hupB



Position: 308-443, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.C) Reactivity: 0C Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.C) Reactivity: 0C Position: 41 (position.label in template: 41.A) Reactivity: 1A Position: 42 (position.label in template: 42.A) Reactivity: 0A Position: 43 (position.label in template: 43.C) Reactivity: 0C Position: 44 (position.label in template: 44.C) Reactivity: 0.5C Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.A) Reactivity: 0A Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.A) Reactivity: 1A Position: 51 (position.label in template: 51.C) Reactivity: 1C Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.A) Reactivity: 0.5A Position: 57 (position.label in template: 57.A) Reactivity: 0A Position: 58 (position.label in template: 58.A) Reactivity: 0A Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.A) Reactivity: 1A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.A) Reactivity: 0A Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.C) Reactivity: 0.5C Position: 65 (position.label in template: 65.A) Reactivity: 0.5A Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.C) Reactivity: 0C Position: 68 (position.label in template: 68.A) Reactivity: 0.5A Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.C) Reactivity: 1C Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.C) Reactivity: 1C Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.A) Reactivity: 0.5A Position: 81 (position.label in template: 81.A) Reactivity: 1A Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.A) Reactivity: 0A Position: 86 (position.label in template: 86.C) Reactivity: 0C Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.A) Reactivity: 1A Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.C) Reactivity: 0.5C Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.A) Reactivity: 1A Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.A) Reactivity: 1A Position: 106 (position.label in template: 106.A) Reactivity: 1A Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.C) Reactivity: 0C Position: 109 (position.label in template: 109.A) Reactivity: 0A Position: 110 (position.label in template: 110.C) Reactivity: 0.5C Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.A) Reactivity: 0A Position: 114 (position.label in template: 114.A) Reactivity: 0A Position: 115 (position.label in template: 115.A) Reactivity: 0.5A Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.C) Reactivity: 0C Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.U) Reactivity: nanU Position: 124 (position.label in template: 124.A) Reactivity: 1A Position: 125 (position.label in template: 125.A) Reactivity: 1A Position: 126 (position.label in template: 126.A) Reactivity: 0.5A Position: 127 (position.label in template: 127.C) Reactivity: 0.5C Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.A) Reactivity: 1A Position: 130 (position.label in template: 130.A) Reactivity: 1A Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.C) Reactivity: 0C Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.C) Reactivity: 0C Position: 139 (position.label in template: 139.C) Reactivity: 0C Position: 140 (position.label in template: 140.C) Reactivity: 0C Position: 141 (position.label in template: 141.C) Reactivity: 0C Position: 142 (position.label in template: 142.A) Reactivity: 1A Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.C) Reactivity: nanC Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.A) Reactivity: nanA Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.C) Reactivity: nanC Position: 163 (position.label in template: 163.A) Reactivity: nanA Position: 164 (position.label in template: 164.A) Reactivity: nanA Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.G) Reactivity: nanG Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.G) Reactivity: nanG Position: 170 (position.label in template: 170.C) Reactivity: nanC Position: 171 (position.label in template: 171.A) Reactivity: nanA Position: 172 (position.label in template: 172.U) Reactivity: nanU Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.U) Reactivity: nanU Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.C) Reactivity: nanC Position: 177 (position.label in template: 177.3')3' 10 20 30 50 100 150


hupB



Position: 308-443, Conformation: #0







Retained alignments:


   NC_003869.1       CU.UUU.G.AAGUUA.......................G..G..G.A.G...AGGGC..AGAGA..GGA.A..G..G..G..CAGAAAUCC.........UCAGA.CAAGAGAGGAAAUAACAA.U.C.CC...UGC.A................................................UC.AAA.A.G.C.U.C.C.U..A.UC.UUC..AA.GGC.U.....GGA..AAG....................................GCUU.UAAAGGAUU...U.G.G.UGA-.........---...-........-...-.....-....-..-...AU.UCUU..A.A.A.................................................................A.AG.AA.A..A.U....-..-.-......-.C.A.G...G.U...C.G.G.....U..U.U.C......G.A.CC
   NC_003910.7       CU.UUC.U.CUGUAC.......................G..U..G.A.C...CGUGC..UGCUC..GUA.C..U..G..G..UCGUAACCC.........ACAAA.CGGGUGCUACUAUCCAAA.U.C.GC...UGC.U................................................GC.AAA.A.A.U.U.C.C.A..U.CU.UUC..AA.AGC.U.....GGU..AAA....................................GCAU.UAAAAGACG...C.A.U.GUAA.........CUA...G........-...-.....-....-..-...GC.UCCA..A.U.U.................................................................U.GG.GC.U..-.-....-..-.-......-.A.A.G...U.U...A.U.A.....C..C.G.C......G.U.AU
   NC_004347.2       CU.UUU.G.AAGUGC.......................G..U..G.A.G...CGUGC..UGAGC..GUA.C..U..G..G..UCGCAACCC.........ACAAA.CGGGUGAAGAAAUCAAAA.U.C.GC...AGC.A................................................GC.AAA.A.A.U.U.C.C.A..G.CA.UUC..AA.AGC.U.....GGU..AAA....................................GCUC.UGAAAGACG...C.U.G.UCAA.........UUA...A........U...U.....U....U..U...--.----..-.-.-gauaucguagccuu...................................uguaaggcguucgu..-.--.--.-..-.-....A..A.U......G.A.U.A...-.-...-.-.-.....-..-.-.-......-.-.--
   NC_004757.1       CU.UUC.A.AGGUUG.......................G..A..A.A.A...CGGGC..AGCAC..GUA.C..A..G..G..ACGUAACCC.........GCGUA.CCGGUGCAGAGAUAAAAA.U.C.AA...GGC.A................................................GC.CAA.G.G.U.A.C.C.U..A.AA.UUC..AC.UGC.U.....GGC..AAA....................................GCGC.UGAAAGAUG...C.U.G.UAAA.........CUA...G........-...-.....-....-..-...--.----..-.-.-cgcuccuucgaugacagggauc..................agcgagacgggugcuuagcucag..-.--.--.-..-.-....-..-.-......-.C.U.G...G.U...A.G.A.....G..C.GuC......G.C.CC
   NC_005966.1       CU.UUC.A.GCGUAA.......................A..A..G.A.U...CGUGC..UGCAC..GUA.C..U..G..G..CCGUAACCC.........UAAAA.CUGGCGAAGAGCUUCAAA.U.U.AA...AGC.A................................................AC.UAA.A.G.U.A.C.C.A..A.GC.UUU..AA.AGC.U.....GGU..AAA....................................GGUU.UGAAAGAUU...C.A.G.UUGC.........UUA...A........U...C.....U....U..U...--.----..-.-.-u.............................................................a..-.--.--.-..-.-....A..A.A......U.A.A.G...U.A...G.A.C.....G..C.G.C......-.C.AU
   NC_006177.1       CG.UUC.G.AGGUCC.......................G..G..A.A.C...CGGGC..UGCCC..GUU.C..G..G..G..GCGCAAUCC.........GCAGA.CCGGCGAGCCGAUCAAGA.U.C.CC...UGC.G................................................GG.CAA.G.G.U.G.C.C.U..G.CC.UUC..CG.UCC.G.....GGC..AAG....................................GAGC.UGAAGGAGA...G.C.G.UAUA.........---...-........-...-.....-....-..-...--.----..-.-.-agucaagacg..........................................guaagggccgg..-.--.--.-..-.-....-..-.-......-.A.C.C...C.U...G.A.A.....G..G.G.G......G.U.CC
   NC_006512.1       CG.UUU.A.GCGUGC.......................G..U..G.A.G...CGUUC..UGCUC..GUA.C..U..G..G..UCGUAACCC.........UCAAA.CGGGUGAGACUAUUCAGA.U.C.GC...UGC.U................................................GC.UAA.A.G.U.U.C.C.U..U.CU.UUU..AA.AGC.A.....GGU..AAA....................................GCAC.UGAAAGACG...C.A.G.UAAA.........UUA...A........U...-.....-....-..-...--.----..-.-.-u.............................................................a..-.--.--.-..-.-....-..-.-......-.A.A.G...C.G...C.A.U.....U..A.G.C......G.C.UU
   NC_007482.1       CU.UUU.U.CAGUUA.......................A..A..G.A.A...CGUGC..AGCAC..GUA.C..U..G..G..CCGUAACCC.........ACAAA.CGGGUGCUGAGAUCCAAA.U.C.GC...AGC.G................................................GC.AAC.U.A.U.C.C.C.A..A.GC.UUU..AA.AGC.A.....GGU..AAA....................................GGUC.UUAAAGAUC...A.A.G.UAAA.........CCU...U........U...A.....A....U..U...GU.AG--..-.G.U.................................................................-.-U.UA.U..C.U....A..A.U......U.A.A.A...U.G...AaA.A.....G..A.G.G......G.C.CU
   NC_007530.2       CU.UUU.G.AAGUGC.......................G..U..G.A.A...AGAUC..UGCUC..GUA.C..A..G..G..ACGUAAUCC.........ACAAA.CUGGCGAAGAAAUUCAAA.U.C.GC...UGC.U................................................GG.UAA.A.G.U.U.C.C.U..G.CA.UUU..AA.AGC.A.....GGU..AAA....................................GAGU.UAAAAGAAG...C.U.G.UGAA.........AUA...A........A...C.....A....A..G...AA.ACCA..-.-.-gccauuu.................................................uauaggc..U.GG.UU.U..-.-....C..U.U......G.U.U.U...U.A...U.U.U.....A..A.G.U......A.A.UU
   NC_007908.1       CC.UUU.G.CCGUUG.......................G..C..A.A.A...CGUGC..UGCGC..GUG.U..G..G..G..GCGUAACCC.........ACGUA.CUGGCGACGCAAUCAAAA.U.C.AA...AGC.G................................................GC.GAA.A.G.U.G.C.C.A..A.AA.UUC..CG.UCC.A.....GGU..AAA....................................GCGU.UGAAAGAUG...C.C.C.UGAA.........CUG...A........U...C.....-....-..-...--.----..-.-.-gccgguuuaaguc....................................gggugcuuagcuca..-.--.--.-..-.-....-..-.-......G.U.U.G...G.U...A.G.A.....G..C.G.U......C.U.GC
   NC_007912.1       CU.UUC.C.UAGUUA.......................A..A..G.A.G...CGUGC..UGCUC..GUA.C..U..G..G..UCGCAACCC.........ACAAA.CUGGUGCACCAAUCGAAA.U.C.GC...CGC.U................................................GC.UAA.A.A.U.A.C.C.U..A.GC.UUU..AA.GCC.A.....GGU..AAA....................................GCGU.UAAAAGACG...C.C.G.UAAA.........CUA...A........-...-.....-....-..-...--.----..-.-.-uauccacacuacccagcuu.........................cuaacaaaaauaauaaagc..-.--.--.-..-.-....-..-.-......-.-.-.-...-.-...-.-.-.....-..-.-.-......G.A.AU
   NC_007954.1       --.---.-.--GUAC.......................G..U..C.A.A...CGUGC..UGAGC..GUA.C..U..G..G..CCGUAACCC.........ACAAA.CGGGUAAAGAAAUCAAAA.U.U.GC...UGC.G................................................GC.AAA.U.A.U.U.C.C.A..G.CA.UUU..AA.AGC.U.....GGC..AAG....................................UCUU.UAAAAGACG...C.A.G.UUAA.........UUA...A........U...U.....A....U..-...--.----..-.-.-uaauauug...............................................cggccuuu..-.--.--.-..-.-....-..G.U......A.A.G.G...C.A...U.C.C.....G..C.U.-......-.-.--
   NC_007963.1       CA.UUC.U.CUGUCA.......................A..A..G.A.G...CGUGC..CGCGC..GCA.C..U..G..G..CCGCAACCC.........GCAGA.CCGGGCAGACGAUCGAAA.U.CaGC...-GC.C................................................GC.CAA.G.G.U.G.C.C.G..A.CG.UUC..AA.GGC.C.....GGC..AAG....................................GCGC.UCAAGGAUU...C.G.G.UCAA.........CUA...A........G...-.....A....C..C...GG.UUCG..A.G.U.................................................................G.GG.GC.C..G.G....G..G.C......G.A.U.C...G.C...C.A.U.....G..A.G.C......G.U.GA
   NC_008048.1       CC.UUC.G.CGGUCA.......................G..C..A.A.G...CGCAA..-GGCA..UCGaC..C..G..G..UCGCAACCC.........GCGCA.CCGGCGAAACGAUGACCA.U.C.GC...GGC.G................................................UC.GAA.C.C.A.G.C.C.G..A.AG.UUC..AA.GGC.C.....GGC..AAG....................................GCCC.UCAAGGACG...C.C.G.UCAA.........CUA...A........G...G.....U....C..G...GC.GG--..-.-.-cccucuugcugaagaacaac......................ucgggccguggcgcaagcugc..-.-G.--.-..-.-....-..-.-......-.-.-.-...-.-...-.-.-.....-..G.C.C......C.G.UU
   NC_008260.1       CU.UUU.G.CUGUUA.......................A..G..C.G.U...CGUGA..AGCUC..GCG.A..U..G..G..UCGUAACCC.........GCAAA.CAGGUCAGACUAUCAAAA.U.A.GC...UGC.U................................................GC.CAA.C.G.U.G.C.C.G..G.GC.UUC..AA.AGC.G.....GGU..AAA....................................GCGC.UGAAAGAUG...C.G.G.UGAA.........CUA...A........A...C.....U....G..U...UU.GC--..-.-.-.................................................................-.--.-A.G..G.A....G..C.G......G.U.A.G...U.U...C.A.Gcuggu-..-.-.-......-.-.--
   NC_008789.1       CC.UUC.A.CCGUCC.......................G..C..G.A.G...CGGGC..CGCCC..GCA.C..C..G..G..UCGGAACCC.........GCGCA.CCGGCGAGAGCAUCGACA.U.C.CC...GGC.G................................................UC.AAA.A.G.U.A.C.C.G..G.GC.UUC..AA.GCC.U.....GGC..AAG....................................GCGC.UCAAGGAUG...C.G.A.UAAA.........CUA...A.......aG...A.....G....C..U...UA.UUCG..G.U.U.................................................................C.GG.GU.G..G.U...uA..G.C......U.C.A.G...U.U..gG.G.A.....G..A.G.Cg...ucG.C.CC
   NC_008825.1       CG.UUU.G.CCGUGA.......................C..C..A.A.G...CGUGC..AGCGC..GCA.G..U..G..G..GCGCAACCC.........GCGCA.CCGGCGAUACGAUCAAGA.U.C.AA...GGC.G................................................GC.CAA.G.G.U.G.C.C.G..A.AG.UUU..CG.UCC.G.....GGC..AAG....................................GCCC.UGAAGGACG...C.A.C.UCAA.........CUG...A........A...C.....-....-..-...--.----..-.-.-caagucaggcucg.....................................ggugcuuagcuca..-.--.--.-..-.-....-..-.-......G.C.U.G...G.U...A.G.A.....G..CgG.C......G.C.CC
   NC_009092.1       CU.UUU.G.AAGUGC.......................G..U..C.A.A...CGCGC..AGAGC..GUA.C..U..G..G..UCGCAACCC.........ACAGA.CUGGUAAAGAGAUCAAGA.U.U.GC...UGC.A................................................GC.AAAcA.U.U.C.C.A.G..C.AU.UCA..AG.-GC.C.....GGU..AAA....................................GCAC.UUAAAGACG...C.U.G.UAAA.........CUA...A........G...A.....C....A..C...--.----..-.-.-acuuaguua.............................................agguggccu..-.--.--.-..-.-....U..U.G......U.A.-.-...-.-...-.-.-.....-..-.-.-......-.-.--
   NC_009792.1       CU.UUU.G.CUGUUA.......................A..A..G.A.G...CGUGC..UGCCC..GUA.C..U..G..G..UCGCAACCC.........GCAAA.CAGGUAAAGAGAUCACCA.U.C.GC...CGC.C................................................GC.UAA.A.G.U.G.C.C.G..G.GU.UUC..CG.UGC.A.....GGU..AAA....................................GCGC.UGAAAGACG...C.G.G.UAAA.........CUA...A........G...A.....G....C..U...UC.UCCC..C.C.U.................................................................G.GG.GA.U..G.U....G..A.C......A.A.A.G...U.A...C.A.A.....G..G.G.C......G.C.AU
   NC_010002.1       CA.UUC.G.CCGUUG.......................G..U..A.A.G...CGCGC..UGCUC..GUA.C..G..G..G..CCGCAACCC.........CCGCA.CCGGCGAAACCAUCAAGA.U.C.AA...GGC.C................................................GC.CAA.G.G.U.U.C.C.A..A.AG.UUC..CG.UCC.G.....GGC..AAG....................................GCAU.UGAAAGAUGc.c-.-.C.UGAA.........C--...-........-...-.....-....-..-...--.----..-.-.-ugacaccagucaagg.................................uggggugcuuagcuc..-.--.--.-..-.-....-..-.-......-.A.G.U...U.G...G.U.A.....G..A.G.C.....gG.C.GC
   NC_010524.1       CG.UUC.G.CCGUGA.......................C..C..A.A.G...CGCGC..GGCAC..GCA.G..C..G..G..ACGCAAUCC.........GCGUA.CCGGCGCGGUGAUCAAGA.U.C.AA...GUC.G................................................UC.GAA.A.G.U.G.C.C.G..A.AG.UUC..CG.CCC.U.....GGC..AAG....................................GCCU.UGAAGGAUU...C.G.C.UCAA.........CUG...A........U...U.....U....C..A...CC.GUGC..C.C.G.................................................................G.CA.GG.G..C.A....U..G.G......C.C.A.G...G.A...C.A.C.....A..G.G.G......G.U.GC
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   NZ_CP107077.1     CU.UUU.G.CGGUUA.......................A..A..G.A.G...CGCGC..UGCCC..GUA.C..U..G..G..CCGCAACCC.........GCAAA.CCGGCAAAGAGAUUACUA.U.U.GC...UGC.U................................................GC.CAA.A.G.U.C.C.C.U..G.GC.UUC..CG.CGC.A.....GGU..AAA....................................GCGC.UGAAAGACG...C.C.G.UGAA.........CUA...A........G...G.....A....C..U...UU.CUCC..AuG.C.................................................................G.GG.GA.G.gG.U....G..G.C......A.A.C.A...U.A...C.A.A.....G..G.G.C......A.C.AU
   NZ_CP110224.1     CU.U-U.G.AAGUAC.......................G..U..G.A.G...CGUUC..AGCUC..GUA.A..A..G..G..UCGUAAUCC.........ACAAA.CUGGUGAAGAGAUCGAAA.U.U.CC...UGC.A................................................AG.CAA.A.G.U.U.C.C.U..G.CU.UUU..AA.ACC.A.....GGA..AAA....................................GCCC.UUAAAGAUA...C.C.G.UGAA.........AUA...A........-...-.....-....-..-...--.----..-.-.-uua.........................................................cau..-.--.--.-..-.-....-..-.-......-.A.G.G...G.C...A.A.A.....G..G.G.U......G.C.GU
   NZ_FO704551.1     UU.CAC.G.GUG--C.......................G..U..G.A.A...CGUGC..AGCAC..GUA.C..A..G..G..ACGCAACCC.........UCAGA.CUGGCAAGGAAAUCAAGA.U.C.GC...AGC.G................................................GC.AAA.A.G.U.A.C.C.G..G.CU.UUC..CG.UGC.U.....GGA..AAG....................................GGGU.UGAAAGACG...C.U.G.UUAA.........U--...-........-...-.....-....-..-...--.----..-.-.-gguuaauccauaaaaaaacaggccuu...........aguuuucguuauugggauaaacuuca..-.--.--.-..-.-....-..-.-......-.A.C.U...G.A...C.U.A.....G..G.G.C......G.U.AU
   NZ_HG916765.1     CC.UUC.G.CCGUGU.......................C..C..G.A.G...CGCGC..CGCGC..GCA.C..C..G..G..CCGCAAUCC.........GCGCA.CCGGCGAGGAAAUCAAGA.U.C.AA...GAA.G................................................GC.CCG.C.G.U.G.C.C.G..A.AG.UUC..CG.UCC.G.....GGC..AAG....................................GCCC.UGAAGGACG...C.C.G.UGAA.........C--...-........-...-.....-....-..-...--.----..-.-.-gc..........................................................caa..-.--.--.-..-.-....-..-.-......-.G.U.A...A.U...C.C.A.....G..C.G.C.....cG.C.AC
   NZ_HG916826.1     CC.UUC.G.CUGUCA.......................A..A..G.A.G...CGUGC..UGCUC..GCA.C..U..G..G..CCGCAACCC.........GCAGA.CUGGCAAGCCGAUCAACA.U.C.GC...UGC.U................................................GC.CAA.G.A.U.C.C.C.G..G.GC.UUC..AA.AGC.U.....GGC..AAG....................................GCUC.UGAAAGACG...C.U.G.UCAA.........CUA...A........G...C.....G....U..C...UU.CUG-..-.-.-aauuugucucgccgccagaccuu................ucuggcgguuguugggcggcaggg..-.CA.G-.-..-.-....-..-.-......-.-.-.-...-.-...-.-.-.....-..-.-.-......-.-.--
   NZ_LN999833.1     CA.UUU.A.CAGUAC.......................G..C..A.C.G...CGCUC..UGCCC..GGA.C..U..G..G..GCGUAAUCC.........ACAAA.CAGGUAAAGAAAUUACCA.U.U.UC...UGC.C................................................GU.UAA.G.G.U.U.C.C.G..G.GC.UUC..CG.UGC.U.....GGU..AAA....................................GGGC.UGAAAAACG...C.G.G.UGAA.........CUG...A........U...C.....G....U..U...UG.UCUG..A.U.G.................................................................U.AA.AC.A..G.G....A..G.A......G.-.-.-...C.A...U.A.A.....G..-.-.-......-.-.--
   NZ_LR134201.1     CC.UUU.G.CUGUUA.......................A..A..G.A.G...CGUGC..UGCCC..GUA.C..U..G..G..CCGUAACCC.........UCAAA.CCGGUAAAGAAAUCACCA.U.C.GC...CGC.A................................................GC.AAA.A.G.U.A.C.C.A..G.GC.UUC..CG.UGC.U.....GGU..AAA....................................GCGC.UGAAAGACG...C.U.G.UUAA.........CUG...A........U...U.....-....-..-...--.----..-.-.-uauuagccccggcugau.............................gggguguagggugucag..-.--.--.-..-.-....-..-.-......G.U.A.U...C.G...C.A.G.....G..G.G.C......G.C.AU
   NZ_LR134304.1     AC.UUU.G.AGGUAC.......................G..U..G.A.A...CGUGC..UGCAC..GUA.A..A..G..G..UCGUAAUCC.........UCAAA.CUGGUAAAGAAAUUGAUA.U.C.CC...AGC.A................................................AG.UAA.A.G.U.U.C.C.A..G.CA.UUC..AA.AGC.U.....GGU..AAA....................................GCAU.UAAAAGAUG...C.U.G.UAAA.........AUA...AuuuuacuuA...G.....A....A..A...GC.CCUG..A.A.U.................................................................A.AG.GG.C..U.U....U..U.U......-.-.A.U...U.-...-.-.-.....-..-.-.-......-.-.--
   NZ_LR134338.1     AC.UUC.G.AAGUUC.......................G..U..G.A.A...CGUGC..GGCUC..GUA.A..A..G..G..CCGUAACCC.........ACAAA.CUGGUGAAGAGAUCGAAA.U.C.GC...UUCcA................................................GC.A-A.A.G.U.-.-.-.-..-.AC.CUG..CG.UUU.AaaccaGGU..AAA....................................CAAC.UCAAAGACU...C.C.A.UCAA.........GU-...-........-...A.....G....U..U...GU.UUCU..U.U.U.................................................................G.AG.AA.C..G.A....A..G.C......-.A.C.U...U.A...C.A.-.....-..-.-.-......-.-.--
   NZ_LR134343.1     CU.UUU.A.GCGUUA.......................A..G..G.A.G...CGUCA..AGCAC..GCA.C..U..G..G..UCGUAACCC.........AAAAA.CGCUUGAAACCAUCGAAA.U.C.CC...UGC.A................................................AG.CAA.A.G.U.A.C.C.A..A.GC.UUC..AA.AGC.A.....GGC..AAA....................................GGUC.UAAAAGACG...C.U.G.UAAA.........CUA...A........-...U.....A....C..C...AG.C---..A.A.U.................................................................C.AA.GC.U..G.U....G..A.U......A.U.A.U...C.U...A.A.A.....A..A.G.C......U.-.AC
   NZ_LR134376.1     CU.UUC.G.CUGUAC.......................G..C..G.A.G...CGUGC..UGCUC..GUU.C..U..G..G..CCGUAACCC.........GCAAA.CUGGCGCGACCAUCGAAA.U.C.GC...CGC.C................................................GG.UAA.A.G.U.U.C.C.U..G.CC.UUC..AA.AGC.G.....GGC..AAG....................................GCCC.UGAAAGACG...C.G.G.UCAA.........CUA...A........G...-.....-....-..-...--.----..-.-.-ccgggcgcugauucucaucggca.................ccguccuuggucgcagaccagac..-.--.--.-..-.-....-..-.-......-.A.A.G...U.U...A.G.A.....G..G.G.C......U.C.UC
   NZ_LR134383.1     CU.UUC.U.CCAUUA.......................C..A..A.A.C...CGAGC..UGAAC..GUA.C..C..G..G..UAGAAAUCC.........UCAAA.CAGGUGCGACCAUUAAGA.U.C.AA...GGC.U................................................UC.AAG.A.G.U.U.G.C.C..A.GA.UUU..AA.AGC.C.....GGU..AAA....................................GCAU.UGAAAGA--...G.G.C.UGUA.........CA-...A........G...A.....A....G..C...CU.A---..A.G.U.................................................................U.UU.UG.G..G.U....G..C.U......U.-.A.G...C.U...C.-.-.....-..-.-.-......-.-.--
   NZ_LR134484.1     AC.UUU.G.AAGUAA.......................G..A..G.A.A...AGAGC..UGCUC..GUA.A..A..G..G..ACGCAACCC.........UCAAA.CUAACGAAGUUAUUGAAA.U.C.GC...UGC.A...............................................aGC.AAA.G.U.U.C.C.U.G..C.-U.UUC..AA.AGC.U.....GGU..AAA....................................GCUC.UUAAAGAUG...C.A.G.UUAA.........AUA...A........U...A.....-....-..-...--.----..-.-.-acaauuuaauuc......................................aaaaagaggaguu..-.--.--.-..-.-....-..-.-......A.C.U.A...C.U...U.A.G.....U..A.G.C......U.C.UU
   NZ_LR134485.1     CU.UUU.G.CCGUUA.......................A..A..G.A.G...CGUGC..UGCCC..GUA.C..U..G..G..UCGCAACCC.........GCAAA.CAGGUAAAGAGAUCACCA.U.C.GC...CGC.G................................................GC.UAA.A.G.U.A.C.C.G..G.GC.UUC..CG.UGC.A.....GGU..AAA....................................GCAC.UGAAAGACG...C.G.G.UAAA.........CUA...A........G...U.....G....A..U...UU.CCCC..U.U.U.................................................................G.GG.GA.U..G.U....G..A.C......U.A.A.G...U.A...C.A.A.....G..G.G.C......G.C.AU
   NZ_LR134494.1     UU.CAC.-.-CGUGC.......................G..U..G.A.A...CGUUC..GGCCC..GUA.C..C..G..G..UCGUAACCC.........GCAAA.CCGGUAAAGAGAUCAAAA.U.C.GC...GGC.A................................................GC.CAA.A.G.U.U.C.C.G..G.CC.UUC..CG.UGC.A.....GGG..AAA....................................GCGC.UGAAAGACG...C.A.G.UAAA.........CUG...A........U...U.....G....U..U...U-.----..-.-.-gcgucuaaccguuuag...............................cguuacagggcuuugu..-.--.--.A..A.U....-..-.-......-.-.-.-...-.-...-.-.-.....-..-.-.-......-.-.--
   NZ_LR134515.1     CU.UUU.A.AAGUAA.......................A..C..G.A.G...CGUAA..UGCAC..GUA.C..G..G..G..UCGUAACCC.........ACGUA.CCGGCGAAGAAAUCAAAA.U.C.GC...AGC.A................................................UC.UAA.A.G.U.G.C.C.G..G.CG.UUU..GU.UGC.A.....GGU..AAA....................................GCAU.UAAAAGAUU...U.A.G.UAAA.........AUA...A........U...-.....-....-..-...--.----..-.-.-ucuuugcaaagcu....................................uuuaaagccuagau..-.--.--.-..-.-....-..-.-......-.U.C.A...U.U...C.U.A.....G..-.G.C......U.U.UU
   NZ_LR134531.1     CA.UUU.G.UUGUUC.......................G..U..G.A.G...CGUGC..UGCCC..GUA.C..U..G..G..CCGUAACCC.........ACAAA.CUGGCAAAGAAAUCAAAA.U.U.GC...AGC.A................................................GC.AAA.A.G.U.U.C.C.A..G.CA.UUC..CG.CGC.U.....GGU..AAA....................................GCAC.UGAAAGACG...C.U.G.UUAA.........CUA...A........G...-.....-....-..-...--.----..-.-.-auuuuagcgguuuuugcucaguuag.............guauuaccuucgggcaaugaacuga..-.--.--.-..-.-....-..-.-......-.U.A.G...A.A...U.A.G.....A..G.G.C......G.C.AU
   NZ_LR699119.1     CG.UUU.A.CUGUCA.......................A..A..C.A.G...CGUGC..GGCUC..GUG.A..A..G..G..ACGCAAUCC.........UUCGA.CCGGUGAAAAAAUCAAGA.U.U.AA...AGC.A................................................GC.AAA.A.G.U.A.G.U.G..G.GA.UUC..AA.AGC.U.....GGC..AAG....................................GCAU.UGAAAGAGG...C.G.G.UAAA.........---...-........-...-.....-....-..-...--.----..-.-.-ggccugagauuauccauuac.......................ugcugggugcuuagcucagc..-.--.--.-..-.-....-..-.-......-.U.G.G...U.A...G.A.G.....C..G.G.C......G.C.CC
   NZ_LR778175.1     CU.UUC.U.CAGUUA.......................G..A..G.A.U...AGAGC..AGCCC..GCA.C..A..G..G..ACGUAAUCC.........GCAAA.CGGGAGAAGAGAUAAAAA.U.U.AA...AGC.A................................................UC.AAAaA.A.U.C.C.C.G..U.AU.UUA..-A.AGC.U.....GGA..AAA....................................ACUC.UUAAAGAUG...C.C.G.UAAA.........CUA...A........G...-.....-....-..-...--.----..-.-.-cg...........................................................au..-.--.--.-..-.-....-..-.-......-.A.G.A...U.U...A.U.U.....G..G.G.C......G.C.UU
   NZ_LR822015.1     AC.UUU.G.AAGUAC.......................G..U..G.A.A...CGUGC..UGCUC..GUC.A..A..G..G..UCGUAACCC.........ACAAA.CUGGUGAAACUAUCUCAA.U.C.GC...AGC.U................................................UC.UAA.A.G.U.UcC.U.G..C.AU.UUA..-A.AGC.U.....GGU..AAA....................................GCUC.UUAAAGACG...C.A.G.UCAA.........AUA...A........U...G.....U....U..A...AU.CC-C..-.-.-ccuaag...................................................cuuuua..G.GG.GU.U..U.U....G..A.U......U.-.-.-...-.-...-.-.-.....-..-.-.-......-.-.--
   NZ_LR861803.1     CC.UUC.C.AGGUCC.......................G..C..G.C.G...CGCGC..UGAGC..GUA.C..C..G..G..CCGCAAUCC.........GAAGA.CCGGCGACAGCAUCAAGA.U.C.GC...UGC.U................................................UC.GAAgA.A.U.C.C.U.G..C.G-.UUC..AA.GGC.U.....GGC..AAA....................................GCCC.UGAAGGAUG...C.A.G.UAAA.........CUA...A........U...C.....G....-..-...--.----..-.-.-acucgcuag............................................ggugcuuagc..-.--.--.-..U.-....-..-.-......-.C.A.G...C.G...G.U.A.....G..A.-.-......G.C.GU
   NZ_LR990739.1     CC.UUC.C.AGGUCC.......................G..C..G.A.G...CGCGC..UGAGC..GCA.C..C..G..G..CCGCAAUCC.........GAAGA.CCGGCGACAGCAUCAAGA.U.C.GC...GGC.U................................................UC.GAAgA.A.U.C.C.U.G..C.G-.UUC..AA.GGC.U.....GGC..AAA....................................GCCC.UGAAGGAUG...C.A.G.UAAA.........CUA...A........U...C.....G....-..-...--.----..-.-.-acucgcuag............................................ggugcuuagc..-.--.--.-..U.-....-..-.-......-.C.A.G...C.G...G.U.A.....G..A.-.-......G.C.GU
   NZ_LS483377.1     CC.UUC.C.AGGUCC.......................G..C..G.A.C...CGUGC..UGCGC..GCA.C..C..G..G..CCGCAACCC.........GAAGA.CCGGCGACACCAUCAAGA.U.C.GC...UGC.U................................................UC.GAA.G.A.A.U.C.C.G..U.CG.UUC..AA.GGC.U.....GGC..AAG....................................GCCC.UGAAGGAUG...C.U.G.UAAA.........CUA...A........-...-.....G....C..G...GC.UCGC..U.G.-.................................................................G.GG.UG.C..U.U....A..G.C......U.C.A.G...C.G...G.U.A.....G..A.G.C......G.U.CU
   NZ_LS483422.1     CA.UUC.U.CUGUUC.......................G..U..G.A.G...CGUGC..UGCUC..GCA.C..A..G..G..GCGUAAUCC.........GCAGA.CCGGUAAAGAAAUUCAAA.U.U.GC...UGC.U................................................GC.UAA.A.G.U.A.C.C.U..G.CU.UUC..CG.UGC.A.....GGU..AAA....................................GGCC.UUAAAGACG...C.C.G.UUAA.........UA-...-........-...-.....-....-..-...--.----..-.-.-acuaauuaagucuuauuuuagucuuuu........ugucuuuuuacauuuuagcgaaaacuca..-.--.--.-..-.-....-..-.-......-.A.A.C...U.G...A.C.G.....G..A.A.U......G.C.AU
   NZ_LS483429.1     CA.UUU.A.AAGUAA.......................A..U..G.A.A...CGUGC..UGCUC..GUA.C..U..G..G..UCGUAACCC.........ACAAA.CUGGUGCUGAAAUCCAAA.U.C.GC...AGC.A................................................UC.UAA.A.G.U.G.C.C.A..G.CA.UUU..GU.AUC.U.....GGU..AAA....................................GCAU.UAAAAGAUG...C.A.A.UCAA.........AUA...A........U...U.....G....A..U...--.----..-.-.-aacaucaaug..........................................aaaugaagccc..-.--.--.-..-.U....G..U.C......G.A.U.U...G.C...A.C.A.....G..G.G.U......-.-.--
   NZ_LS483436.1     AU.UUU.G.AAGUUC.......................G..U..G.A.A...CGUGC..AGCUC..GUA.A..A..G..G..UCGCAACCC.........ACAAA.CUGGUAAAGAAAUCACAA.U.U.GC...AGC.U................................................UC.UAA.A.G.U.A.C.C.A..G.CU.UUC..AA.AGC.A.....GGU..AAA....................................GCUC.UUAAAGACG...C.U.G.UAAA.........AUA...A........C...A.....G....C..G...A-.-UUU..A.A.A.................................................................A.AG.CC.U..A.U....U..G.C......G.U.-.-...-.-...-.-.-.....-..-.-.-......-.-.--
   NZ_LS483470.1     CU.UUC.G.UCGUUC.......................G..U..G.A.G...CGUGC..UGCUC..GCA.C..C..G..G..UCGUAACCC.........GCAAA.CUGGCAAAGAAAUCAAAA.U.C.GC...UGC.A................................................GC.CAA.A.G.U.G.C.C.A..G.CU.UUC..CG.UCC.G.....GGC..AAA....................................GCCC.UGAAGGAUG...C.C.G.UGAA.........CUA...A........G...A.....U....U..U...UU.----..-.-.-cccguuuuugcccgguaga.........................gcauuaccuuccggcaaug..-.--.-A.A..C.U....G..G.-......-.U.A.G...A.A...U.A.G.....G..A.G.C......G.C.AU
   NZ_LT615367.1     CG.UUU.U.CUGUGC.......................G..U..G.A.G...CGUGC..AGCCC..GCU.C..C..G..G..CCGCAAUCC.........GCAGA.CCGGAAAAGAAAUCAGUA.U.U.CC...GGC.U................................................GC.UAA.A.G.U.G.C.C.G..G.GU.UUU..CG.UGC.C.....GGU..AAG....................................GCAC.UGAAAGACG...C.G.G.UGAA.........UUG...A........-...-.....-....-..-...--.----..-.-.-uuauucacuaacaaaaucu.........................ggaugggggccguuuuacc..-.--.--.-..-.-....-..-.-......-.-.-.-...-.-...-.-.-.....-..-.-.-......-.-.--
   NZ_LT906439.1     AC.UUU.G.AAGUAC.......................G..U..G.A.A...CGUGC..UGCUC..GUA.A..G..G..G..UCGCAACCC.........ACAAA.CUGGUAAAGAAAUCACAA.U.C.GC...GGC.A................................................UC.AAA.A.G.U.U.CcA.G..C.G-.UUC..AA.AGC.U.....GGU..AAA....................................GCCC.UUAAAGACG...C.U.G.UUAA.........AUA...A........U...A.....A....C..A...--.GCUU..A.A.A.................................................................A.AG.CC.U..A.U....U..G.U......A.U.-.-...-.-...-.-.-.....-..-.-.-......-.-.--
   NZ_LT906448.1     CA.UUC.A.AAGUGA.......................A..U..G.A.G...CGUAA..AGCAC..GUA.C..U..G..G..UCGUAAUCC.........ACAAA.CUGGUGCAGAGAUCAAAA.U.U.GC...AGC.A................................................UC.UAA.A.G.U.U.C.C.A..G.CG.UUC..GU.UGC.C.....GGU..AAA....................................GCAU.UAAAAGACG...C.A.G.UAAA.........AUA...A........U...U.....U....U..-...--.----..-.-.-cauag.....................................................aucaa..-.--.--.-..-.-....-..A.A......A.U.A.U...C.U...A.A.A.....G..C.U.C.....cG.U.AU
   NZ_LT906479.1     CC.UUC.A.CCGUUC.......................G..U..G.A.G...CGUUC..GGCCC..GUA.C..C..G..G..CCGUAACCC.........GCAAA.CCGGUAAAGAGAUCAAAA.U.C.GC...GGC.A................................................GC.CAA.A.G.U.U.C.C.G..G.CC.UUC..CG.UGC.A.....GGG..AAA....................................GCGC.UGAAAGACG...C.A.G.UAAA.........CUG...A........U...-.....-....-..-...AG.UUUG..C.G.U.................................................................C.UA.AC.C..G.U....U..U.-......-.-.-.-...-.-...-.-.-.....-..-.-.-......-.-.--
   NZ_LT907988.1     CG.UUC.G.CCGUGA.......................C..C..G.C.C...CGCGC..UGCGC..GCA.C..C..G..G..CCGCAACCC.........GCGCA.CCGGCGAAACCAUCAAGA.U.C.AA...GAA.G................................................GC.CAA.G.G.U.G.C.C.G..A.AG.UUC..CG.UCC.G.....GGC..AAG....................................GCCC.UGAAGGACG...C.C.G.UCAA.........CUA...A........G...U.....G....U..U...GA.UGCG..-.-.-cca.........................................................aac..C.GC.GG.C..G.U....G..C.C......G.C.G.G...U.U...U.G.C.....-..-.-.-......-.-.--


   Structure         ((.(((................................)..)..).).)....((((...((((...((.(..(..(..(....((..............))....)))))).................((........................................................))...........(.(.(.(.......(((...(.(((...................................................))))..)))........).).).)...............................(.....(....(..(...((.((((........................................................................).)).)).).........)..).)......).........................)..).).)......).).))


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hupB



Position: 308-443, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

C Y U U Y G U R R A R C G Y G C G C C G Y A Y G G Y C G Y A A Y C C R C A R A C Y G G Y R A R R A U Y R A R A U Y R G C R C A A R R U C C R U U Y R G C G G Y A A R G C Y U R A A R G A Y G C G U A A U R A 5'