.....A...CG....UU.U...AG.A.A.A..AA.CA.A..GG.G.G.U..U..A.U.C.C.U.A..GGGU...AU.C.G...........................................GGC..A....U.U.G..U.U.A........A..A.U..CC...U..G..A..G..U...U.A.U.......................U.G.G
   NZ_LT906479.1     UCCU.G..A.ACG.A.G...U....UA.C..AGA.AG...G...AUGGG.CG.U.AUUUCGAACGUUGAGCUUU.C..G..A..A..G..C..G..CG.U.GG..G..G..U.U.A..U..C..............................................C.C.CA...A..C.UCC..G..U.G..U..U..U.G.G.A.....A.C.G...C...GU......GC..G.....C...CG....CU.U...GG.A.G.C..GC.CA.G..GG.U.U.U..C..A.U.U.C.A.U..GGCU...AU.A.C...........................................CGC..A....U.U.G..C.U.U........A..A.C..CC...G..C..A..U..U...A.U.C.......................U.G.G
   NZ_OU594967.1     UACU.C..A.AUG.A.G...U....UG.C..AAC.AG...G...AUGGC.AG.A.AUCUCUAAUGUGGAGUUGU.C..U..A..A..A..C..G..AG.U.AG..G..A..U.U.G..A..G..............................................U.C.CA...A..C.ACC..A..U.G..U..C..U.U.G.A.....A.A.G...G...GU......UC..G.....C...CG....UC.U...CG.A.A.C..GA.CA.G..GG.A.U.A..C..A.U.C.U.G.U..GGUU...AU.A.C...........................................UGC..U....A.U.U..U.U.A........A..A.C..CC...G..C..A..A..U...A.U.U.......................U.G.G
   NZ_OU907312.1     UCCU.G..A.GUG.A.G...U....UG.C..AAA.AA...A...AUGGC.CG.G.AUUUCCAACGUUGAGCUCU.C..U..A..A..A..C..G..UG.U.GG..G..G..U.U.A..U..C..............................................A.C.CA...A..C.CCC..C..U.G..U..U..U.G.G.A.....A.C.G...G...GU......CC..G.....C...CG....UU.U...AG.A.A.A..AA.CA.G..AC.C.U.A..C..A.U.C.C.A.A..GGAU...AU.A.C...........................................AGC..A....C.A.G..C.U.C........A..A.U..CC...A..C..A..G..C...U.G.C.......................U.G.C


   Structure         ((((.......((.(.(...(....((.(....(.((...(......((.((.(.............................................(.((..(..............................................................).).))...)..).)))..........)..)..).).........).).)...............))........)...))...........)).).).............((.(.(.(...........(.(.(...(((....................................................))).......).).)...............)..).)..))...(..(..(.....................................).).)


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lrp-ftsK



Position: 340-459, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

U Y C U Y G Y U R C A R R G A Y G G C G A U C A A Y R Y G A R C U C R A R R G U G R Y U Y C C C C U G Y Y Y R R C G G U R R Y U G A R R R G G Y A U Y G G Y U A Y G C U R R Y C C R 5'