ispZ-ispU-cdsA-bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE-accA-rseP



Position: 8172-8331, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.C) Reactivity: nanC Position: 33 (position.label in template: 33.A) Reactivity: nanA Position: 34 (position.label in template: 34.A) Reactivity: nanA Position: 35 (position.label in template: 35.C) Reactivity: nanC Position: 36 (position.label in template: 36.A) Reactivity: nanA Position: 37 (position.label in template: 37.A) Reactivity: 1A Position: 38 (position.label in template: 38.C) Reactivity: 1C Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.C) Reactivity: 0C Position: 41 (position.label in template: 41.A) Reactivity: 0A Position: 42 (position.label in template: 42.A) Reactivity: 1A Position: 43 (position.label in template: 43.C) Reactivity: 1C Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.C) Reactivity: 0C Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.C) Reactivity: 0C Position: 55 (position.label in template: 55.A) Reactivity: 0A Position: 56 (position.label in template: 56.C) Reactivity: 0C Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.A) Reactivity: 1A Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 1A Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 1A Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.C) Reactivity: 0.5C Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.A) Reactivity: 1A Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.A) Reactivity: 0A Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.C) Reactivity: 1C Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.C) Reactivity: 0.5C Position: 90 (position.label in template: 90.A) Reactivity: 0A Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.A) Reactivity: 1A Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.A) Reactivity: 0.5A Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.C) Reactivity: 0C Position: 102 (position.label in template: 102.C) Reactivity: 0C Position: 103 (position.label in template: 103.A) Reactivity: 0A Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.A) Reactivity: 0.5A Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.C) Reactivity: 0.5C Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.C) Reactivity: 0C Position: 114 (position.label in template: 114.A) Reactivity: 0A Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.C) Reactivity: 0.5C Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.C) Reactivity: 0C Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.C) Reactivity: 1C Position: 127 (position.label in template: 127.A) Reactivity: 0.5A Position: 128 (position.label in template: 128.C) Reactivity: 0.5C Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.A) Reactivity: 0.5A Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.C) Reactivity: 0C Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.C) Reactivity: 0C Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.C) Reactivity: 0C Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.C) Reactivity: 0C Position: 149 (position.label in template: 149.C) Reactivity: 0C Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.C) Reactivity: 1C Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.C) Reactivity: 0C Position: 160 (position.label in template: 160.A) Reactivity: 0A Position: 161 (position.label in template: 161.G) Reactivity: nanG Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.A) Reactivity: 1A Position: 164 (position.label in template: 164.C) Reactivity: 0C Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.U) Reactivity: nanU Position: 167 (position.label in template: 167.C) Reactivity: nanC Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.C) Reactivity: nanC Position: 172 (position.label in template: 172.C) Reactivity: nanC Position: 173 (position.label in template: 173.U) Reactivity: nanU Position: 174 (position.label in template: 174.U) Reactivity: nanU Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.U) Reactivity: nanU Position: 177 (position.label in template: 177.G) Reactivity: nanG Position: 178 (position.label in template: 178.U) Reactivity: nanU Position: 179 (position.label in template: 179.C) Reactivity: nanC Position: 180 (position.label in template: 180.A) Reactivity: nanA Position: 181 (position.label in template: 181.U) Reactivity: nanU Position: 182 (position.label in template: 182.U) Reactivity: nanU Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.C) Reactivity: nanC Position: 185 (position.label in template: 185.G) Reactivity: nanG Position: 186 (position.label in template: 186.C) Reactivity: nanC Position: 187 (position.label in template: 187.A) Reactivity: nanA Position: 188 (position.label in template: 188.G) Reactivity: nanG Position: 189 (position.label in template: 189.G) Reactivity: nanG Position: 190 (position.label in template: 190.G) Reactivity: nanG Position: 191 (position.label in template: 191.U) Reactivity: nanU Position: 192 (position.label in template: 192.A) Reactivity: nanA Position: 193 (position.label in template: 193.A) Reactivity: nanA Position: 194 (position.label in template: 194.C) Reactivity: nanC Position: 195 (position.label in template: 195.C) Reactivity: nanC Position: 196 (position.label in template: 196.A) Reactivity: nanA Position: 197 (position.label in template: 197.C) Reactivity: nanC Position: 198 (position.label in template: 198.G) Reactivity: nanG Position: 199 (position.label in template: 199.C) Reactivity: nanC Position: 200 (position.label in template: 200.A) Reactivity: nanA Position: 201 (position.label in template: 201.3')3' 10 20 30 50 100 150


ispZ-ispU-cdsA-bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE-accA-rseP



Position: 8172-8331, Conformation: #1







Retained alignments:


   NC_002932.3       G..CG....U.GA...UCGG..CAA..CCA..U....G..UG...GUGA.UCGCC.AA.CUCGGUGCAG-u................................................u.U.G.G.CGG..CC..AC...UG-...CC....A.UGUGG......G..CG.AUU...A...C.GUG...G...U..G..G.U..G.G..G...C.GGUC.U.G.GC.CGG.A.G.UGC...AC.C.A.GY.U.C...-.G-...-.-.-...-.-...-ucagga...........................................uugggc...-.-.-.-.G.G..U..A.CG.......C..G..A..UG.G...U.U.G....GC..GG..C........A..U.C..U....C...C..CG..C.G...C.G.G......C.G..C........U.U.G..A....UG.....UC...C..C..A...CC..C.....U.UU...GU....C.A...U.GG...C.U.G.-.G-..-.U...G.-.....................g...GC..A.....U.G.C.C
   NC_003910.7       G..UA....UuGU...UGGA..AGU..CA-..U....U..GC...AUUU.UCGCA.AA.UAAUGCUUCUA...................................................U.U.G.CUG..GU..CA...CGU...CC....A.UGUAG......G..UG.ACC...A...C.GCU...A...U..U..A.U..U.G..G...U.GGUA.U.G.GU.AGG.U.G.UUC...AU.C.A.AU.U.C...U.GC...C.A.U...A.U...U..........................................................-.-.G.G.C.G..C..A.CA.......U..A..GuuUU.A...U.U.G....CUggUA..A........U..G.C..C....C...U..AA..U.A...C.U.U......A.-..-........A.A.G..A....UG.....UU...C..C..U...GC..U.....U.AU...GU....U.A...U.GG...C.UuC.A.GG..U.C...A.A.........................CC..G.....-.G.C.U
   NC_004347.2       G..UG....U.GG...UGGG..UAA..UAA..C....G..UG...AUUA.UGGCU.AA.CAAUGCGUCUA...................................................U.U.G.CAG..GC..CA...UGU...GC....A.UGUCG......G..UG.ACU...G...G.GCG...A...U..U..C.U..U.G..G...C.GGCA.U.G.AC.UGG.C.G.UGC...AC.C.A.AU.U.U...GuGC...A.U.-...A.U...U..........................................................G.G.U.G.C.C..C..A.UG.......C..U..U..UU.A...C.U.G....CC..GG..U........U..G.C..U....C...G..UU..A.U...U.G.C......U.A..C........A.G.G..A....UG.....UG...C..C..A...CC..C.....U.UU...GU....G.A...U.GG...C.U.G.CgGG..U.C...A.G.........................CC..-.....C.G.C.G
   NC_004917.1       G..CA....U.UG...UAGG..AAA..UGA..U....U..GU...AUUC.UUGCA.AA.UAAUGCUACGC...................................................U.U.G.GUG..GG..CA...CGU...AG....A.GCUUG......G..UG.AUU...A...U.GUU...A...A..U..A.U..C.G..G...G.GGAU.U.G.AC.ACC.C.G.UGC...AU.C.A.AU.U.U...G.UC...A.-.-...-.-...-aaguc.............................................ggaga...-.-.U.G.G.U..U..G.UA.......U..G..A..UA.G...C.A.G....--..-G..A........G..G.C..U....C...U..GU..U.U...U.A.A......C.A..C........A.G.G..A....UA.....UG...C..C..U...CC..A.....U.AU...UG....C.U...U.GG...C.A.G.A.AG..G.C...A.A.........................UA..G.....G.G.C.U
   NC_005126.1       G..UA....U.UG...UCGG..UGA..CCG..U....U..GU...GUCA.UUGCU.AA.UAAUGGUACUU...................................................U.G.G.GGG..GG..CA...UGU...UA....U.CUUGG......G..UG.AUU...A...U.GUC...A...U..C..A.U..U.G..G...U.GGUA.U.G.AG.UGC.G.A.UUC...AU.C.A.GU.U.U...U.GU...C.A.G...A.U...U..........................................................-.-.G.G.C.U..C..U.CA.......U..GcuA..UG.G...U.G.G....GC..GG..G........U..G.U..U....C...C..GG..U.G...U.G.G......U.A..C........A.G.G..A....UA.....UU...C..C..G...CC..A.....U.AC...GU....U.A...U.UG...C.U.C.A.GG..G.G...A.A.........................UC..A.....U.G.C.A
   NC_006138.1       G..UA....U.CC...UUGG..CAA..CCA..U....A..UU...AUUC.UGGCC.AA.UGUGGCAACCU...................................................U.G.G.CAG..GU..CA...UGU...AG....A.GGUGG......G..GG.ACA...G...-.GGC...A...U.cG..A.U..U.G..G...U.GGUC.U.U.GU.CGC.U.A.UUC...AU.C.A.GU.U.U...U.GU...C.G.U...A.U...U..........................................................G.G.U.G.A.G..U..AuAG.......C..U..A..UG.-...U.C.G....GC..GG..C........C..U.U..U....C...U..GG..G.C...U.U.A......G.C..C........U.U.G..A....UG.....UG...C..C..G...CC..C.....U.AU...AU....U.A...U.UG...U.C.U.C.CG..G.U...A.C........................cCG..G.....G.G.C.A
   NC_006512.1       G..UG....U.CA...UAGG..UAA..UGA..C....A..AU...AUCU.UUGCU.AA.UCAGGUUACUC...................................................U.G.G.CUG..GC..CA...UGU...UC....A.CGUAG......G..CG.ACU...G...G.GUU...A...U..U..C.U..G.G..G...U.GGCA.U.G.AG.UGG.U.G.UGC...AU.C.A.AU.U.U...-.--...-.-.-...-.-...-ugucauauugguu............................cucacucuuuugcc...-.-.-.-.-.-..-..-.--.......-..-..-..--.-...-.-.G....CG..GU..U........A..A.C..U....C...U..AU..U.A...U.C.G......U.U..C........A.G.G..A....UA.....UU...C..C..U...CC..U.....U.UU...GU....G.A...U.GG...C.G.C.A.GG..G.U...C.A.........................UA..A.....C.G.C.C
   NC_006513.1       G..CG....C.GG...UCGG..CGA..CCA..C....A..CG...AUCU.UCGCC.AA.CAACGCGACGC...................................................U.C.G.CCG..GG..CA...UGU...GC....A.CGUCG......G..CG.ACU...G...G.GCG...A...U..A..C.U..C.G..G...C.GGCU.U.C.AC.CGG.C.G.UGC...AU.C.A.GU.U.C..gU.GC...G.C.G...U.C...G.........................................................gC.G.C.G.C.A..C..A.GU.......U..U..C..UG.C...-.-.G....GC..GU..C........G..G.C..A....C...C..GU..G.C...U.G.C......U.G..C........A.G.G..A....UC.....UG...C..C..G...CCguU.....C.GU...GA....C.C...G.UC...G.C.C.-.GG..C.A...A.U.........................CC..G.....G.C.C.A
   NC_007292.1       G..CA....U.AA...UAGG..AGA..UCA..U....U..GU...GUCA.UGGCU.AA.CAACGUUACCC...................................................U.A.G.GAG..GG..CA...CGU...AA....G.AGUAG......A..UA.AUC...A...C.ACU...A...U..U..A.U..U.G..G...A.GGAA.U.G.AC.CGC.G.A.UCC...AU.C.A.AU.U.U...U.GU...A.U.U...A.U...U..........................................................G.G.A.A.C.A..C..A.UG.......U..U..A..UG.A...U.U.G....GA..GG..A........U..G.U..U....C...U..GG..U.G...U.A.G......U.U..C........A.A.G..A....UA.....UC...C..C..G...CC..A.....U.UC...AU....A.A...U.AG...C.C.C.A.AG..G.A...A.A.........................UC..A.....C.G.C.A
   NC_007510.1       G..CA....C.CG...UCGG..CAA..CCA..C....G..UG...AUCC.UGUCG.AG.CAACGCACAGA...................................................U.G.G.CCG..GC..CA...CGU...CG....A.GAUCG......G..CG.ACU...G...G.GCG...A...U..C..G.U..C.G..G...C.GGGA.U.G.UC.GGG.C.G.UCC...AC.C.A.GU.U.C...G.UG...C.G.C...A.U...C..........................................................G.G.U.G.C.G..C..A.CU.......C..G..A..UG.C...U.G.G....GC..GG..U........G..C.G..U....C...C..G-..C.G..cU.C.G......U.G..C........A.G.G..A....CA.....UU...C..C..G...CC..G.....U.UC...GU....G.A...U.CG...C.G.G.C.AG..G.C...A.A.........................CA..A.....G.GcC.G
   NC_007517.1       G..CG....U.UG...UCGG..CAA..CCG..G....G..UC...AUCA.UGGCC.AA.CGGAUCGACCC...................................................U.G.G.CGG..GG..CA...CGU...GG....U.GGUGG......A..GG.AUC...A...U.GCC...A...U..U..C.U..C.G..G...C.GGGC.U.U.UC.CGC.C.G.UGC...AC.C.A.AU.U.-...-.--...-.-.-...-.-...-cacgcggguug................................gcgagagcgcca...-.-.-.-.-.-..-..-.--.......-..-..-..UG.C...U.C.U....CC..GG..C........G..G.C..G....C...C..AU..G.G...U.G.G......G.G..C........A.G.G..A....UG.....UC...C..U..C...CC..C.....U.AU...AC....C.A...U.CG...C.C.A.G.CG..G.C...A.A.........................CC..G.....G.G.C.C
   NC_007614.1       G..CC....A.GG...UGGG..UAA..CUU..C....A..CG...ACCU.UUACC.AA.UAACGCUUCCC...................................................U.G.G.CCG..GC..CA...UGU...CC....A.GGUGG......G..UG.AUU...A...C.GCG...G...G..A..C.U..C.G..G...G.GGAU.U.C.AC.CUC.C.G.U--...--.-.-.--.-.-...-.--...-.-.-...-.-...-ucaucaguucguucgcgugg...............gcgccuacagcuuuaccggu...-.-.-.-.-.-..-..-.--.......-..-..-..--.-...-.-.U....UA..GG..C........A..-.-..-....C...C..GU..G.C...U.G.A......C.U..C........A.G.G..A....CC.....UG...C..C..A...CC..U.....U.AU...CU....C.C...U.GG...C.G.G.C.GG..G.A...A.A.........................UC..C.....C.G.C.C
   NC_007626.1       G..CA....U.CC...UGGG..CGA..CAA..U....G..UC...AUCA.UGGCC.AA.CAACGCCACCC...................................................U.G.G.CGG..GU..CA...UGU...GA....C.GGUCG......G..CG.AAU...A...C.GCC...U...U..C..C.U..G.G..G...C.GGGC.U.G.UC.GGC.G.G.UGC...AC.C.A.GU.U.C...G.UG...C.G.C...A.U...C..........................................................G.G.U.C.G.C..C..A.CG.......C..C..A..UG.A...U.C.G....GC..GG..C........A..U.G..U....C...G..GG..C.G...UcG.A......G.G..C........G.G.-..A....CG.....UC...A..U..U...CC..C.....U.UC...GG....C.A...U.GG...U.G.A.U.CG..G.U...A.A.........................CC..G.....G.G.C.C
   NC_007645.1       G..UG....U.GG...UUGG..GAA..UAA..U....U..GU...AUUC.UGGCC.AA.UAUGACUACCC...................................................U.U.G.CGG..GA..CA...UGU...GC....A.UAUUG......G..CG.ACU...G...G.GCG...A...U..U..C.U..U.G..G...C.GGCG.G.C.AC.CAU.G.G.UGC...AC.C.A.AU.U.U...U.GC...A.A.G...A.U...U..........................................................G.G.U.G.A.G..C..A.CA.......G..C..A..UG.U...G.C.G....CU..GG..C........G..G.C..A....G...U..AU..C.G...U.G.U......U.G..A........A.G.G..A....UA.....UC...C..C..C...GC..U.....U.AU...AU....U.A...U.GG...CcG.G.A.GG..A.C...A.A.........................UC..-.....C.G.C.U
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   NZ_LS483443.1     G..CG....U.GA...UUAA..AAA..CCG..C....U..GU...AUUU.UAGCC.AA.UAAUGCCACCC...................................................U.U.G.CCG..GA..CA...CGUggaAU....U.GG---......A..CG.AUU...U...C.GUG...A...U..U..G.U..C.G..G...C.GGAA.U.G.UC.UGC.G.A.UUC...AC.C.A.AU.U.C...G.UU...G.U.C...G.U...A..........................................................G.G.C.G.C.U..C..A.UG.......U..G..A..UG.U...U.G.G....GU..GG..Ug......gU..U.C..C....A...U..GG..U.C...A.G.C......-.-..C........A.A.G..A....UG.....UG...C..C..U...CC..A.....U.AU...GU....C.A...U.GG...C.A.C.A.AG..G.C...A.A.........................UC..A.....U.G.C.U
   NZ_LS483458.1     -..AA....U.UA...AAAA..CAA..---..C....U..GU...AUUU.UAGCA.AA.CAAUGCAACGC...................................................U.U.G.CUG..GU..CA...CGU...AG....A.AUUAG......A..UG.AUU...U...C.GUG...A...U..U..G.U..U.G..G...U.GGCA.U.G.UC.AGC.A.A.UUC...AC.C.A.AU.U.-...U.GU..aA.U.C...G.U...U..........................................................G.G.U.G.C.A..C..A.CG.......U..C..A..UG.U...U.A.G....GC..GG..C........G..G.U..U....C...U..AU..G.G...U.A.A......G.C..C........A.A.G..A....UG.....UA...C..C..U...CC..U.....U.AU...GU....U.A...U.GG...C.A.C.A.AG..G.C...A.A.........................CC..A.....C.G.C.C
   NZ_LS483470.1     G..CC....A.GA...UUGG..CAA..UCG..C....U..GC...AUUU.UCGCU.AA.CAACGCGACCC...................................................U.U.G.CUG..GG..CA...CGU...UG....A.GGUGG......A..CG.AUU...U...C.GCC...A...U..U..A.U..C.G..G...C.GGGA.U.G.AC.GGC.A.G.UGC...AC.C.A.GU.U.C...U.GC...A.U.U...A.U...U..........................................................G.G.C.G.C.U..C..A.CG.......U..A..A..UG.G...U.U.G....GC..GG..C........U..G.U..U....C...U..GG..C.G...U.C.G......C.U..C........A.G.G..A....CG.....UG...C..C..U...CC..U.....U.AC...CU....G.A...U.UG...C.G.C.A.GG..G.C...A.A.........................CC..A.....U.G.C.A
   NZ_LT615228.1     G..CC....A.AG...UAGG..UAA..UCA..C....A..CC...AUUU.UCUCA.AG.CAAUGCUCAAA...................................................U.U.G.CUG..GU..CA...UGU...GC....A.GGUUG......A..UG.AUU...G...G.GCG...A...U..U..A.U..G.G..G...U.GGUA.U.G.UC.UGG.C.G.UUC...AU.C.A.GU.U.C...-.GU...U.C.G...U.A...U..........................................................C.G.G.A.C.A.gC..A.UG.......C..G..A..UG.C...U.G.G....GC..GG..-........U..G.C..C....U...C..UG..C.A..uU.G.G......U.A..C........A.A.G..A....UA.....UU...C..C..U...CC..U.....U.UU...GU....G.A...U.UG...C.C.G.C.UG..G.C...G.A.........................CA..A.....A.G.C.U
   NZ_LT615367.1     G..CG....U.GG...UGGG..UAA..UCG..U....U..GU...AUUC.UGGCG.AA.CAAUGCCACGU...................................................U.G.G.GUG..GG..CA...UGU...GU....C.GGUAG......A..UG.AUU...U...U.GCG...A...U..U..A.U..C.G..G...C.GGCA.U.G.AC.AGC.G.G.UGC...AU.C.A.GU.U.C...U.GC...G.U.C...A.U...C..........................................................G.G.C.G.C.G..C..A.UG.......U..U..A..UG.G...U.G.G....GG..GG..C........U..G.C..U....C...U..GG..C.G...U.U.G......C.C..C........A.G.G..A....UG.....UG...C..C..G...CC..G.....U.AU...UU....G.A...U.UG...C.G.C.A.GG..G.U...A.A.........................UC..A.....C.G.C.G
   NZ_LT853882.1     G..CC....G.UG...UCGG..CAA..CCA..U....U..GC...GUGU.UCUCC.AA.CAACACCACGC...................................................U.G.G.CAG..GC..CA...CGU...CA....C.UGUGG......G..CG.ACU...A...C.GUG...A...U..C..A.U..C.A..G...C.GGCU.U.U.GC.CGG.C.G.CGC...AU.C.A.GU.U.C...U.GC...C.G.C...A.U...C..........................................................G.G.C.G.C.G..C..A.CG.......C..C..U..UC.C...U.G.G....GCauGG..G........C..G.C..G....C...U..GA..U.U...A.A.C......G.G..C........-.-.G..A....CG.....UU...C..C..G...C-..C.....G.UU...CA....C.C...A.UG...G.U.-.-.CG..G.C...A.G.........................CG..A.....A.U.C.G
   NZ_LT897836.1     G..CA....A.GG...UGGG..CAA..CCG..C....U..GC...AUUA.UGGCU.AA.UAAUGCAACAC...................................................U.A.G.GAG..GC..CA...UGU...AG....C.GUUAG......A..CG.AUU...A...U.GCC...A...U..A..A.U..A.G..G...C.GGUA.U.G.AC.CGC.G.G.UGC...AU.C.A.AU.U.U...U.GU...G.U.C...A.U...U..........................................................G.G.C.G.C.C..C..A.CG.......U..U..A..UG.A...U.C.G....GA..GG..U........U..G.C..U....C...C..GG..G.G...U.U.U......C.C..C........A.A.G..A....UG.....UA...C..C..G...CC..U.....U.UU...GU....U.A...U.CG...C.C.C.A.AG..G.C...A.A.........................UC..A.....U.G.C.G
   NZ_LT906434.1     G..CG....U.GG...UCGG..CAA..CCA..C....A..CC...AUUU.UUGCC.AA.CAACGCUUCUU...................................................U.A.G.CGG..GG..CA...UGU...UA....C.CAUCG......G..CG.ACU...AuguU.GUU...C...U..C..G.G..C.G..G...C.UACA.C.G.CU.GGU.U.U.U--...-C.C.A.AU.U.C...U.GC...C.A.A...A.-...-u.....................................................c...-.-.G.G.C.G..A..U.UA.......C..G..C..C-.-...A.U.G....AC..CG..C.......gU..U.U..G....C...C..GC..C.G...G.C.G......U.A..Ca.....uaA.A.G..A....CG.....UG...C..C..G...CC..G.....U.AU...GU....G.A...U.GG...CcG.C.A.GG..C.U...A.-.........................CC..G.....C.G.C.C
   NZ_LT906435.1     G..CC....A.CG...UCGG..UAA..UCAcaC....G..GU...GUUU.UCG--.AG.CAAUGCGCAGU...................................................U.G.G.CGG..GC..CA...CGU...CC....A.UGUCG......A..CG.ACU...G...G.GCC...A...U..C..A.U..U.G..G...C.GGUA.U.G.AC.CGG.U.G.UGC...AU.C.A.GU.U.C..gU.GC...G.U.-...A.U...C..........................................................G.G.U.G.C.U..C..A.CG.......C..G..A..UG.G...U.G.G....GC..GG..-........U..G.C..G....U...C..GG..U.G..cU.C.G......U.G..C........A.G.G..A....CG.....UG...C..C..G...UC..G.....U.UC...GU....G.A...U.CG...C.U.U.C.CG..G.U...G.A.........................UC..G.....U.G.C.G
   NZ_LT906448.1     G..UA....U.CA...AAAA..CCG..---..U....U..GU...AUUU.UAGCU.AA.UAACGCAACCC...................................................U.U.G.CAG..GU..CA...UGU...AG....A.AUUAG......A..UG.AUU...U...C.GUG...A...U..U..G.U..U.G..G...A.GGGA.U.G.UC.AGC.A.A.UUC...AC.C.A.AU.U.C...G.UU...G.U.U...G.U...A..........................................................G.G.G.G.C.G..C..A.CG.......U..A..A..UG.C...U.A.G....GU..GG..U........G..G.C..U....-...C..AA..U.G..gU.G.A......G.C..C........A.A.G..A....UG.....UG...C..C..U...CC..G.....U.AU...GU....A.A...U.GG...C.A.C.A.AG..G.C...A.A.........................UC..A.....C.G.C.A
   NZ_LT906463.1     G..UA....U.CA...UUAA..AAA..UCG..C....U..GU...AUUU.UGGCU.AA.CAACGCAACGU...................................................U.A.G.CAG..GA..CA...CGU...AG....A.ACUAG......A..UG.AUU...U...C.GUU...G...U..U..G.U..U.G..G...U.GGCA.U.G.UC.UGC.C.A.UUC...AC.C.A.AU.U.-...U.GU...UaU.C...A.U...U..........................................................G.G.A.G.C.G..C..A.UG.......U..C..A..UG.U...U.A.G....GU..GG..U........G..G.U..U....C...C..AU..G.G...U.C.A......G.C..C........A.A.G..A....UG.....UA...C..C..G...CC..U.....U.AU...GU....A.A...U.GG...C.U.C.A.AG..G.C...A.A.........................UC..A.....U.G.C.C
   NZ_LT906479.1     G..CG....U.GG...UGGG..CAA..CGC..C....U..GC...GUGC.UGGCG.AA.CAACGCUACGC...................................................U.G.G.CGG..GC..CA...UGU...GG....A.AGUGG......A..CG.AUC...A...C.GCC...A...U..C..A.U..C.G..G...C.GGCA.U.G.AC.GGC.G.A.UCC...AC.C.A.GU.U.C...U.GC...A.U.U...A.U...C..........................................................G.G.C.G.C.G..C..A.CG.......U..G..A..UG.G...U.C.G....GC..GG..U........U..G.C..U....C...C..GG..G.G...U.U.G......C.U..C........A.G.G..A....CG.....UG...C..C..U...CC..U.....U.UC...GU....C.A...U.CG...C.G.C.A.GG..G.C...A.A.........................CC..A.....C.G.C.G
   NZ_LT907988.1     A..UG....U.GG...GCGA..UCG..CAC..-....-..-C...AUCA.UCGCC.AA.CGGCGUGCAGC...................................................U.G.GgCGG..-C..CA...UGU...GC....A.CGUGA......A..CG.ACU...G...G.GCC...A...U..C..G.U..G.G..G...C.GGCC.U.G.AC.CGG.G.G.UGC...AC.C.A.GU.U.C...U.GC...A.A.G...A.U...C..........................................................G.G.C.G.C.G..C..A.UU.......G..C..A..UG.A...U.C.G....GC..GG..C........A..G.C..A....G...C..UC..C.A...U.C.G......U.G..C........A.G.G..A....CA.....UU...C..C..G...CC..U.....U.AC...GU....G.C...UgUG...C.G.C.G.GG..C.A...A.C.........................CC..C.....A.G.C.A
   NZ_LT960614.1     G..CA....A.GG...UCGG..CGA..CAA..C....G..UG...AUCC.UUGCC.AA.CAAUGCGACCC...................................................U.G.G.CCG..GG..CA...CGU...CG....A.GAUCG......G..CG.ACC...A...C.GUC...A...U..C..C.U..U.G..G...C.GGCC.U.C.AG.UGC.G.G.UCC...AU.C.A.GU.G.-...-.--...-.-.-...-.-...-ggugcgcaucgg...............................cgaccaugccuu...-.-.-.-.-.-..-..-.--.......U..G..U..UG.G...-.C.G....GC..AU..G........A..G.C..G....-...-..--..-.G...C.G.U......G.A..C........C.-.G..C....CG.....AU...C..U..CaucCC..C.....U.UC...GG....C.A...U.GC...U.G.A.C.GG..G.C...A.A.........................CC..G.....C.G.G.C
   NZ_OU342399.1     G..UA....A.GG...UUGG..AAA..UUA..U....U..GU...GUAU.UUUCU.AA.UAACAGUACUU...................................................U.A.G.CAG..GA..CA...CAU...AA....C.AAUUG......G..AG.AUU...A...U.GUA...A...U..U..C.U..G.G..C...U.GGUA.U.G.AC.CGC.A.A.UUC...AU.C.A.GU.U.U...U.GC...U.C.U...G.U...U..........................................................G.G.A.G.A.U..C..A.UGc....auU..U..A..UU.U...C.U.G....GA..GG..A........U..-.-..C....U...C..UA..G.U...U.C.G......U.A..A........-.A.G..A....UG.....UA...C..C..U...CC..C.....U.AC...GU....A.A...A.AG..cA.G.C.A.CG..U.G...A.A.........................CC..A.....C.U.U.U
   NZ_OU594967.1     G..CA....U.CA...UUGG..UGA..UAA..C....U..GC...AUUU.UUGCC.AA.UAAUGCGACAU...................................................U.A.G.CCG..GU..CA...UGU...AA....C.GAUUG......G..UG.AUU...A...U.GUA...A...U..U..U.U..U.G..G...U.GGAU.U.A.GC.UGC.A.A.UUC...AC.C.A.GU.U.U...G.GC...A.A.A...G.U...U..........................................................G.G.G.G.C.A..C..A.UG.......C..G..U..UU.A...U.U.G....GU..GG..-........A..U.G..U....G...C..AG..C.G...C.U.G......A.A..C........C.GcG..A....UG.....UA...C..C..G...CC..U.....U.AU...GU....G.A...U.GG...C.A.G.U.UG..G.U...A.A.........................CU..A.....U.G.C.G
   NZ_OU907312.1     G..UG....U.GG...UGGG..GAA..UCG..U....U..GU...AUCU.UUGCC.AA.UAACGCUACUU...................................................U.A.G.GGG..GG..CA...UGU...UC....A.GGUCG......A..UG.ACU...U...C.GCC...A...U..C..A.U..U.G..G...C.GGCA.U.G.UC.GGC.G.A.UUC...AU.C.A.GU.U.U...U.GU...A.U.U...G.U...G..........................................................G.G.U.A.U.G..C..A.UG.......U..G..A..UG.G...U.U.G....GC..GG..C........U..G.U..U....C...C..GG..G.G...U.C.U......C.C..C........A.A.G..A....UG.....UU...C..C..U...CC..G.....U.AU...AU....U.G...U.GG...C.C.C.A.AG..G.U...A.A.........................UC..A.....U.G.C.U
   NZ_OU912926.1     G..UC....A.GA...UCGG..AAG..CCA..C....A..CU...AUUU.UUGCU.AA.UAACGCAAGUC...................................................U.G.G.CCG..GA..CA...UGU...CA....A.GAUUG......C..UG.AUU...A...U.GCA...A...U..C..C.U..G.G..G...A.GGGU.U.U.UC.UAU.A.G.UGC...AC.C.A.GU.U.U...U.GU...C.A.A...A.U...U..........................................................G.G.C.A.U.G..C..A.UG.......C..G..A..UU.A...U.U.Gg..aAU..GG..G........A..U.C..Ug..uU...C..--..-.-...U.C.U......U.G..C........A.G.G..A....UG.....UU...C..C..G...CC..U.....U.AU...GU....U.A...C.AG...C.C.G.C.UG..G.C...A.A.........................CC..C.....G.G.C.U


   Structure         (..((......((....(((..(((..(((..................(.(((((.(................................................................).).).)))..)....................).))))).........((..((...(.....(((..........(..(.(..(.(..(.....((((......(.(((......((...((.(.(..........(.((...(.(.(....................................................................).).).).).)................)..)..)..)).)............))..))...........)..).)..)....)...)..))..).)..............).)..)........).).).......))..........)..)..)...))........).)).................((...(.(.....((....................................))........).).).)


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ispZ-ispU-cdsA-bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE-accA-rseP



Position: 8172-8331, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G Y R U G G Y R A Y R Y Y A U Y Y U G C A A Y A A Y G C R C Y U G C G G C A Y G U R U G R Y G A Y Y G Y A U Y U G G Y G G U C G R U C A Y C A R U U Y Y R R Y A Y R Y U Y G G Y G G Y Y Y R R U C A R G A Y R U C C C C U Y R U A U G Y G G R A Y G C 5'