ispZ-ispU-cdsA-bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE-accA-rseP



Position: 2786-2865, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.C) Reactivity: 0C Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.A) Reactivity: 0A Position: 35 (position.label in template: 35.A) Reactivity: 0A Position: 36 (position.label in template: 36.A) Reactivity: 1A Position: 37 (position.label in template: 37.A) Reactivity: 1A Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.A) Reactivity: 0.5A Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.C) Reactivity: 0.5C Position: 44 (position.label in template: 44.A) Reactivity: 0.5A Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.C) Reactivity: 0C Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.A) Reactivity: 0.5A Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.A) Reactivity: 0.5A Position: 57 (position.label in template: 57.A) Reactivity: 1A Position: 58 (position.label in template: 58.A) Reactivity: 0A Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.A) Reactivity: 1A Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.A) Reactivity: 0A Position: 66 (position.label in template: 66.A) Reactivity: 0A Position: 67 (position.label in template: 67.C) Reactivity: 0C Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.A) Reactivity: 0A Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.C) Reactivity: 0C Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.A) Reactivity: 0A Position: 81 (position.label in template: 81.U) Reactivity: nanU Position: 82 (position.label in template: 82.C) Reactivity: 1C Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.C) Reactivity: 0.5C Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.A) Reactivity: 0A Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.A) Reactivity: 0.5A Position: 93 (position.label in template: 93.A) Reactivity: nanA Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.C) Reactivity: nanC Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.A) Reactivity: nanA Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.A) Reactivity: nanA Position: 108 (position.label in template: 108.C) Reactivity: nanC Position: 109 (position.label in template: 109.A) Reactivity: nanA Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.C) Reactivity: nanC Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.A) Reactivity: nanA Position: 115 (position.label in template: 115.A) Reactivity: nanA Position: 116 (position.label in template: 116.C) Reactivity: nanC Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.C) Reactivity: nanC Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.3')3' 10 20 30 50 100


ispZ-ispU-cdsA-bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE-accA-rseP



Position: 2786-2865, Conformation: #1







Retained alignments:


   NC_003910.7       AA.UUU..GAC.-A.......................A.G...UU.U...AaCAUU....UA.GU.A..UGAUAG.GG...AAACUUAUUA...........................CU..GGCGA..UG...U.AUCGGU-A.AAAAACCU.AAGCGG.uCCUA.UCG...GU.......................AUUG.CUCA.AGGU..GCAG.GU..AAU..A.......GUGC
   NC_004603.1       CA.AGU..GAU.UG.......................G.U...UU.G...A.CCGU....CA.GC.A..UGUUGA.AA...AAACUGAUUG...........................UU..GGUGA..UG...U.CGGUCUUA.ACAAUCUG.AGCGGC..CCAA.UUU...CG.......................AUUG.CAAA.AGGU..GCGG.GU..GCG..A.......CGGC
   NC_004757.1       GA.GAU..GUC.UU.......................A.C...UU.U...A.CUUU....GC.GU.A..UGCUCG.GA...AAAAUGGUUA...........................CG..GGCGA..UG...U.UUCGCUGA.AAAAUAUC.AGUGGG..CCGA.UUA...CU.......................AUCG.CGAA.CUAU..GCCG.GC..CAG..U.......CGGC
   NC_005126.1       CA.ACU..GAU.GC.......................G.A...UU.A...A.CUGU....CA.GU.A..UGAUUG.GU...AAGCUGAUCG...........................UU..GGUGA..UG...U.GAAAAUUA.ACAACCUG.AGUGGA..CCUA.UCU...CU.......................AUCG.CUAA.AGGG..GCAG.GG..GUG..U.......CGGC
   NC_006300.1       CA.ACU..UUC.CU.......................G.G...UU.G...A.CGAU....UA.AA.G..UUAUCG.GU...AAAUUAUUUU...........................CA..GGCGA..UU...U.AUCUUUAA.AUAAUUUA.AGCGGA..CCAA.UUU...CC.......................AUUG.CUAA.GGGG..GCGG.GU..AUG..U.......CUUC
   NC_007712.1       CA.GCU..GAU.GC.......................G.G...CU.U...A.CGGU....CA.GU.A..UGUUAG.GU...AAAUUGAUAA...........................CC..GGGGA..UG...U.UAAGCUGA.ACAAUCUU.AGCGGG..CCGA.UUU...CC.......................AUCG.CCCA.GGGC..GCAG.GG..AUG..U.......CAGC
   NC_008344.1       GA.AAU..GUC.UU.......................A.U...UU.U...A.CCGU....GC.GC.A..UGCUUG.GG...AAAAUGGUCA...........................CU..GGUGA..UG...U.UUCUCUGA.AGAAUAUC.AGCGGG..CCGA.UUA...CC.......................AUUG.CAAA.CUAU..GCCG.GC..CAG..U.......CGGC
   NC_008825.1       --.GGC..ACU.GA.......................G.C...CU.G...-.---C....--.GC.A..UGCUGG.GC...AAGAUGCUGA...........................UC..GGCGA..GG...C.CUCGCUGA.AGAAUCUG.AGCGGG..CCGC.UGA...CG.......................AUCG.CCGA.CUAC..GCCG.GC..CAG..U.......CGGC
   NC_009792.1       CA.GUU..GAU.GA.......................A.G...CU.G...A.CGGU....CA.GU.A..UGCUGG.GA...AAAUUGAUAA...........................CC..GGUGA..UG...U.GAAACUGA.ACAACCUC.AGUGGG..CCGA.UUU...CU.......................AUCG.CUCA.GGGG..GCUG.GG..AUG..U.......CAGC
   NC_010554.1       CA.GUU..AAU.GG.......................G.U...UU.G...A.CUGU....CA.AA.A..UGAUUG.GC...AAGUUAGUGG...........................UU..GGUGA..UG...U.CAAGUUAA.CAAAUCUU.AGUGGA..CCGG.UUU...CU.......................AUCG.CUAA.AGGC..GCUG.GA..AUG..U.......CUGC
   NC_010645.1       CG.GCC..GAA.GU.......................G.G...UG.G...C.GC--....--.GU.A..CGGCUG.UC...CCGGUAUUCA...........................UG..GCCGA..UG...U.AAAGGGCG.ACUUUUCC.AGGGGG..CCGGgUCA...CC.......................GUCG.CUCA.GGAG..GCAG.GA..ACG..C.......CUGU
   NC_010694.1       CA.ACU..GAU.GA.......................A.G...CU.G...A.CGGU....AA.GU.A..UGUUGG.GU...AAACUGAUUG...........................UC..GGCGA..UG...U.UAAGCUGA.ACAAUCUC.AGCGGG..CCGA.UUU...CG.......................AUCG.CGCA.GGGU..GCUG.GG..AUG..U.......CAGC
   NC_011312.1       AA.UAU..UAU.AG.......................A.U...UU.A...A.CAUU....AA.CC.A..UGACUA.AG...AAGUUAUUCA...........................CG..GGUGA..UG...U.CGCUUUAA.ACAACCUA.AGUGGU..CCUA.UUU...CU.......................AUAG.-CAA.AAGG.aGCAG.GG..GCC..A.......CCGC
   NC_012880.1       CA.GUU..GGU.GA.......................A.G...UU.G...A.CGGU....CA.GU.A..UGAUAG.GC...AAGCUGAUAG...........................UU..GGUGA..CG...U.AAAACUGA.AUAACCUG.AGCGGA..CCAA.UCU...CA.......................AUUG.-CAC.AGGG.uGCAG.GA..AUG..U.......CAGC
   NC_012912.1       CU.GUU..GAU.GA.......................A.G...CU.G...A.CAGU....CA.GU.A..UGCUGG.GU...AAGUUGAUUA...........................CC..GGCGA..CG...U.GAAACUGA.AUAACCUG.AGCGGC..CCGA.UUU...CC.......................AUCGcGC-A.GGGA..GCAG.GC..AUG..U.......CAGC
   NC_012962.1       CA.ACU..GAU.GC.......................G.G...UU.A...A.CUGU....CA.GU.A..UGAUUG.GC...AAGCUGAUCG...........................UU..GGUGA..UG...U.GAAAAUCA.AUAACCUG.AGUGGG..CCUA.UCU...CU.......................AUCG.CCAA.AGGG..GCGG.GG..GUG..U.......CGGC
   NC_013166.1       UG.GUU..GAA.AG.......................A.A...UC.G...G.----....UA.GC.U..UCCUCG.GG...AAAUUGAUUA...........................CA..GGGAA..GU...U.AU-CAAUU.AAAAACUU.GGGCGG.aCCGG.UUG...GA.......................AUUG.CCCA.AGGU..GCGG.GG..CAG..A.......CUGC
   NC_013456.1       CA.AGU..CAU.UG.......................G.C...UU.G...A.CAAU....CA.GC.A..UGCUUA.AG...AAACUGAUUG...........................UU..GGUGA..CG...U.UGGUCUGA.AUAAUCUG.AGUGGU..CCAA.UAU...CA.......................AUAG.CCAA.AGGC..GCAG.GU..GCG..A.......CGGC
   NC_013592.1       CU.GUU..GAU.GA.......................A.A...CU.G...A.CAGU....CA.GU.A..UGCUGG.GU...AAGUUGAUUA...........................CC..GGCGA..CG...U.GAAGCUGA.AUAACCUG.AGCGGU..CCGA.UUU...CU.......................AUCG.-CAC.AGGG.aGCAG.GC..AUG..U.......CAGC
   NC_013961.1       CA.ACU..GAU.GA.......................A.G...CU.U...A.CGGU....GA.AU.A..UGUUAG.GC...AAACUGAUUG...........................UC..GGUGA..UG...U.GAAGCUGA.ACAAUCUC.AGCGGG..CCGA.UUU...CA.......................AUCG.CGCA.GGGG..GCUG.GG..AUA..U.......CAGC
   NC_014306.1       CA.GCU..GAU.GA.......................A.A...CU.G...A.CGGU....CA.AU.A..UGCUGG.GC...AAACUGAUUG...........................UC..GGCGA..AG...U.GAAGUUGA.ACAAUCUC.AGCGGG..CCGA.UUU...CU.......................AUCG.CCCA.GGGU..GCUG.GG..AUG..U.......CGGC
   NC_014500.1       CU.GCU..GAU.GA.......................A.G...CU.G...A.CGGU....CA.GU.A..UGCUGG.GU...AAGCUGAUUA...........................CC..GGUGA..CG...U.GAAGCUGA.AUAAUCUG.AGCGGC..CCGA.UUU...CC.......................AUCGcGC-A.GGGA..GCAG.GU..AUG..U.......CAGC
   NC_014541.1       GA.GCU..GAC.GG.......................C.G...CU.U...A.CCCU....GA.AG.A..UGAUUG.GC...AACCUGUUUA...........................CC..GGCGA..AG...U.GUCGGUGA.AGAGCCUC.AGCGGC..CCCA.UUU...CC.......................AUCG.CUCA.GGGA..GCGG.GU..GCC..A.......CAGC
   NC_015567.1       CA.GCU..UAU.GC.......................G.G...CU.U...A.CGGU....CA.AC.A..UGCUGG.GU...AAAUUAAUAA...........................CC..GGUGA..UG...U.AAAGCUGA.AUAACCUG.AGUGGC..CCGA.UUU...CG.......................AUUG.-CAC.AGGG.aGCAG.GG..GCA..U.......CAGC
   NC_015968.1       CA.ACU..GAU.GA.......................A.G...CU.A...A.CGGU....CA.AC.A..UGUUGG.GG...AAAUUGAUAA...........................CC..GGUGA..UG...U.GAAACUGA.ACAACCUC.AGUGGG..CCAA.UCU...CU.......................AUUG.CCCA.GGGG..GCUG.GG..AUG..U.......CAGC
   NC_017554.1       CA.GUU..AAU.GA.......................A.G...CU.G...A.CCGU....CU.CU.A..UGUUGG.GC...AAGUUAAUAA...........................CC..GGCGA..UG...U.GAAGCUGA.ACAACCUG.AGCGGC..CCGA.UUU...CG.......................AUUGcGCAA.-GGU..GCAG.GU..UUG..U.......CAGC
   NC_017910.1       CA.GCU..GAU.GA.......................A.G...CU.G...A.CGGU....GA.GU.A..UGCUGG.GG...AAAUUAAUAA...........................CC..GGUGA..CG...U.CAAACUGA.AUAACCUC.AGUGGG..CCUA.UUU...CG.......................AUAG.CCCA.GGGG..GCAG.GU..AUG..U.......CGGC
   NC_018419.1       CA.GCU..GAU.GC.......................GcG...UU.A...C.GGUC....AA.-U.A..UGUUAG.GU...AAAGUAGUUA...........................CC..GGAGA..UG...U.UAAGAUCA.AUAAUCUG.AGUGGC..CCGA.UUG...GU.......................AUAG.CAAA.GGGC..GCGG.GG..AUG..G.......CAGU
   NC_021870.1       CA.GUU..GAU.GA.......................A.G...UU.G...A.CGGU....CA.GU.A..UGCUGG.GU...AAAUUGAUAA...........................CC..GGUGA..UG...U.GAAACUGA.ACAACCUC.AGUGGG..CCGA.UUU...CU.......................AUCG.CUCA.GGGG..GCUG.GG..AUG..U.......CAGC
   NZ_AP014568.1     GA.GGU..CUC.GC.......................A.C...CU.G...U.CGCU....GC.AA.A..UGAUCG.GC...AAGAUGCUGA...........................CG..GGCCA..GG...C.CUCGCUGC.AAAACCUG.AGCGGC..CCGA.UCA...CC.......................AUCG.CCGA.CUAC..GCCG.GC..CAG..U.......CGGC
   NZ_AP014569.1     GA.GGU..UUC.GC.......................A.C...CU.G...A.CGCU....GC.AA.A..UGAUCG.GC...AAGAUGCUCA..........................gCG..GUCA-..GG...C.CUCGUUGC.AAAAUCUG.AGCGGC..CCGA.UCA...CC.......................AUCG.CCGA.CUAC..GCCG.GC..CAG..U.......CGGC
   NZ_AP014635.1     CA.AAU..CAU.UG.......................G.U...UU.A...A.CCGU....UA.GU.A..UGCUAA.AA...AAAUUGGUGG...........................UA..GGUGA..UG...U.GGGGUUGA.AUAACCUU.AGUGGA..CCUA.UCU...CG.......................AUUG.CGAA.AGGU..GCGG.GA..GCU..A.......CCGC
   NZ_AP018689.1     CA.AAU..CAU.UG.......................A.U...UU.A...A.CUCU....UA.CA.A..UGGUCA.AA...AAACUAUUCA...........................CU..GGCGA..UG...U.GGGUAUUA.AAAAUUUA.AGUGGG..CCAA.UUA...CC.......................AUUG.CAAA.AGGG..GCGG.GU..ACA..A.......CGGC
   NZ_AP019007.1     CA.ACU..GAU.GA.......................A.G...CU.A...A.CGGU....CA.AC.A..UGUUGG.GG...AAAUUGAUAA...........................CC..GGUGA..UG...U.GAAACUGA.ACAACCUC.AGUGGG..CCUA.UCU...CG.......................AUUG.CUCA.GGGG..GCUG.GG..AUG..U.......CAGC
   NZ_AP019651.1     CA.AGU..GAU.UG.......................G.U...CU.U...A.CCAU....GA.CU.A..UGCUGA.AA...AAAUUGGUGG...........................UU..GGUGA..UG...U.UGGCUUAG.AAAAUUUG.AGUGGA..CCGA.UUU...CA.......................AUCG.CCAA.AGGC..GCGG.GU..ACA..A.......CCGC
   NZ_AP019657.1     CA.GGU..UAU.UG.......................A.U...UU.G...A.CAGU....CA.CC.A..UGUUGA.AA...AAACUGGUGG...........................UA..GGCGA..CG...U.UGGCCUAA.AUAACCUC.AGCGGA..CCGA.UUA...CG.......................AUCG.CAAA.AGGG..GCAG.GA..ACG..A.......CGGC
   NZ_AP019755.1     GA.AAU..GUC.UU.......................A.U...UU.U...A.CGCU....GC.GC.A..UGUUGG.GG...AAGAUGGUCA...........................CG..GGAGA..UG...U.AUCACUCA.AAAAUAUU.AGUGGG..CCGA.UUA...CC.......................AUUG.CUAA.UUAU..GCUG.GU..CAG..A.......CAGC
   NZ_AP021869.1     CA.GAU..AAU.GG.......................A.U...CU.G...A.CUUU....CA.CU.A..UGGUAA.AA...AAAUUAUUUA...........................CU..GGCGA..UG...U.UGGUAUUA.AUAA--UU.UGAGCGgcCCAA.UUA...CC.......................AUUG.CGAA.AGGU..GCUG.GG..AUG..A.......CCGC
   NZ_AP022508.1     CA.ACU..GAU.GA.......................A.G...CU.G...A.CGGU....CA.AC.A..UGUUGG.GG...AAAUUGAUAA...........................CC..GGUGA..UG...U.GAAACUGA.ACAACCUC.AGUGGG..CCAA.UCU...CG.......................AUUG.CUCA.GGGG..GCUG.GG..AUG..U.......CAGC
   NZ_AP022547.1     CA.GCU..GAU.GU.......................C.G...UU.A...A.CGGU....CC.GA.A..UGCUGG.GC...AAAUUGAUAA...........................CC..GGUGA..UG...U.CAAACUGA.ACAACCUC.AGCGGG..CCGA.UUU...CU.......................AUCG.CCCA.GGGG..GCUG.GG..AUG..U.......CAGC
   NZ_AP022600.1     GG.UGU.aGCG.GA.......................A.C...AC.C...U.CGCU....CG.GU.U..CGUACG.AA...A---------.......................c...CG..GGUUU..AG...C.ACAAGCGA.AUA-CGUC.ACUGCG..CCGG.CACcuaCU.......................GCCG.CGAA.GGCG..GCCG.GG..UUG..A.......CGCC
   NZ_AP022609.1     CGcGCU..GGU.GU.......................A.G...CC.G...A.CG--....AU.GG.C..CCCCAG.GU...----------uggcug............aguucg...CC..GGGAU..CG...A.CAACGCGA.ACACCGCC.AGCAGG..AUGG.UCG...GU.......................UCCA.CCAG.GGCG..GCGA.UG..GUG..A.......UCUC
   NZ_AP022642.1     CC.GCU..GCG.GA.......................A.G...CG.G...C.UGAC....CA.--.-..CGCCGG.GC...AACUGGUUCU...........................CC..GGCAG..GG...U.GAAGGUGA.C---GCUG.AUGGGG..CGGU.UCU...--gg..................gugAUCA.CCAC.CAGC..GGCG.UG..GUG..U.......CGCC
   NZ_AP023032.1     CA.UUU..AAG.CA.......................A.A...UU.G...A.CCGU....AU.CU.A..UGAUCG.GU...AAAUUGGUGA...........................CA..GGCGU..GG...U.UUCAUUAG.AUAACCUU.AGCGGU..CCAA.UAU...CU.......................AUCG.CUAA.AGGU..GCUG.GA..GCU..A.......CCGC
   NZ_AP023033.1     CA.UUU..AAG.CA.......................A.A...UU.G...A.CCGU....AU.CU.A..UGAUCG.GU...AAAUUGGUGA...........................CA..GGCGU..GG...U.UUCAUUAG.AUAACCUU.AGCGGU..CCAA.UAU...CU.......................AUCG.CUAA.AGGU..GCUG.GA..GCU..A.......CUGC
   NZ_AP023184.1     CA.ACU..CAU.GA.......................A.G...CU.U...A.CGGU....CA.AU.A..UGCUGG.GG...AAAUUAAUAA...........................CC..GGUGA..CA...U.CAAGCUAA.AUAACCUC.AGUGGG..CCAA.UCU...CC.......................AUAG.CUCA.AGGU..GCAG.GU..AUG..U.......CGGC
   NZ_AP024165.1     CA.AGU..UAU.UG.......................G.G...CU.G...A.CAAU....UA.GC.A..UGUUGA.AA...AAGCUAAUUG...........................UU..GGUGA..CG...U.UGGUUUGA.ACAAUUUG.AGCGGA..CCAA.UUU...CA.......................AUUG.CGAA.AGGC..GCAG.GA..GCA..A.......CCGC
   NZ_AP024852.1     UA.GUC..---.-A.......................C.A...CU.A...A.CAUU....UG.AU.A..UGGUCA.CU...AAGCUUGUAA...........................CG..GGCGA..UG...U.GGCGGUGA.AAAACCUA.AGUGGC..CCUA.UUU...CA.......................AUAG.-CAA.AGGG.uGCUG.GA..AUG..A.......CGGC
   NZ_AP024861.1     CA.GGU..CAU.AG.......................G.A...CU.G...A.CGGU....GA.CG.A..UGCUGA.AA...AAACUCAUCG...........................UA..GGUGA..UG...U.AGGCCUGA.ACAAUCUU.AGUGGG..CCGA.UAU...CU.......................AUCG.CAAA.AGGU..GCAG.GC..ACG..A.......CUGC
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   NZ_LS483422.1     CA.GUU..GAU.GA.......................A.G...CU.A...A.CGGU....CA.AC.A..UGAUGG.GC...AAACUAGUUG...........................UU..GGGGA..UG...U.UAAACUCA.AUAA-CUU.-GAGCGguCCGA.UAU...CU.......................AUCG.CGAA.AGGU..GCGG.GG..GUA..U.......CAGC
   NZ_LS483429.1     C-.---..---.--agcuuu.......cccuuuu...-.-...--.A...A.CCUU....GA.AA.A..UAUUAG.GG...AAAUUACUUA...........................CU..GGCGA..UU...U.GUCAUUAA.AUAAUUUA.AGUGGG..CCAA.UUU...CU.......................AUUG.CAAA.AGGU..GCUG.GC..GCA..U.......CAGC
   NZ_LS483470.1     CA.GUU..GAC.GA.......................C.G...CU.U...A.CUGC....CA.AA.A..UGAUAG.CA...AAACUGAUAA...........................CG..GGCGA..CG...U.GAAGUUGA.AAAAUCUG.AGCGGC..CCAA.UAU...CA.......................AUUG.CUCA.GGGA..GCCG.GA..ACG..G.......CCGC
   NZ_LT615367.1     CA.ACU..GAU.GA.......................A.G...CU.G...A.CCGU....CA.GC.A..UGCUGG.GU...AAGCUUAUCA...........................CC..GGAGA..CG...U.GAAACUGA.ACAACCUG.AGCGGA..CCGA.UUU...CG.......................AUUG.CGCA.GGGA..GCAG.GC..AUG..U.......CAGC
   NZ_LT897836.1     CA.GUU..AAU.GA.......................A.G...AU.U...A.CGGG....CA.AU.A..UGUUAA.GC...AAAUUGAUAA...........................CC..GGAAA..UA...U.UAAGCUAA.AAAAUUUA.AGCGGU..CCUA.UUU...CU.......................AUAGcACAA.-GGG..GCAG.GG..AUG..A.......CAGC
   NZ_LT906448.1     CA.ACU..UUC.UU.......................G.G...UU.G...A.CAAU....UA.AA.G..UCAUUG.GU...AAAUUGCUUA...........................CU..GGUCA..UU...U.AUCUUUGG.AUAAUUUA.GGCGGU..CCAA.UUU...CU.......................AUCG.CAAA.AGGC..GCAG.GA..AUG..A.......CCUC
   NZ_LT906479.1     CA.GCU..GAU.GC.......................G.G...CU.G...A.CGGU....CA.GC.A..UGCUGG.GU...AAAUUAAUAA...........................CC..GGUGA..UG...U.AAAGCUGA.ACAACCUG.AGUGGC..CCGA.UUU...CG.......................AUUG.-CAC.AGGG.aGCAG.GG..GCG..U.......CAGC
   NZ_OU594967.1     CA.GAC..AAC.GC.......................G.A...AU.U...A.CGAU....UG.AU.A..UGCUUG.UC...AAGCUGGUAA...........................CA..GGAAA..AG...U.AUCUGUAC.AGAAUUUA.AGUGGU..CCAA.UUU...CG.......................AUUG.CCCG.CGGG..GCUG.GA..CAG..U.......CAGC


   Structure         ((.(((...............................).)...)).).....((((....((.......((((((...........................................))..))))........).)..))))......((((.....((...(((.(..............................)))).))...))))..((((..................))))


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ispZ-ispU-cdsA-bamA-skp-lpxD-fabZ-lpxA-lpxB-rnhB-dnaE-accA-rseP



Position: 2786-2865, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y A R U R Y R Y U R A C U R R A U G U R R A A R Y U R U R Y G G Y G A Y G U U R A A A A Y Y U A G Y G G C C A U U C A U Y G C A R G G G C G G R Y C G C 5'