lpp



Position: 141-275, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.C) Reactivity: nanC Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.A) Reactivity: 1A Position: 37 (position.label in template: 37.A) Reactivity: 1A Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.C) Reactivity: 1C Position: 40 (position.label in template: 40.C) Reactivity: 1C Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.C) Reactivity: 1C Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.A) Reactivity: 0.5A Position: 50 (position.label in template: 50.C) Reactivity: 0.5C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.C) Reactivity: 1C Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.C) Reactivity: 0.5C Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.C) Reactivity: 1C Position: 60 (position.label in template: 60.A) Reactivity: 1A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.C) Reactivity: 0.5C Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.A) Reactivity: 0.5A Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.A) Reactivity: 0A Position: 74 (position.label in template: 74.A) Reactivity: 1A Position: 75 (position.label in template: 75.C) Reactivity: 1C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.C) Reactivity: 0.5C Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.A) Reactivity: 1A Position: 80 (position.label in template: 80.A) Reactivity: 0.5A Position: 81 (position.label in template: 81.A) Reactivity: 0.5A Position: 82 (position.label in template: 82.A) Reactivity: 0.5A Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.C) Reactivity: 1C Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.C) Reactivity: 0.5C Position: 89 (position.label in template: 89.A) Reactivity: 0.5A Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.C) Reactivity: 0.5C Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.A) Reactivity: 0A Position: 102 (position.label in template: 102.C) Reactivity: 0.5C Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.A) Reactivity: 0A Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.A) Reactivity: 1A Position: 110 (position.label in template: 110.C) Reactivity: 1C Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.C) Reactivity: 0.5C Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.A) Reactivity: 0A Position: 116 (position.label in template: 116.A) Reactivity: 0.5A Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.C) Reactivity: 0C Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.A) Reactivity: 1A Position: 122 (position.label in template: 122.A) Reactivity: 1A Position: 123 (position.label in template: 123.A) Reactivity: 0A Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.A) Reactivity: 0A Position: 129 (position.label in template: 129.C) Reactivity: 0.5C Position: 130 (position.label in template: 130.C) Reactivity: 1C Position: 131 (position.label in template: 131.A) Reactivity: 0.5A Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.C) Reactivity: 0C Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.A) Reactivity: 1A Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.C) Reactivity: 0C Position: 139 (position.label in template: 139.A) Reactivity: 0A Position: 140 (position.label in template: 140.A) Reactivity: 1A Position: 141 (position.label in template: 141.C) Reactivity: 1C Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.A) Reactivity: nanA Position: 144 (position.label in template: 144.C) Reactivity: nanC Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.U) Reactivity: nanU Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.C) Reactivity: nanC Position: 153 (position.label in template: 153.A) Reactivity: nanA Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.C) Reactivity: nanC Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.C) Reactivity: nanC Position: 162 (position.label in template: 162.C) Reactivity: nanC Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.A) Reactivity: nanA Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.U) Reactivity: nanU Position: 168 (position.label in template: 168.U) Reactivity: nanU Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.G) Reactivity: nanG Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.U) Reactivity: nanU Position: 175 (position.label in template: 175.G) Reactivity: nanG Position: 176 (position.label in template: 176.3')3' 10 20 30 50 100 150


lpp



Position: 141-275, Conformation: #0







Retained alignments:


   NC_005126.1       UCGUACUA..AAA......................UUGUA...CUGGGUG.CAGU.AGUUCUGGCU..UCUAC.UCUGUUGGCUGGU.UGUU............CA..AGCA...CUGCU.AAGGUUGACCAACUGACUUCU................GAU...AUU.C..AGAC.U..........................................CUGAAUGCAAAAGU...UGAUCA...............ACUGAGCAAUGACGUGAACGCAGU..............................ACAUACUGACGUUC..AA.---
   NC_007712.1       UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUUCUGGGU..UCCAC.UCUGCUGGCUGGC.UGCU............CU..AGCA...ACGCU.AAAAUCGAUCAGCUGUCCUCC................GAC...GUU.C..AGAC.C..........................................CUGAACGCCAAAGU...UGACCA...............UAUCAGCAACGACGUGAACGCUCU..............................GAGCUCCGACUUAC..AG.GCU
   NC_010554.1       AGC---AA..AAA......................UUGUA...CUAGGUG.CGGU.AAUUCUGGCU..UCAGG.CCUAUUAGCAGGU.UGUU.........cuuCU..AGCAacaACGCA.CAAUUAGACCAAAUCUCUUCU................GAU...GU-.A..AACCgU..........................................UUAAAUACGCAAGU...UCAACA...............ACUAAGUAGUGAUGUUC----AA-u.........................ca..----GCUAACGCUC..AA.GCA
   NC_010694.1       UCGUACUA..AAC......................UGGUG...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGU.UGCU............CA..AGCA...ACGCU.AAAAUUGACCAGCUGUCUACC................GAC...GUU.C..AGAC.U..........................................CUGAACGCGAAAGU...UGACCA...............GCUGAGCAACGACGUGACUGCAAU..............................CCGUUCUGACGUUC..AG.GCU
   NC_012691.1       C--AAGUAucAAG......................UACUG...CUGGGCA.CCAU.CGCUCUGAGC..UCAAC.CCUGCUGGUUGGU.UGUG............CA..AACA...CUUCU.AAAGUUGAA---------U--c..............uGAC...GUU.C..AGAC.C..........................................CUGACUGGUAAAGU...UGACCA...............GCUGGCUACUGAAAUCGGUUCAAU..............................CAA---AGACGGUC..AGa---
   NC_012880.1       UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGU.UGUU............CC..AGCA...ACGCU.AAACUGGAUCAGCUGUCUUCU................GAC...GUU.U..CUUC.U..........................................CUGAACGACAAAGU...AUCUGC...............UCUGACCAGCAAAGUUGACGCUCU..............................GGCUACUGACGUGC..AG.GCU
   NC_012912.1       UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...ACGCU.AAACUGGAUCAGCUGUCUUCU................GAC...GUU.U..CUUC.U..........................................CUGAACGAGAAAGU...AUCUGC...............UCUGACCAGCAAAGUUGACGCUCU..............................GGCUACCGACGUGC..AG.GCU
   NC_012962.1       UCGUACUA..AAA......................UUGUA...CUGGGUG.CAGU.AGUUCUGGCU..UCUAC.UCUGUUAGCUGGU.UGUU............CA..AGUA...CUGCU.AAGGUUGAUCAACUGUCUUCC................GAU...AUU.C..AGAC.U..........................................CUGAAUGCAAAAGU...UGAUCA...............ACUGAGCAACGACGUGAACUCAGU..............................ACGUACUGAUAUUC..AA.GCA
   NC_013592.1       UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCCAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...AUGCU.AAACUGGAUCAGCUGUCUUCU................GAC...GUU.U..CUUC.U..........................................CUGAACGAGAAAGU...AUCUGC...............UCUGACCAGCAAAGUUGACGCUCU..............................GGCUACCGACGUGC..AG.GCU
   NC_013961.1       UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGU.UGCU............CA..AGCA...ACGCC.AAAAUCGACCAGCUGUCUACC................GAC...GUA.C..AGAC.U..........................................CUGAACGCAAAAGU...UGACCA...............GCUGAGCAACGACGUGACUGCAAU..............................CCGUUCUGACGUUC..AG.GCU
   NC_014306.1       UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UUUGCUGGCUGGC.UGUU............CA..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUACC................GAC...GUG.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCUGACGUUC..AG.GCU
   NC_017554.1       UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGU.UGCU............CA..AGCA...ACGCU.AAAAUCGACCAGCUGUCUUCA................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAGU..............................GCGUUCUGACGUUC..AG.GCU
   NC_020908.1       AGUCGUCU..GGC......................AGGCG...AUUAACG.UCGA.AAAUGAAUGU..-CAUU.ACUGCGUGCCGGCcCACA............CA..GGCA...UCGCA.AAAAUGAUGAAGGUGUCCGAU................GACaucACG.C..AGGC.G..........................................CUGCGCGAUGAGAC...AGCCUU...............GCCGAACGAAAAGCUGGAGGCAUU..............................GC----GCACAUUC..AC.AUU
   NZ_AP018933.1     GCGUGC--..---ca.................cu.--UCA...CUGAGUG.CCAU.UGUCCUGGCC..ACCGC.ACUGCUGGCAGGA.UGCG............CC..AGCG...GCCCU.UCCAAGGAA------------guc.........cuug---...CUC.-..GGCA.G..........................................CCAGAGCAACAGCU...UUAC--cagcaagccaucga.GGCGUUGAACAACGGCCGCUACUC..............................CAGCGCGGUCACCC..AG.CUC
   NZ_AP019630.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCCGACGUUC..AG.GCU
   NZ_AP022254.1     AAUGAAAA..AAA......................UGUUG...UUGGUAG.GUGU.UGUUGGUCUG..UCCGC.UCUGCUGGGCGGU.UGUG............CA..AACA...CCA--.----GCG---AACUGGAAACU................UCC...GUU.C..AGAA.U..........................................CUGUCUAACAAAGU...UGACCA...............ACUGGCUCAAGAUGUUAGCGCUGU............................ucGUGCUGAUCAGUCC..AAgAUC
   NZ_AP022568.1     -----CA-..---caaac..........cgggca.-UGCA...CCGGGCA.CAGUcAAGGCCAGGU..UACAC.UCCGCCGAUGAGC.UGCA............AC..GGCG...CCGCA.AAAGUGAAACCGCAGGCC---gcgcuaugagcgccggGCC...GUU.CucGCGC.A..........................................GCGAACUC------...------...............G-----------------------cugacgcuuuccagaaauucgaacagac..------CGUUGCCC..GG.GCC
   NZ_AP023184.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCUAC.UAUGCUGGCAGGU.UGUU............CU..UCUA...ACGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGAUCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCUGACGUUC..AA.GCU
   NZ_CP006568.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUUCUGGGU..UCCAU.UCUGCUGACUGGU.UGCU............CG..AGCA...ACGCU.AAAAUCGAUCAGCUGUUCUCC................GAC...GUU.C..AGAC.U..........................................CUGAACGCCAAGGU...UGACCA...............GAUCAGCAACGACGUGAACGCUCU..............................GCGCUUCGACGUAC..AG.GCU
   NZ_CP006569.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUUCUGGGU..UCCAC.UCUGCUGGCUGGC.UGCU............CG..AGCA...ACGCU.AAAAUCGAUCAGCUGUCCUCC................GAC...GUU.C..AGAC.U..........................................CUGAACGCCAAAGU...UGACCA...............GAUCAGCAACGACGUGAACGCUCU..............................GCGCUCCGACGUAC..AG.GCU
   NZ_CP006664.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CUGU.UAUCCUGGGU..UCUAC.UCUGCUGGCUGGC.UGCU............CU..UCCA...ACGCU.AAAAUCGACCAGCUGUCCUCU................GAC...GUU.C..AGAC.U..........................................CUGAACACCAAAGU...UGACCA...............GCUGUCUUCUGACGUGAACGCAAU..............................GCGCGCUGACGUUC..AG.GCU
   NZ_CP007044.2     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCUAC.UAUGCUGGCUGGU.UGCU............CU..AGCA...AUGCU.AAAAUUGACCAACUGUCUUCU................GAC...GUU.C..AAAC.U..........................................CUGAACGCUAAAGU...UGAUCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.---
   NZ_CP007230.1     UCGUACUA..AAC......................UUGUA...CUGGGCG.CGGU.AAUUCUGGCU..UCUAC.UAUGCUGGCUGGU.UGUU............CA..AGCA...AUGCU.AAAAUUGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAGU..............................GCGUUCUGACGUUC..AA.GCA
   NZ_CP009125.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUUGCUGGU.UGUU............CA..AGCA...AUGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AAAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGCUCUGACGUAC..AG.GCU
   NZ_CP009712.1     UCGUACUA..AAC......................UUGUA...CUGGGCG.CGGU.AAUUCUGGCU..UCUAC.AAUGCUGGCUGGU.UGUU............CA..AGCA...AUGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGAUCA...............ACUGAGCAACGACGUGAACGCAGU..............................GCGCGCUGACGUUC..AA.GCA
   NZ_CP009781.1     UCGUACUA..AAC......................UUGUA...CUGGGCG.CGGU.AAUUCUGGCU..UCAAC.UAUGCUGGCUGGU.UGUU............CA..AGCA...AUGCU.AAAAUCGACCAACUGUCUUCU................GAC...GUU.C..AAAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.GCA
   NZ_CP010048.1     AGUUAAUA..UUA......................UA-UG...UUGUUUG.UUUU.GGUUCGGUAU..GUUUA.UCU----GCAUGC.AGCA............CG..AGAA...AUG--.-UAGUUGAACAACUUUCUUCU................GAU...GUA.C..AAAC.A..........................................UUAAAUGCUAAGAU...GGAUCA...............AGUGACCAAUGAUGUAAGUGCAUU..............................GCGGCCUGAAGUAC..AA.AUU
   NZ_CP011104.1     UCGUACUA..AAA......................UUGUA...CUGGGUG.CAGU.AGUUCUGGCU..UCUAC.UCUGUUGGCUGGU.UGUU............CA..AGCA...CUGCU.AAAGUUGACCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAAUGCAAAAGU...UGAUCA...............ACUGAGCAAUGACGUGAAUGCAGU..............................UCGUACUGACAUUC..AA.---
   NZ_CP011254.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCUAC.UAUGCUGGCUGGU.UGCU............CA..AGCA...ACGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.GCA
   NZ_CP012264.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.C..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCCGACGUUC..AG.GCU
   NZ_CP012871.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCUGACGUUC..AG.GCU
   NZ_CP013920.1     UCGUACUA..AAG......................UUGUA...UUUAGCU.CUAU.UGUUCUAGCC..UCCAG.UCUUUUGGCAGGU.UGUU............CA..ACAA...GUAGC.CAAAUUAACAAACUAUUUUCA................GAU...GUU.C..AAAC.U..........................................UUGAACGGUAAGGU...UGAGCA...............ACUAUCUAAUGAUGUUCAAUCAUU..............................--------------..--.---
   NZ_CP013940.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCCGACGUUC..AG.GCU
   NZ_CP014136.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CUGU.AAUCCUGGGU..UCCAC.UCUGCUGGCAGGC.UGCU............CU..AGCA...AUGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.GCA
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   NZ_CP040449.1     AU-GAAAA..AAA......................UGUUG...UUGGUAG.GUGU.AGUUGGUCUG..UCUGC.UCUGCUGGGCGGU.UGUG............CU..AACA...CC---.------GAGCUGGAAACCUCU................GUU...---.C..AGAA.U..........................................CUGUCUAACAAGGU...UGAUCA...............ACUGGCUCAAGACGUUAGCGCCGU............................ucGCGCUGAUCAGUCC..AA.GAU
   NZ_CP041247.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...AUGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGAUGUGAACGCAAU..............................GCGUUCUGACGUCC..AG.GCU
   NZ_CP041764.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CUGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CU..AGCA...ACGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGAUCA...............ACUGAGCAACGACGUGAACUCUAU..............................CCGUUCCGACGUUC..AA.GCA
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   NZ_CP044060.1     AAUGAAAA..AAU......................UGUUG...UUGGUAG.GUGU.UGUUGGUCUG..UCCGC.UCUGCUGGGCGGU.UGUG............CA..AACA...CCA--.-------GCGAACUGGAAACU................UCC...GUU.C..AGAA.U..........................................CUGUCUAACAAAGU...UGACCA...............ACUGGCUCAAGAUGUUAGCGCAGU............................ucGUGCUGAU-CAGUC..C-.---
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   NZ_CP047349.1     AGC---GA..AAC......................UUGUA...CUAGGUG.CGGU.AAUUCUGGCU..UCAGG.CUUAUUAGCAGGU.UGU-ucu..ucua...GU..AAUA...AUGCA.CAAUUAGAUCAAAUCUCUUCU................GAU...GU-.A..AGCC.-g.......................................cc-UGAAUACUCAAGU...CCAGCA...............ACUAAGUGGUGAUGUA--C-----aauc...................ugcuc..--GUGCCGAAGCUA..A-.---
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   NZ_CP051883.1     AAUGAAAA..AAU......................UGUUG...UUGGUAG.GUGU.UGUUGGUCUG..UCCGC.UCUGCUGGGCGGU.UGUG............CA..AACA...CCA--.----GCG---AACUGGAAACC................UCC...GUU.C..AGAA.U..........................................CUGUCUAACAAAGU...UGACCA...............ACUGGCUCAAGAUGUUAGCGCAGU............................ucGUGCUGAU-CAAUCcaAG.AUU
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   NZ_CP055292.1     AGCUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCAGGU.UGCU............CC..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCCGACGUUC..AG.GCU
   NZ_CP059690.1     AGC---GA..AAC......................UUGUA...CUAGGUG.CGGU.AAUUCUGGCU..UCAGG.CUUAUUAGCGGGU.UGU-ucu..ucua...GU..AAUA...AUGCA.CAAUUAGAUCAAAUCUCUUCU................GAC...GU-.A..AGC-.-cgc....................................cug---AACACGCAAGU...UCAACA...............ACUAAGUAGUGAUGUA--------caau....................cugc..-----UCG-CGCUG..AA.GCU
   NZ_CP060401.1     UCGUACUA..AAG......................UUUUA...CUUGGUG.CAGU.AAUUCUGGCU..UCGAC.UCUGUUAGCAGGU.UGUU............CG..AGUG...CAACU.AAAGUUGAACAACUCGCAUCU................CAG...GUU.C..AGAC.U..........................................CUGGGUUCUAAAGU...UGACCA...............GCUGAGCAAUGACCUCAGUUCUGU..............................UCGUUCUGAUGUAC..AA.UCA
   NZ_CP065178.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUUGCUGGU.UGUU............CA..AGCA...AUGCU.AAAAUUGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGCUCUGACGUAC..AA.GCU
   NZ_CP065534.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUUCUGGGU..UCUAC.UCUGCUGGCUGGC.UGUU............CU..AGCA...AUGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACAGUAAAGU...UGAUCA...............GCUGUCCAACGAUGUAACCGCAAU..............................CCGCUCUGAUGUAC..AG.GCU
   NZ_CP065626.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CCGU.UAUCCUGGGU..UCUAC.UCUGCUGGCUGGC.UGCU............CU..UCUA...ACGCG.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.C..........................................CUGAACACCAAAGU...UGACCA...............GCUGUCUUCUGACGUGAACGCAAU..............................GCGCGCUGACGUUC..AG.GCU
   NZ_CP066092.1     AAUGAAAA..AAU......................UGUUG...UUGGUAG.--GU.GUUGUUGGUCugUCCGC.UCUGCUGGGUGGU.UGCG............CA..AACA...C---U.---AGCGAACUGGAAACUUCC................GUU...---.C..AGAA.U..........................................CUGUCUAACAAAGU...UGACCA...............GCUGGCUCAAGAUGUUAGCGCUGU............................ucGUGCUGAUCAGUCC..--.---
   NZ_CP069213.1     CG-CGCCC..AG-......................AGGCG...CGUUUUUuAGCU.AAGACAGAGU..CUUAU.--UGCUGCAGCCU.UACU............GC..AGCA...AAGAU.A------------UGUCGGC-................GAC...GUG.C..AGGA.A..........................................CUGGUCGCGCAGGU...UGCCAA...............GCAGUGCCAGGCGGUUGUUGCGAA..............................GCGCUGCAU-----..CG.UCG
   NZ_CP071320.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCCAC.UCUGCUGGCUGGC.UGCU............CU..AGCA...ACGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGAUCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCUGACGUUC..AA.GCG
   NZ_CP071405.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AGUUCUGGCU..UCAAC.UAUGCUGGCUGGU.UGCU............CA..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCA................GAC...GUU.C..AGAC.U..........................................CUGAACGCGAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAGU..............................GCGUUCAGACGUUC..AG.GCU
   NZ_CP071409.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUUCUGGGU..UCUAC.UCUGCUGGCAGGC.UGUU............CU..GGCA...AUGCU.AAAAUUGACCAGCUGUCUACC................GAU...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGAUCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.GCG
   NZ_CP071802.1     UCGUACUA..AAC......................UUGUA...CUGGGCG.CGGU.AAUUCUGGCU..UCUAC.UAUGCUGGCUGGC.UGUU............CA..AGCA...AUGCU.AAAAUUGAUCAACUGUCUUCA................GAC...GUU.C..AAAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.GCA
   NZ_CP071804.1     UCUGG---..---gguuccg......gcguagaa.---CC...CCGUAUUgCGAU.GAUCCUGAGC..UCAAC.UAUGCAGGCAUGA.AAUC............CC..UGCA...AAAAC.-ACCUGGAUGAAAUGUAUACC................UAC...AUC.C..----.-..........................................--GGAACAAUAAGA...UGAUGA...............UCCCA--AACUACG---GUGAAAU..............................GCAC--CGG--UAC..GG.AGA
   NZ_CP072455.1     UCGUACUA..AAG......................UUGUA...CUUGGCG.CAGU.AAUUCUUGCU..UCUAC.UAUGUUAGCGGGU.UGUA............CA..AGCC...CGCCU.AAAGUUGACCAGCUUUCCUCU................CAG...GUU.C..AAAC.U..........................................CUGGGUUCAAAAGU...UGACCA...............ACUGAGCAAUGAGGUUAGCUCAAU..............................GCAUUCUGAUGUAC..AA.ACA
   NZ_CP072652.1     UCGUACUA..AAC......................UGGUA...CUGGGCU.CAGU.AAUCCUAGGU..UCCAC.UCUGCUGGCAGGC.UGCU............CA..AGCA...AUACU.AAAAUCGAACAACUGUCUACU................GAC...GUU.C..AAAC.C..........................................CUGAACGCUAAAGU...UGAUCA...............GCUCAGCAACGAUGUAACUGCAAU..............................CCGUUCUGACGUUC..AA.GCU
   NZ_CP073262.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGC.UGUU............CA..AGCA...AUGCU.AAAAUUGAUCAGCUGUCUACC................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAGU..............................GCGUUCUGACGUUC..AG.GCU
   NZ_CP074352.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCCGACGUAC..AG.GCU
   NZ_CP075188.1     AUCUC-GC..AAC......................A--AG...UUGGUCC.UGGG.CACGCUGGCG..GCUGC.UGUGCUGGCAGGU.UGUU............CC..AGCA...UGGAG.AUGGCGACGCCACCGGCUGCA................GUC...GCU.-..--G-.-cgcuggaagcgaagucaggcagcacgguuagcggcaagguca--------------...------...............GCU--UUUUCGGCAUGAC--CAAC..............................GGGGUCC--GGGUC..GA.GGC
   NZ_CP075564.1     AAUGAAGA..AAA......................UGUUG...UUGGUAG.GUGU.UGUUGGUCUG..UCUGC.CCUGCUGGGCGGU.UGUG............CA..AACA...CCA--.----GCG---AACUGGAAACU................UCC...GUU.C..AGAA.U..........................................CUGUCUAACAAAGU...UGACCA...............ACUGGCUCAAGAUGUUAGCGCAGU............................ucGUGCUGAU-CAAUC..CA.A--
   NZ_CP077262.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCAGGU.UGCU............CC..AGCA...AUGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCCGACGUUC..AG.GCU
   NZ_CP077366.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AGUUCUGGCU..UCAAC.UAUGCUGGCUGGU.UGCU............CA..AGCA...ACGCU.AAAAUCGACCAGCUGUCUUCA................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAGU..............................GCGUUCAGACGUUC..AG.GCU
   NZ_CP079742.1     AAUGAAAA..AAU......................UGUUG...UUGGUAG.GUGU.UGUUGGUCUG..UCUGC.CCUGCUGGGCGGU.UGUG............CU..AACA...CCAGC.---------GAACUGGAAACC................UCC...GUA.C..AGAA.C..........................................CUGUCUAACAAAGU...UGACCA...............ACUGGCUCAAGAUGUUAGCGCUGU............................ucGUGCUGAUCAAUCC..AA.AAU
   NZ_CP081864.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCUUGGGU..UCUAC.UCUGCUGGCAGGC.UGCU............CC..AGCA...AUGCU.AAAAUUGACCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGAUCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGCGCUGAUGUAC..AG.GCU
   NZ_CP082141.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCAAC.UAUGCUGGCUGGU.UGCU............CA..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUACC................GAC...GUG.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AG.GCU
   NZ_CP082346.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGU.UGCU............CA..AGCA...ACGCU.AAAAUCGACCAGCUGUCUUCA................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AG.GCU
   NZ_CP082787.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCCAC.UAUGCUGGCAGGC.UGCU............CU..AGCA...ACGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.GCA
   NZ_CP083448.1     ACGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGU.UGCU............CA..AGCA...ACGCU.AAAAUCGACCAGCUGUCUUCA................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAGU..............................GCGUUCUGACGUUC..AG.GCU
   NZ_CP083638.1     AUCUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCCGACGUUC..AG.GCU
   NZ_CP084032.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUUGCUGGU.UGUU............CA..AGCA...ACGCU.AAAAUUGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGCUCUGACGUAC..AA.GCU
   NZ_CP084222.1     UCGUACUA..AAG......................UUGUA...CUGGGCU.CUAU.CGUUCUGGCU..UCUGC.UUUGUUAGCAGGC.UGUU............CA..AACA...GUAGC.CAAAUUAACAAACUGUCCUCA................GAU...GUU.C..AAAC.G..........................................UUAAACGGUAAAGU...CGAUCA...............ACUAUCAAAUGACGUUC-------aguca.................uuacgu..----ACUGAUGUUC..AG.ACU
   NZ_CP084351.1     AGCUUUUA..AAA......................UGAAA...AAAAUGU.---U.GUUGGUAGGU..GUUGU.UGGUCUGUCCG--.----cucugcugg...GC..GGUU...GUGCA.AACACCAGCGAACUGGAAACU................UCC...GUU.C..AGAA.U..........................................CUGUCUAACAAAGU...UGACCA...............ACUGGCUCAAGAUGUUAGCGCUGU............................ucGUGCUG--A-----..--.---
   NZ_CP084521.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CUGU.UAUCCUGGGU..UCUAC.UCUGCUGGCUGGC.UGCU............CU..UCCA...ACGCU.AAAAUCAACCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACACCAAAGU...UGACCA...............GCUGUCUUCUGACGUGAACGCAAU..............................GCGCGCUGACGUUC..AG.GCU
   NZ_CP086253.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUUCUGGGU..UCUAC.UCUGCUUGCUGGU.UGUU............CA..AGCA...AUGCU.AAAAUUGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGCUCUGACGUAC..AA.GCU
   NZ_CP087392.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUUGCUGGU.UGUU............CA..AGCA...ACGCU.AAAAUUGAUCAGCUGUCUUCC................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGCUCUGACGUAC..AA.GCU
   NZ_CP087711.1     CAAGACCA..AAU......................UAAUU...CUGGGUA.CCAU.CGUACUGAGC..UCCAC.UCUGCUGGCUGGU.UGUG............CU..AACA...CC---.AA-------------------gcugga...gcagagc---...GUUgC..UGA-.U..........................................CUGAACACCAAAGU...UGACCA...............GCUGGCUACUGACGUAGGUUCUUU..............................GCGUACCGACGUAC..AA.GAU
   NZ_CP087880.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCAGGU.UGCU............CC..AGCA...AUGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCCGACGUUC..AG.GCU
   NZ_CP089919.1     UCGCACUA..AAC......................UGGUA...CUGGGCG.CUGU.AAUCCUGGCU..UCAAC.UAUGCUGGCUGGU.UGUU............CA..AGCA...AUGCU.AAAAUCGACCAACUGUCUUCA................GAC...GUU.U..CUAC.U..........................................CUGAACUCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................GCGUUCUGACGUUC..AA.GCA
   NZ_CP089932.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CAGU.GAUACUGGGU..UCAAC.UCUGCUGGCUGGU.UGCU............CA..AGCA...AUGCU.AAAAUCGACCAGCUGUCUACC................GAC...GUU.C..AGAC.U..........................................CUGAACGCGAAAGU...UGACCA...............GCUGAGCAACGAUGUGAACGCAAU..............................CCGUUCUGACGUUC..AG.GCU
   NZ_CP090968.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CUGU.UAUCCUGGGU..UCUAC.UCUGCUGGCUGGC.UGCU............CU..UCCA...ACGCU.AAAAUCGACCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACACCAAAGU...UGACCA...............GCUGUCUUCUGACGUGAACGCAAU..............................GCGCGCUGACGUUC..AG.GCU
   NZ_CP093242.1     UCGUACUA..AAC......................UUCUA...CUGGGCU.CUAU.UGUUCUAGCU..UCAGC.AUUACUGGCGGGU.UGUU............CU..AACA...GCACU.GAAGUGCAGAAACUCUCUUCA................GAU...GUU.C..AAAC.A..........................................CUGAAUGGUAAAGU...UGAUCA...............AUUAAGUAACGAUGU---------ucaaacu.............cuacguac..------UGACGUAC..AA.GCA
   NZ_CP093328.1     UCGCACUA..AAC......................UGGUA...CUGGGCG.CUGU.AAUCCUGGCU..UCAAC.UAUGCUGGCUGGU.UGUU............CA..AGCA...AUGCU.AAAAUCGACCAACUGUCUUCA................GAC...GUU.U..CUAC.U..........................................CUGAACUCUAAAGU...UGACCA...............ACUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.GCA
   NZ_CP093334.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...AUGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCUGACGUCC..AG.GCU
   NZ_CP095443.1     UCGUACUA..AAA......................UUGUA...CUGGGCU.CUAU.CGUAUUAGCU..UCAGC.AUUACUGGCGGGU.UGUU............CU..AACA...GCACU.GAAGUGCAAAAACUCUCUUCA................GAC...GUG.C..AAAC.U..........................................CUGAAUGGUAAAGU...UGAUCA...............ACUGAGCAACGAUGUUCAGACUAU..............................CCGUGCUGAAGUAC..AA.GCU
   NZ_CP096201.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCAGGU.UGCU............CC..AGCA...AUGCU.AAAAUCGAUCAGCUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCCGACGUUC..AG.GCU
   NZ_CP097750.1     UCGUAAUA..GAU......................UAAUA...UGUUCUG.CAAU.UAUUUUGAGU..UCUUU.CGUAUUGGUUAGU.UGUG............CG..AGCA...CAACU.AAAAUAAAAGAAUUAUCUUCU................GAA...GUA.C..AUGA.U..........................................UUAAACGAAAGAAU...UGAUCA...............AAUAAGCAGCGACAUUGAUGUUUU..............................GCGUCCUGAAAUAG..AA.AAA
   NZ_CP097765.1     UAGUAAUA..GAU......................UAAUA...UGUUCUG.CAAU.UAUUUUGAGU..UCUUU.UGUAUUGGCUAAU.UGUG............CG..AGCA...CAACU.AAAAUAAAAGAAUUAUCUUCU................GAA...GUG.C..AUGA.U..........................................UUAAACGAAAGAGU...UGAUCA...............AAUAAGCAGCGACAUUGAUGUUUU..............................GCGCCCUGAAAUAG..A-.---
   NZ_CP107077.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...ACGCU.AAAAUCGAUCAGCUGUCUUCU................GAU...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAGU..............................GCGUUCUGACGUUC..AG.GCU
   NZ_CP109947.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCUAC.UCUGCUGGCAGGU.UGCU............CC..AGCA...AUGCA.AAAAUUGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............ACUGAGCAAUGAUGUGAACGCAAU..............................CCGCUCUGACGUAC..AG.GCU
   NZ_FO704550.1     UCGUACUA..AAG......................UUGUA...UUUGGUG.CAGU.AAUUCUGGCU..UCCAC.CCUGCUGGCAGGU.UGCU............CA..AGCG...CAACG.AAAGUUGAACAGCUUGCUUCU................CAG...GUG.C..AAAC.U..........................................CUCGGUUCUAAAGU...UGACCA...............AUUGAGCAGUGACAUCAGUUCUAU..............................UCGUUCUGAUGUAC..AA.UCA
   NZ_FO704551.1     UCGUACUA..AAG......................UUGUA...UUUGGUG.CAGU.AAUUCUAGCU..UCUAC.UCUGUUAGCAGGC.UGUU............CA..AGCG...CAACU.AAAGUUGAACAACUCGCCUCU................CAG...GUA.C..AAAC.U..........................................CUCGGUUCUAAAGU...UGACCA...............GUUGAGCAGUGACCUUAAUUCGGU..............................UCGUUCUGAUGUAC..AG.UCA
   NZ_LN999833.1     UCGUACUA..AAC......................UGGUA...GUGAGCG.CGAU.AAUUCUGGGU..UCCAC.UCUGCUGGCUGGU.UGCU............CU..AGCA...ACGCU.AAAAUCGAUCAGCUGUCCUCC................GAU...GUU.C..AGAC.U..........................................CUGAACGCCAAAGU...UGACCA...............GAGCAGCAACGACGUGAAUGCUUU..............................GCGUUCCGACCUAC..AG.UCC
   NZ_LR134201.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCUAC.UAUGCUGGCAGGU.UGUU............CU..UCUA...ACGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGAUCA...............GCUGAGCAACGACGUGAACGCAGU..............................GCGUUCCGACGUUC..AG.GCU
   NZ_LR134376.1     AAUGAAAA..AAU......................UGUUG...UUGGUAG.GUGU.UGUUGGUCUG..UCUGC.CCUGCUGGGCGGU.UGUG............CG..AACA...CCA--.----GCGA---ACUGGAAACC................UCC...GUU.C..AGAA.U..........................................CUGUCUAACAAAGU...UGACCA...............ACUGGCUCAAGAUGUUAGCGCAGU............................ucGUGCUGAUCAAUCC..AA.GAU
   NZ_LR134494.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCCAC.UAUGCUGGCUGGC.UGUU............CA..AGCA...AUGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................CCGUUCUGACGUUC..AA.GCA
   NZ_LR699007.1     UCGUUCUA..AGA......................UUGUA...UUAGGUG.CUGU.AGUUUUAGCU..UCUGC.AUUAUUAGCAGGU.UGUU............CU..UCUA...ACGCU.AAAUUUGACCAACUGGACAAC................GAC...GUU.A..AGAC.G..........................................CUGAAUGCCAAAGU...UGAUCA...............ACUGAGCAACGACGUUAACGCAAU..............................CCGCGCUGAUGUUC..AG.CAG
   NZ_LR890047.1     UUGUACUA..AAA......................UAUUAcuaCUUAGUU.CCCU.AAGUCUAGCA..UCUAC.UAUGCUGGUUGGA.UGUG............CU..AGUA...AUGCU.AAAAUAGACCAACUGUAUACU................AAU...AUU.C..AAAA.U..........................................UUAGACAAUAAAUG...CGCUCA...............GCUCAGUGACGACAUUAACUCAAU..............................GCGUAGUGAUGUU-..--.CAA
   NZ_LS483422.1     UCGUACUA..AAA......................UUGUA...CUGGGCU.CUAU.CGUAUUAGCU..UCAGC.AUUACUAGCGGGU.UGUU............CU..AACA...GCACU.GAAGUGCAAAAACUCUCUUCA................GAC...GUA.C..AAAC.G..........................................CUGAAUGGUAAAGU...UGAUCA...............GCUGAGCAACGAUGUUCAGUCACU..............................GCGUUCUGACGUUC..AA.ACA
   NZ_LT615367.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGGU..UCAAC.UCUGCUGGCUGGU.UGCU............CC..AGCA...AUGCU.AAACUGGAUCAGCUGUCUUCU................GAC...GUU.U..CUUC.U..........................................CUGAACGAGAAAGU...AUCUGC...............UCUGACCAGCAAAGUUGACGCUCU..............................GGCUACCGACGUAC..AG.GCU
   NZ_LT906479.1     UCGUACUA..AAC......................UGGUA...CUGGGCG.CGGU.AAUCCUGGCU..UCCAC.UAUGCUGGCAGGC.UGCU............CU..AGCA...ACGCU.AAAAUCGAUCAACUGUCUUCU................GAC...GUU.C..AGAC.U..........................................CUGAACGCUAAAGU...UGACCA...............GCUGAGCAACGACGUGAACGCAAU..............................GCGUUCUGACGUUC..AA.GCU


   Structure         ((((((((...........................)))))...(((((((.((.......................((((((......................))..)))).......................(((....................)))...(((.(..((..............................................))))))((...(((........................)))..))........((((((.................................)))))))).)))))..)).)))


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lpp



Position: 141-275, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R A R Y R Y U R R Y Y R U R U Y U R R Y Y C R Y Y U R Y U R G Y G G Y U G Y C A R C A Y R Y R R R Y Y Y G U Y A R R Y U R R Y R A R G U U G A Y A R Y Y R Y R Y G A Y R U Y Y Y R R R C R R 5'