hupA-yjaH



Position: 5-129, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.U) Reactivity: nanU Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.C) Reactivity: 0C Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.A) Reactivity: 1A Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: 1C Position: 32 (position.label in template: 32.A) Reactivity: 0A Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.A) Reactivity: 1A Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.A) Reactivity: 0A Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.C) Reactivity: 0C Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.A) Reactivity: 0.5A Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.C) Reactivity: 0C Position: 56 (position.label in template: 56.C) Reactivity: 0C Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.A) Reactivity: 0A Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.A) Reactivity: 1A Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.A) Reactivity: 0A Position: 77 (position.label in template: 77.A) Reactivity: 1A Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.A) Reactivity: 1A Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.A) Reactivity: 0A Position: 85 (position.label in template: 85.A) Reactivity: 0.5A Position: 86 (position.label in template: 86.C) Reactivity: 0.5C Position: 87 (position.label in template: 87.A) Reactivity: 0A Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.A) Reactivity: 1A Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.A) Reactivity: 0A Position: 95 (position.label in template: 95.A) Reactivity: 0.5A Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.A) Reactivity: 0.5A Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.A) Reactivity: 1A Position: 101 (position.label in template: 101.A) Reactivity: 0.5A Position: 102 (position.label in template: 102.C) Reactivity: 0C Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.A) Reactivity: 0.5A Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.A) Reactivity: 1A Position: 110 (position.label in template: 110.C) Reactivity: 1C Position: 111 (position.label in template: 111.A) Reactivity: 0A Position: 112 (position.label in template: 112.A) Reactivity: 0A Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.A) Reactivity: 0.5A Position: 115 (position.label in template: 115.C) Reactivity: 0.5C Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.A) Reactivity: nanA Position: 119 (position.label in template: 119.A) Reactivity: nanA Position: 120 (position.label in template: 120.C) Reactivity: nanC Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.A) Reactivity: nanA Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.A) Reactivity: nanA Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.A) Reactivity: nanA Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.C) Reactivity: nanC Position: 137 (position.label in template: 137.A) Reactivity: nanA Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.G) Reactivity: nanG Position: 141 (position.label in template: 141.A) Reactivity: nanA Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.A) Reactivity: nanA Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.C) Reactivity: nanC Position: 146 (position.label in template: 146.A) Reactivity: nanA Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.3')3' 10 20 30 50 100


hupA-yjaH



Position: 5-129, Conformation: #1







Retained alignments:


   NC_004603.1       G.UG.GU..AA...CAA......AU.UGUga.guUAUUA..CUC..A.uAUUAU.G--.---.---..................................gcuaaaaguacgucagaaaaucgaaagaucg........cuuacaaaccuuugccagauggggcauuuau---.G.CU.UUAGA...G.UG.AGA..CGA...AU....U..C.GAU..AA..CAUAUG..........AGAAG......gGA.....AAC.....CU..AAUGAACAAGACCCAAUUAAUCGACUUUAUCGCAGAGAAAGCAG
   NC_005126.1       G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..--GGG.UGC.UGU.CAU..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....UC..UAUGAAUAAGACUGAAUUAGUUGAUGCAAUCGCAGAAAGCACAG
   NC_005966.1       U.AA.AG..CA...UUG......CU.---.....-AUAA..AGG..C..GUCAU.GGCcUUU.UUA..................................aa..................................................................cu-UCaG.CC.UUGGA...U.CU.C-A..--A...AU....A..A.ACG..AA..UUAAGA..........GGACG.......UU.....AUC.....UU..CAUGAAUAAAUCAGAAUUAAUUGAUGCGAUUGCAGAGAAAGGGG
   NC_007204.1       -.-A.GC..--...--G......AA.ACC.....UGUUU..AUGcgU..GAGCC.AAG.UGC.UUU..................................ugauugcuuaaguac........................................ucugagagcgauacaAUG.C.UU.GGCGUgagC.GU.UUU..UUU...AC....C..C.CCU..AA..--AACU..........UGAAG.......GA.....AAU.....UU..UAUGAAUAAAUCAGAAUUAAUUGAUAGUAUUGCUGAGAAAAGUG
   NC_007712.1       G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..G-GGG.GGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.GUA..AA..CACACU..........GUAAG.......GA.....UAA.....CA..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCUGAUAAAGCUG
   NC_007912.1       -.--.GU..GU...UCG......CA.UCG.....UAUCU..GGU..G..AUUUA.AGC.CGG.UC-..................................uagaacgaaua...............................................ccuagguuaagaAUC.G.--.UUAGU...A.AU.UUU..UAU...UA....C..G.AAU..AA..--UAAA..........GAGGG.......GU.....CAA.....UA..AGUGAAUAAGUCAGAAUUGAUUGAAGCGAUUGCAGCUUCUGCGG
   NC_007947.1       G.UU.UC..AU...UGG......GC.ACG.....GGUUG..---..U..GAUAU.UUU.CU-.---..................................ccccuguuacuacuuaaccuggua.....................acgaggcgaaguaucagccuuacca---.A.AA.UUAGC...-.--.UUG..AUA...AC....C..C.AAU..AA..CACAAG..........GACUG.......GA.....CAA.....-A..UAUGAACAAGACAGAACUGAUCGAAGAAAUCGCCAAGGAAGCGG
   NC_008255.1       A.UU.CC..UG...AAG......G-.GCU.....UGCAG..AGU..AagGGUUU.UCC.UAU.A--..................................a....................................................................uUUC.G.UA.UAACA...A.UU.UUA..AC-...--....U..U.UUA..CA..A--ACA..........AAAAC.......UA.....CAC.....AC..UAUGAACAAGGCAGAAUUAAUCGAUGCUAUCGCAGCUGAAUCAA
   NC_008344.1       G.GC.UU..GA...UAU......AA.GGG.....UUUAU..ACA..G..AGU--.UGU.---.---..................................cu..................................................................guGUA.A.AA.AGAGG...U.GU.UUU..CCUgcaAC....C..U.AAC.gAA..GCAAAA..........CAAAG.......GG.....GAA.....UU..UAUGAAUAAAUCUGAACUCAUCGAAGCGAUUGCUCGUCAUGCCG
   NC_008610.1       -.--.--..-A...UGU......UG.GAG.....-GUUG..GCA..A..UAGAU.AGU.UUU.UA-..................................uuugcuuuucauucucuac................................cuccuuuaauggccaaccuUUA.G.CA.UUUAG...U.AU.U--..UUU...AC....A..A.AUU..AA..--UUUU..........UCGAG.......GA.....GAA.....AA..AAUGAAUAAAUCAGAAUUAAUCGAUGCAAUUGCAUUAGCAGCAA
   NC_010546.1       G.UG.AA..AC...A--......UU.UAG.....CCUAU..GG-..G..GAUUU.UGG.CGA.UUU..................................augucuauuaagauuacuuaua.........................acucauccuuuucuaacuaggauGUG.C.CA.AAACA...-.CC.AUA..GGA...CA....U..A.AU-..-A..CACAAU..........ACAAG.......GAg..auUAC.....UC..AAUGAAUAAAGGUGAAUUAAUUGAUGCAGUCGCUAAUAAGGCUG
   NC_010554.1       G.UG.GC..UC...A-G......GU.GUU.....---UU..GCU..U..AA--C.UGA.CUC.UCU..................................aaaaaagau...................................................gaauuaaguuUUU.U.CA.CCAGA...U.GU.UUU..UCA...AA....C..GaUAA..AA..CAUACU..........UUAAG.......GA....cUAU.....UU..UAUGAACAAAGCUGAAUUAACCGAAUCAGUUGCUGAAAAAGCGG
   NC_010694.1       G.UU.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.CAG.AAU..................................cuggu...........................................................uuuuccCUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AC..UACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCGG
   NC_011753.2       G.UGaGU..UA...UUA......CU.C--.....-AUAU..UAU..G..GCUAA.AAC.UAC.---..................................ggcauuagagcuaaagaucgacga.....................caaaccuuugccagauggggcauuu-AU.G.UU.UUAGA...G.UG.AAU..CGA...AU....U..C.AAA..AA..UACAAA..........GAAGG.......GA.....AAC.....CUaaAAUGAACAAGACUCAAUUAAUCGACUUUAUUGCUGAAAAAGCGG
   NC_012778.1       U.C-.-C..CC...AUU......UU.GAGccacuUUUUA..UUG..A..CAAAU.UAU.CAA.U--..................................cuagga..........................................................guauaa---.A.UA.AUUUA...U.AC.UUA..UUA...UU....A..C.UUA..AU..UUUUUA..........AGGAG.......GAca.auUUA.....AU..UAUGAAUAAGUCAGAAUUAGUUGCUGCUAUCGCAGAAAAGGCUG
   NC_012912.1       G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGGG.UGC.UGU.UAU..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCUGACAAAGCUG
   NC_012962.1       G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..--GGG.UGC.UGU.UAU..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....UC..UAUGAAUAAGACUGAAUUAGUUGAUGCAAUCGCAGAAAGUACAG
   NC_013456.1       -.UG.GU..AA...CAA......AU.UGUg...aGUUAU..UAC..U..CAUAU.U--.---.---..................................auggcuaaaaguacgucagaaaaucgaaagau.....cgcuuacaaaccuuugccagauggggcauuuau---.G.UU.UUAGA...G.UG.AGA..CGA...AU....U..C.GAU..AA..CCUAUG..........AGAAG......gGA.....AAC.....CU..AAUGAACAAGACCCAAUUAAUCGACUUUAUCGCAGAGAAAGCAG
   NC_013961.1       G.UU.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.CAG.AAU..................................cuggu...........................................................uuuuccCUC.G.CA.CUUGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCGG
   NC_014207.1       A.UG.UA..AA...UUG......AU.GCA.....CUUAU..GGU..G..AU---.---.---.---..................................aaaacaauugacaguuaaauu............................aaaugccagcaaaguaacggu---.-.--.---GC...U.UU.UAU..ACA...AA....C..A.CUU..AU..C--AAG..........GGAA-.......--c...uAAA.....UA..UAUGAAUAAAUCUGAAUUGAUUGAUGCUAUCGCAGCAAGUGCUG
   NC_014306.1       G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.CAG.AAA..................................cuggu...........................................................uuuuccCUC.G.CA.CUCGA...U.AC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCGG
   NC_014387.1       A.UU.UA..GA...UUU......UC.GUG.....UAUUU..UUC..G..G-CAU.UUA.UAG.CU-..................................uguuugcgg...................................................uacaaaauag---.-.--.UGGUA...G.AA.UGG..GCA...AU....G..U.AGU..AA..AAUAUUucu...uuuuGGAGG.......GA.....AAA....uUU..AAUGAACAAGACAGAACUUAUCGAUGCAAUCGCUAAGGAAGCAG
   NC_014388.1       U.UG.GC..AC...UUU......-U.UCG.....CUUUU..---..-..--AUA.UAC.UUG.UAU..................................ggugcauaaa.................................................uuggguguagaAUU.U.UA.CUUGG...-.--.-UA..GUA...AA....A..A.AUA..CU..CAAUUU..........-GAGG.......GAgguauUAA.....AC..CAUGAAUAAGACAGAACUUGUUGAUGCUAUUGCAAAGGAAACUG
   NC_014500.1       G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGU.UAU..................................agca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCUGACAAAGCUG
   NC_015321.1       -.CG.GC..GC...UUU.....uUA.GUG.....UUUGG..CCU..U..GGUA-.---.---.---..................................gagaagcauau................................................uccuauauuuu---.-.--.-UGUU...G.UG.UUA..AUUauuAG....A..A.AUC..AU..UCAAA-..........AAAAA.......AC.....CAA.....AC..UAUGAACAAAGCAGAAUUAAUUGAUGCGAUUGCUUCUGAAGCAG
   NC_015519.1       AuUG.UA..AA...UU-......--.UCC.....UUUAG..AAA..G..AAGGA.UUU.UGU.C--..................................aauaa...........................................................gugaag--A.A.UA.UCCAA...U.AU.GUA..---...AU....U..A.AUU..AA..CA-UCA..........GGGAG.......GG.....AAU.....CU..UGUGAACAAAGCCGAACUAAUUACCGCGAUGGCUGAAAAGAGUG
   NC_016584.1       A.UC.UA..AA...CUA......AG.CAG.....G--AG..AUU..G..GU--U.UUU.--U.---..................................auc................................................................gcg---.A.AA.UAU--...A.AU.UUA..CGU...AG....U..A.GAA..CA..GUUAUUu........aGGAGG.......GA.....CUC.....AU..UUUGAAUAAGGCUGAAUUAGUUAGCGCAGUUGCGGAGAAGGCUG
   NC_016941.1       -.GC.CA..CA...UAA......AU.GAU.....UGCGA..UUU..A..UAUAA.UGC.UUG.---..................................uguuaaa.......................................................guuuuaccAUA.A.UG.AUAUA...A.AC.AUA..UCA...--....U..U.AUC..AA..ACCUCA..........GGAGGu.....gAA.....UGU.....CU..AAUGAACAAAACAGAUUUAAUCAAUGCAGUUGCAGAACAAGCUG
   NC_017025.1       -.-G.UG..UA...AAU......AC.UUG.....CACAA..UUC..A..AUGAU.AAU.UCU.AAA........................................................................................................UUU.G.UA.AUAGA...A.AA.UUA..A--...--....G..U.UUA..AC..CCAAUU..........UAAAU.......AAc...aUUA.....AU..UAUGAACAAAUCAGAAUUAAUCGAUGCAAUGGCAGCUUCUGCUG
   NC_017554.1       G.UG.GC..UA...UCG......GU.GCG.....UGCAG..GCU..G..AAGAG.UGC.CCG.AAG..................................cuggc...........................................................uuuuccCUC.G.CA.CUCGU...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........UUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUGAUCGCAGAAAAAGCUG
   NC_017857.3       -.--.--..AU...GAU......GG.UGA.....U--UG..---..A..CACUA.AUG.UUU.UAC..................................ugucuugacacacuguuuuugcuguaguuagauacacacaaccaauaaggugcgccaggauauauaguguGUC.U.UU.UGGGA...U.UU.CAA..UAC...AU....A..A.UAU..AA..ACGACA..........CGAGG.......AA....uUAA.....GC..UGUGAAUAAAUCUGAAUUAAUCGAUGCAGUUGCUGCGGCCGCAG
   NC_017910.1       G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UAU.UCA..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCUGACAAGGCUG
   NC_018013.1       U.AG.G-..--...---......-G.AU-.....---UU..ACU..G.cGUGGU.UAC.UUG.CU-..................................ugaacggauauuccug.....................................cuaaauuuguaaagcaa---.U.UA.AUCGA...A.GU.UUA..ACC...AA....C..-.---..AA..UUUAAU..........UUAA-.......-A.....AAA.....AU..UAUGAACAAAUCAGAUUUAAUCGAUGCAAUGGCAGCUGAUGCCG
   NC_018691.1       -.--.--..--...---......-U.UGG.....UAUAA..---..-..--AGG.CGG.CUU.CGU..................................cguaagg........................................................agagugcGUU.A.CG.CCU--...C.GA.CCA..CGA...AA....C..C.GGG..AA..ACAGCA..........AAAGG.......GG.....AAU.....UU..UGUGAAUAAAUCAGAACUGAUUGAUGCGAUCGCAGCGGCUGCUG
   NC_018870.1       A.AU.UU..UU...GGG......AU.GGG.....CUUUG..---..-..-----.---.---.---gcagcaggaguuucgguuguucuggcgaauuagg......................................................................---.-.--.-----...-.--.UAG..CCG...AA....C..A.AGA..AA..AUCAAU..........UAAGGa.....gGG.....GUA.....UC..UUUGAAUAAGGCGGAAUUGAUCGCUGCUGUUGCGGAGAAAGCAG
   NC_019776.1       U.UA.GU..GA...GUG......G-.---.....-UAAU..UUG..A..GC---.AAA.UCU.UUA..................................ccau.............................................................aaacuUUG.U.UU.UAUGA...C.AA.UCA..---...--....U..U.UUC..AA..UCAAUU..........AGGAG.......AU.....UAU.....UU..UAUGAACAAAGGUGAAUUAGUUGAUGCAGUAGCGGCAAAGGCAG
   NZ_AP013042.1     -.--.GC..AC...UAA......AU.GAA.....GAGAU..GUG..A..GUAAU.AAU.UUU.UUA..................................uuuucaucu...................................................uccaucagug--A.G.CU.UUUAG...U.AC.UUU..UUA...AA....-..U.AAA..AU..CUUUCG..........AGGAG.......AA.....UGA.....AA..AAUGAAUAAAUCAGAAUUAAUUGAUGCAAUCGCAUCAGCAGCAA
   NZ_AP018150.1     -.--.GU..AG...GCG......CA.GCG.....A-UAA..GCC..G..GUCAG.UAU.UUU.---........................................................................................................---.A.UG.CUGAC...C.GC.UAU..GCU...AG....C.uG.UUU.uAA.cUCAACU.........gAGAAG.......GA....aAUU.....UU..UAUGAACAAGCAGGAACUGAUUGAUGCUAUCGCUUCAAAAACGG
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   NZ_CP006911.1     C.CU.CCuaAA...AAG......GU.GU-.....---AA..---..-..--AAG.UUA.CCU.C--..................................uucc.............................................................gcucuGUC.U.AA.UUU--...-.UU.UUA..ACA...AA....C..U.UUU..AU..UGGA--..........---GA.......GA.....AUU.....AA..AAUGAAUAAAUCAGAAUUAAUUGAUGCAAUCGCUUCAGGUGCUA
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   NZ_CP009712.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..G-GAG.UGC.UGUc-C-..................................aucggc..........................................................auauccGUC.G.CA.CUUGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..UAUACU..........GUAAG.......GA.....UAA.....CG..UAUGAAUAAGACUCAACUGAUUGACGUAAUCGCGGACAAAGCGG
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   NZ_CP011494.1     A.AA.GU..AA...UUG......CC.GAA.....UGGAA..UUC..U..GUAAA.CGC.AUG.---..................................ugcaau..........................................................agucuc--U.G.CG.UUUGA...G.AU.CCA..CCG...AC....C..U.AUA.aCA..UCUUCAaccugaaaucGAAGG.......GG.....UUU.....AG..UGUGAACAAGUCCGAACUUAUUGAUUCAAUUGCAGAGUCUGCUG
   NZ_CP011602.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UGA..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GAAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCAGACAAGGCUG
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   NZ_CP012257.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.CAA..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCAGACAAGGCUG
   NZ_CP012264.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.CAA..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCAGACAAGGCUG
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   NZ_CP012871.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UCA..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAGGCUG
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   NZ_CP013990.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UUU..................................ggca.............................................................uuuucGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GAAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
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   NZ_CP041925.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UCU..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
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   NZ_CP043727.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUUGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGACGUAAUCGCGGACAAAGCGG
   NZ_CP044222.1     A.CA.GG..AA...UCU......GU.GUG.....--UUG..GU-..A..UAAAG.UGG.CCU.G--..................................aagcguua......................................................cugggcaa--A.C.CA.CGCGA...-.AC.AGA..ACA...AA....A..U.AAU..GA..UGCAUU..........UAAGG.......GG.....AAC.....AA..UGUGAAUAAAUCUGAAUUGAUUGAUGCUAUUGCUGCGUCUGCUG
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   NZ_CP050316.1     C.UU.UA..UC...GCA......CU.GUG.....UAUUC..AGU..U..AUUUA.UGA.UUG.CAU..................................uuggug.........................................................uuaagagUUU.U.CU.UAACA...A.GU.UUA..AUA...UU....A..U.CGA..AA..UAGA--..........GAAGG.......UA....cUAA.....UU..UAUGAACAAAACGGAUUUAAUUGAUGCGAUUGCAAGUGCAGCAG
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   NZ_CP050854.1     G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGU.CAU..................................ggca.............................................................uauccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
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   NZ_CP053826.1     A.UG.GC..UA...AAU......-U.UCG.....UUAAA..-AA..C..--UAU.UGU.UUU.UU-..................................uu.................................................................uga---.-.-A.AAAGA...U.U-.GUA..GAA...UUgccgC..A.UCA..CA..CUUCUU..........AAAAG.......GA.....UGA.....UU..CAUGAAAAAAGCUGAAUUUAUUCAAGCUGUUGCCGACAAGGCUG
   NZ_CP053835.1     A.AA.AC..GA...UUU......UU.GAU.....UAUUU..UUU..U..UAUAU.UUU.UUU.---..................................cucuaagcucccuaauuu..................................uagcuauuucaaagcuua--A.A.UA.CUAUA...A.AG.UUU..UCA...C-....A..A.UUU..AA..UUUUAU..........ACAAG.......GAg...uUCA.....UC..CAUGAACAAGGCAGAAUUUAUCGAUGCAGUAGCUGCAAAAGCUG
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   NZ_CP054020.1     A.UU.GG..CG...UUU......UU.AGG.....UGUUU..UUC..C..----U.UGA.---.---..................................cacuguagagucuagauugc..............................uauaaaugcuaaagcuuuuc---.-.-A.---GC...U.GG.AUA..CUA...UA....A..A.ACG..AA..AACUCA..........UGGAG.......--.....AAA.....AU..GAUGAAUAAAUCUGAACUAAUCAGUGCAAUCGCAGAAGAAUCAG
   NZ_CP054043.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGU.UCA..................................ucggc...........................................................auauccGUC.G.CA.CUUGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGACGUAAUCGCGGACAAAGCGG
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   NZ_CP054143.1     C.AA.GC.gUA...GUU.....gAC.ACG.....UAUUU..-UU..A..CUGCU.UGA.UAU.AAC..................................cg..................................................................uuGUA.G.CA.AACGA...A.AUcACA..GUU...AA....A..U.UUA..AU..UAAAUU..........GAAAG.......GG.....GAU....gUA..AGUGAAUAAAUCUGAACUCAUCGAUGCAAUCGCUGAAUCUGCUG
   NZ_CP058278.1     C.AG.CC..AA...AAG......AC.UUG.....UGUAA..UUG..G..GA---.-AA.UCC.AC-..................................a...................................................................uaAUU.U.UG.UAAGA...C.AA.UUA..AUU...AA....U..U.UUA..AC..CAAACA..........AUUAA.......UAa..cuA--g...aAU..UAUGAACAAAUCAGAAUUAAUCGAUGCAAUCGCUGCAGACGCAG
   NZ_CP059558.1     -.CC.CU..AA...AGC......AU.UGC.....UAUAA..AGG..C..GGCAU.GGC.CUU.UUA..................................aa..................................................................cuAUA.G.CC.UUGGA...U.CU.UAA..CAA...AC....-..-.---..--..GAUAUU..........AAGAG.......GA.....UAUuuuuuAU..CAUGAAUAAAUCAGAAUUAAUUGAUGCGAUUGCUGAAAAAGGGG
   NZ_CP059563.1     A.UG.CU..UG...ACA......CU.GCU.....UUUUG..---..-..----C.CGC.UUG.AUA..................................uaaagccaaacuguugcau...............................uacgcaccccacacgcccguUUG.A.CG.GCGGG...C.AU.UUU..CCA...UA....U..U.UUA..CC..CCCAUA..........GAAAG......gGA.....AUG.....AU..UAUGAACAAAUCAGAACUGAUUGAUGCCAUCGCCCAAGAAUCCG
   NZ_CP060401.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..--GGG.UGC.UGU.CAA..................................aucggc..........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....UC..UAUGAAUAAGACCGAAUUAGUUGAUGCAAUUGCAGCAGGCGCAG
   NZ_CP061081.1     C.UU.CU..CG..cUCG......GC.-CU.....UUUUG..GUA..G..GU---.-UA.UAU.---..................................ug..................................................................cg-CC.G.AA.AAAAA...U.AC.UAA..G-G...AA....C..C.ACG..AA..AAUACU..........GAAGG.......GG.....UAC.....AA..CGUGAACAAAUCUGAAUUGAUUGAUGCUAUUGCAGCGUCUGCUG
   NZ_CP062500.1     G.UGaGU..UA...UUA......CU.CAU.....AUUAU..---..G..GCUAA.AAC.UAC.---..................................ggcauuagagcuaaagaucgacga.....................caaaccuuugccagauagggcauuu-AU.G.UU.UUAGA...G.UU.AAU..UGA...AU....U..C.GAA..AA..UACUAA..........GAAGG.......GA.....AAC.....CUaaAAUGAACAAGACUCAAUUAAUCGACUUUAUUGCUGAAAAAGCGG
   NZ_CP063425.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UGA..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GAAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCAGACAAGGCUG
   NZ_CP064876.1     U.UG.UG..AG...GCA......U-.AUC.....AGUAC..---..-..-AACC.UGU.UAU.UUA..................................uugcacc........................................................augaguaUAG.G.CA.CGUUA...-.--.-UA..AU-...AG....U..C.CCU..AA..UUACAU..........AUAAA.......GAgg.ugCAG.....AA..AAUGAAUAAAACAGAAUUAAUAAAAGUAGUAGCAGAUAAAGCAG
   NZ_CP064936.1     U.AG.GG..UA...UAA......U-.---.....UGUAA..UG-..-..--UUG.CGC.UUU.AAU..................................ca.................................................................gguAUU.G.CG.CA---...-.CA.GAA..---...--....U..U.UUA..AA..UUGG--..........----A.......GA.....UAU.....AU..AAUGAACAAGACAGAAUUGAUUGAUGCUAUUGCAAACGACACCG
   NZ_CP065044.1     G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UAC.CAC..................................acccugaaaaggg............................................aaauggcauauccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
   NZ_CP065150.1     G.UGaGU..UA...UUA......CU.CAU.....---AU..UAU..G..GCUAA.AAC.UGC.---..................................ggcauuagagcuaaagaucgacgac....................aaaccuuugccagauggggcauuua--U.G.UU.UUAGA...G.UG.AAU..UGA...AU....U..C.AAA..AA..UACAAA..........GAAGG.......GA.....AAC.....CUaaAAUGAACAAGACUCAAUUAAUCGACUUUAUUGCUGAAAAAGCGG
   NZ_CP065534.1     G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.AAU..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCUGACAAGGCUG
   NZ_CP065626.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAGCUGAUUGAUGUAAUCGCAGACAAGGCCG
   NZ_CP065838.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGGG.UGC.UUU.UUU..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
   NZ_CP065921.1     G.CG.AU..UA...AAU......CA.ACG.....UUUUUcuUGU..A..UAAAU.CGU.---.---..................................ugcagucuugcauucgcuu................................guguuaaagucauaccauaAUG.G.UA.AUUGA...A.UU.AUC..AUU...AC....A..U.--A..AC..CUUUGA..........GGAGG......uGA.....AUU.....GA..CAUGAACAAAACUGACUUAAUUAACGCUGUUGCAGAACAAGCUG
   NZ_CP066119.1     C.-C.CC..CA...AAG.....cAU.UGC.....UAUAA..AGU..C..GUCAU.GGC.CUU.U--..................................gau...............................................................cuac--A.G.CC.UUGGA...A.CU.UAA..ACA...AA....C..-.--G..AA..AUAAGA..........GGACG.......UA.....AUC.....UU..CAUGAAUAAAUCAGAAUUAAUCGAUGCGAUUGCAGAAAAAGGGG
   NZ_CP067014.1     G.UU.GC..GG...UGA......CA.---.....-GUAA..UCA..G..UG---.UGU.UAA.A--..................................gucua...........................................................accauaA--.U.GA.UAUAA...U.GA.-UA..--U...CA....U..U.AUC..AA..ACCUCA..........GGAGGu.....gAA.....UUC.....AU..AAUGAAUAAAACUGAUUUAAUCAAUGCAGUUGCAGAACAAGCUG
   NZ_CP068029.1     -.--.-U..UA...UCA......GU.GUG.....U-UAA..AGU..C..--AAA.UCA.UAA.---........................................................................................................---.U.GA.UAUUA...A.UU.AUA..UCA...--....U..U.AUA..AA..ACCUCA..........GGAGGu.....gAA.....UUC.....AU..AAUGAAUAAAACUGAUUUAAUUAAUGCAGUUGCAGAACAAGCUG
   NZ_CP068439.1     A.AA.AC..--...---......-A.GUG.....A-UUU..ACA..G.cGUGGU.UAC.UUG.---..................................ccugaacggauauuccu...................................guuaaauuuguagggcaa---.U.UA.AUCGA...A.GU.UUA..ACC...AA....-..-.--C..AA..UUUAAU..........UUAA-.......-A.....AAA.....AU..UAUGAACAAAUCAGAUUUAAUCGAUGCAAUGGCAGCUGAUGCCG
   NZ_CP069510.1     U.UG.CC..UA...UUU......GA.GAA.....AUUUG..AA-..-..--CUU.UGA.AUU.---..................................aagcuacaccaag............................................uuauaucaacccu--U.U.C-.GGCGA...-.UU.UUC..GCC...AU....A..A.CUA..AA..CAAUCU..........UUGAG.......GA....uUAA.....AC..UAUGAACAAAAGUGAAUUAAUUGAUGCUAUCGCAGCAAAAGCAA
   NZ_CP069798.1     G.UG.CU..UG...ACA......CG.GUG.....AUUUU..---..G..G-GCU.UGC.UAU.AAA..................................ggcaacgugcuguuuua....................................cccaaacuagcaagcccGUU.G.CG.GGCGA...A.UAgUUG..ACU...UA....C..C.AUA..-A..C-AACA..........GAAAG......gGA....cUUC.....AU..AGUGAAUAAGUCUGAAUUGAUUGAAGCCAUCGCUCAGGAAGCGG
   NZ_CP071325.1     G.GC.AU..UU...UGU......GA.ACU.....U----..GCG..C..UCAGU.UUA.UGG.UUA..................................aagagcccgcaccuaagcacaugauagccg..........acaaaccuuugccacacaggcuucuuuugaAUU.A.GA.GUUGA...U.GC.GUC..--U...UA....A..G.AAA..AA..ACCUUA..........GAAGG.......GA.....AAC.....CU..AAUGAACAAGACCCAACUGAUUGACCUGAUCGCUGAAAAAGCAG
   NZ_CP071383.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UUU..................................ggca.............................................................uuuucGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GAAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
   NZ_CP071409.1     G.UG.GC..UA...UCG......GU.GCG.....UGCUG..GCU..G..AAGAG.UGC.CGA.AUA..................................cggcu............................................................uuuccCUC.G.CA.CUUGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCAG
   NZ_CP071487.1     G.UG.AU..UU...AG-......CU.AACa...aUUUUU..GCA..U..U-AUU.UGC.UUU.GAG..................................aaucgggcaguuugaauuaagcu.......................acacgucgcauuuugcaauuuuauUUG.G.CA.AUUAA...U.GCcAUC..UUA...AC....U..G.AUA..CA..CAUCUU..........UAGAG.......GA.....UAA....aAC..UAUGAACAAAACUGAGUUAGUCGAUGCAAUCGCAGCAGGUGCAG
   NZ_CP071766.1     C.AA.AG..CA...UUG......CU.AU-.....---AA..AGG..C..GUUAC.GGU.AAU.UU-..................................aaa...............................................................uuaa--A.U.CU.CUGGA...C.CU.UAA..AUA...AA....C..G.AU-..-A..UUAAGA..........GGACG.......UA.....AUU.....UU..CAUGAAUAAAUCAGAAUUAAUCGAUGCAAUUGCAGAGAAAGGGG
   NZ_CP071802.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAAGUAAUCGCGGACAAGGCGG
   NZ_CP072134.1     U.AU.UC..AU...GCU......GU.AUG.....UUUAU..ACA..A..--UAU.UUU.UAU.UAA..................................uaugaacucaccggcuuuuaauuagucagaa.......ccacaacaaaugucguugcaauccaacgcacuUUU.G.AA.UAU--...-.AC.CUA..AUG...AA....C..A.CUU..UA..AAAACG..........GGAUG.......UA.....GAA.....AC..AAUGAAUAAAUCACAACUUAUCGACGCUAUCGCAGAAGGCUCGG
   NZ_CP072455.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..--GGG.UGC.UGU.CAA..................................aucggc..........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....UC..UAUGAAUAAGACUGAAUUAGUUGAUGCAAUCGCAGCAGGUGCUG
   NZ_CP072652.1     G.UG.GC..UA...UCG......GU.GUG.....UGUAU..GCA..G..GAAAG.UGC.UGUc-AA..................................ucagc...........................................................auauccGUC.G.CA.CUCGG...U.GC.UUU..GCA...AA....C..G.AUA..AA..UACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUCGCGGACAAGGCUG
   NZ_CP073101.1     G.UG.AA..UA...UGG......GC.UUU.....UCACU..UAA..A..AAAUG.UUG.UCA.UAU..................................caac..............................................................guuuGUA.C.GA.UAUGA...U.UA.AUC..---...--....C..C.GUA..AA..CUCUCU..........GUGAGaggagguGA.....AUC.....GU..GAUGAACAAGACUGAAUUGAUCCAAGCAGUUGCUGAAAAAGCCG
   NZ_CP073241.1     U.AA.AG..CA...UUG......CU.---.....-AUAA..AGG..C..GUCAU.GGCcUUU.UUA..................................aa..................................................................cu-UCaG.CC.UUGGA...U.CU.CAA..---...AU....A..A.ACG..AA..UUAAGA..........GGACG.......UU.....ACC.....UU..CAUGAAUAAAUCAGAAUUAAUUGAUGCGAUUGCGGAGAAAGGGG
   NZ_CP073262.1     G.UG.GC..UA...UCG......GU.GCG.....CGCAG..GCU..G..AAGAG.UGC.CAG.CCG..................................uuggc...........................................................uuuuccCUC.G.CA.CUUGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUCGAUGUAAUUGCAGACAAAGCGG
   NZ_CP074352.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UAA.UCA..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAGGCUG
   NZ_CP075361.1     C.UU.GG..UU...CAG......CU.GUU.....UCUUU..GAA..U..AAA--.---.---.---..................................cuucgcc........................................................aauccgg---.-.--.-CUGA...G.UC.GUA..ACC...AG....C..G.GAA..AA..AAACAC..........GAAAG.......GAa...uUAC.....CU..CAUGAACAAGAAUGAACUGGUUGCUGCCGUUGCAGAAAAAUCAG
   NZ_CP076643.1     U.UG.UG..AG...UGA......AU.ACU.....CAUAU..UAU..G..GUUAA.AAC.UACgU--..................................cagagagacacaaguuacgcgac........................aaaccuuugccagacggggcauuUAU.G.CU.UUAGA...G.UG.AAC..UCA...AU....U..C.GAU..AA..CCUAUG..........AGAAG......gGA.....AAC.....CU..AAUGAACAAGACCCAAUUAAUCGACUUUAUUGCCGAAAAAGCAG
   NZ_CP077366.1     G.UG.GC..UA...UCG......GU.GCG.....UGCAG..GCA..G..AAGAG.UGC.CAG.AAU..................................auggc...........................................................uuuuccCUC.G.CA.CUCGU...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........UUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUGAUCGCAGAAAAAGCUG
   NZ_CP080328.1     G.CA.GC..U-...---......-A.UGC.....UUUGA..GGU..U..GAUGC.ACU.---.---..................................cgguga..........................................................ccguac---.C.GU.UCAGA...G.CC.AUU..UUU...UG....-..-.--A..AA..--CAGU..........UAAGG.......GG.....UGA.....AG..UGUGAAUAAGUCCGAGCUGAUUGAAGCUAUUGCCGCGUCUGCAG
   NZ_CP080429.1     -.-C.AC..UU...GCA......UA.GUA.....UGUAU..UUC..C..UGCUA.AAU.UUG.UA-..................................ggac..............................................................ggga--U.A.UA.UAAAA...G.CA.UUA..AUU...UU....A..A.CAA..AA..CAAUUA..........AUAA-.......CA.....AUU.....AU..UAUGAACAAAUCAGAAUUAAUCGACGCAAUGGCUGCAGACGCAG
   NZ_CP081864.1     G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UGA..................................gcau..............................................................auccGUC.G.CA.CUCGA...U.GC.UAA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUGAUUGCAGACAAAGCUG
   NZ_CP082141.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.CAG.AAA..................................cuggu...........................................................uuuuccCUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCGG
   NZ_CP082346.1     G.UG.GC..UA...UCG......GU.GCG.....UGCAG..GCU..G..AAGAG.UGC.CAG.AAU..................................auggc...........................................................uuuuccCUC.G.CA.CUCGU...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........UUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUGAUCGCAGAGAAAGCGG
   NZ_CP082787.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGUc-C-..................................aucggc..........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUCGCGGACAAGGCUG
   NZ_CP083448.1     G.UG.GC..UA...UCG......GU.GCG.....UGCAG..GCU..G..AAGAG.UGC.CAG.AAU..................................auggc...........................................................uuuuccCUC.G.CA.CUCGU...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........UUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUGAUCGCAGAAAAAGCGG
   NZ_CP083638.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UAU.UCU..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCAGAGAAAGCAG
   NZ_CP083737.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUCGCGGAAAAAGCUG
   NZ_CP083760.1     -.--.--..--...GGU......AU.AUG.....UGCUU..GCA..U..UUGAU.UGA.UUU.AC-.......................................................................................................cAUU.A.UA.UUUGU...U.AC.AUC..AAA...AU....G..U.UUA..AA..UGUUAA..........UUAAA.......AAu..uuAAA.....AU..UAUGAACAAAGCUGAAUUGAUUGACGCUAUGGCUGCAGGUGCAG
   NZ_CP084032.1     G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UAC.CAC..................................acccugaaaaggg............................................agauggcauauccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
   NZ_CP084521.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGUc-AA..................................uuggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAGCUGAUUGAUGUAAUUGCAGACAAGGCCG
   NZ_CP084703.1     -.-U.AU..UA...UCG......UU.GUC.....AA---..---..-..--CAU.UGU.UAU.UUU..................................ggguuaauuuguugua......................................cgauaaugcuguguauGAA.A.CA.AGG--...-.--.UAA..AUA...UU....C..G.AAA..AA..-UGAAG..........GAGAG.......AG.....AGA.....AA..CAUGAACAAAACAGAAUUAAUUAACGCAGUAGCAGAGAAGGCAG
   NZ_CP085096.1     A.UU.CC..AG...UGA......UU.AUG.....GUCAU..UGA..A..UAGA-.UAA.UCU.UAA..................................ac..................................................................guUGU.U.UA.UUCCA...C.CA.AUG..UCA...AA...uU..U.AUU..UA..AAAAUA..........GAAGG.......UA....cUAG.....UC..UAUGAACAAAACAGAUUUAAUUGAUGCUAUCGCAAGCUCAGCUG
   NZ_CP085627.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.CAG.AAU..................................cuggu...........................................................uuuuccCUC.G.CA.CUUGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..UACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCGG
   NZ_CP086253.1     G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UAC.UAC..................................acccuaaaacggg............................................auggggcauauccAUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
   NZ_CP087880.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UCU..................................ggca.............................................................uuuucGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCAGACAAAGCAG
   NZ_CP089203.1     G.UGaGU..UA...UUA......CU.CA-.....--UAU..UAU..G..GCUAA.AAC.UAC.---..................................ggcauuagagcuaaagaucgacga.....................caaaccuuugccagauggggcauuu-AU.G.UU.UUAGA...G.UA.AAU..UGA...AU....U..C.AAA..AA..UACAAA..........GAAGG.......GA.....AAC.....CUaaAAUGAACAAGACUCAAUUAAUCGACUUUAUUGCUGAAAAAGCGG
   NZ_CP089919.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGGG.UGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAA......gGA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
   NZ_CP089932.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.CAG.AAU..................................cuggu...........................................................uuuuccCUC.G.CA.CUCGA...U.GU.UUA..GCA...AG....C..G.AUA..AA..UACACU..........GUAAG.......GA.....CAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCGG
   NZ_CP090145.1     U.UG.--..UA...AAC......AC.UUG.....UACAA..UCC..A..G-UUA.UAC.GAG.UAA.......................................................................................................aUUU.G.UG.UA---...G.AA.AUA..AUU...AA....G..U.UUA..AC..CAAAUU.........aAUAAA......cAU.....UUU.....AU..UAUGAACAAAUCAGAAUUAAUCGAUGCAAUGGCAGCUUCUGCUG
   NZ_CP090614.1     G.UGaGU..UA...UUA......CU.CAU.....---AU..UAU..G..GCUAA.AAC.UAC.---..................................ggcauuagagucaaagaucaucga.....................caaaccuuugccagauggggcauuu-AU.G.UU.UUAGA...G.UG.AAU..UGA...AU....U..U.AAA..AA..UACAAA..........GAAGG.......GA.....AAC.....CUaaAAUGAACAAGACCCAAUUAAUCGACUUUAUUGCUGAAAAAGCGG
   NZ_CP090968.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAGCUGAUUGAUGUAAUUGCAGACAAGGCCG
   NZ_CP091509.1     C.GG.CA..GA...UGU......AC.GGA.....UUUGU..---..-..-ACCU.AAA.CG-.---..................................cc.................................................................cga-UU.U.UU.AGGGG...-.--.-UU..UCA...UU....A..U.UUC..AA..ACGAUA..........GAAAG......gGA....cUUA.....AU..UGUGAACAAGUCUGAAUUGAUUGAAGCUAUUGCCCAAGAGGCUG
   NZ_CP092359.1     -.--.GC..AA...UAA......AA.A--.....--UUU..GCC..C..AAAUG.CCC.AAA.---..................................u....................................................................a-UC.G.GG.CGUUC...U.AC.CUU..AUU...UU....U..G.ACU..-C..CUUAAU..........GAAAG.......GA.....ACU.....UG..UAUGAAUAAAUCUGAAUUGAUUGAUGCGAUUGCAAAAGAAUCUG
   NZ_CP092384.1     G.UGaGU..UA...UUA......CU.CAU.....---AU..UAU..G..GCUAA.AAC.UAC.---..................................ggcauuagagcuaaagaucgacga.....................caaaccuuugccagauggggcauuu-AU.G.UU.UUAGA...G.UG.AAU..UGA...AU....U..C.AAA..AA..UACAAA..........GAAGG.......GA.....AAC.....CUaaAAUGAACAAGACUCAAUUAAUCGACUUUAUUGCUGAAAAAGCGG
   NZ_CP093242.1     G.UG.GC..UA...UCG......GG.GCG.....UGUAU..-CA..G..G-GGC.UGU.CUA.UUU..................................ggca.............................................................uauccGAC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACUg........uGUAAG.......GA.....UAA.....UU..UAUGAACAAGACCGAAUUAGUUGAUGCUAUCGCAAAAAAUGCUG
   NZ_CP093328.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGGG.UGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUUGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAA......gGA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
   NZ_CP093332.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UUU..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCUGACAAGGCUG
   NZ_CP094242.1     C.CU.GU..AA...AAU......AG.GGC.....AAUU-..---..-..--CCG.CAU.UUU.UU-..................................gcuugacacgguauuuucagaauugcuauaaag....cgcaaagguacucaaaaguacgaagccccgagu---.A.UU.CGG--...-.GC.AUU..UCA...UU....A..U.UUU..CA..ACGAUA..........GGAAG......gGA.....CUG.....AU..UGUGAAUAAGUCUGAAUUGAUCGAAGCAAUUGCUCAAGAAGCCG
   NZ_CP094740.1     G.CG.AU..UA...AAU......CA.ACG.....UUUUUcuUGU..A..UAAAU.CGU.UGC.AG-..................................ucuugcauucgcuugu.....................................guuaaagucauaccauaAUG.A.UA.AUUGA...A.UU.AUC..AUU...AC....A..U.--A..AC..CUUUGA..........GGAGG......uGA.....AUU.....GA..CAUGAACAAAACUGACUUAAUUAACGCUGUUGCAGAACAAGCUG
   NZ_CP094825.1     A.UU.GC..AG...UUG......CA.GUA.....UUCGU..---..-..----U.GUG.UUA.A--..................................agu................................................................cau-AC.C.AU.AAUGA...U.AU.UAA..GUU...AU....C..A.UUA..UA..AACCCUa.......ggGGAG-g....ugAA.....UUC.....AU..AAUGAACAAAACAGAUUUAAUCAAUGCUGUUGCAGAACAAGCUG
   NZ_CP095443.1     G.UG.GC..UA...UCG.....gGG.GCG.....UGUAU..-CA..G..G-GGC.UGU.CAA.UUU..................................ggca.............................................................uauccGAC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACUg........uGUAAG.......GA.....UAA.....UU..UAUGAACAAGACUGAAUUAGUUGAUGCUAUCGCAGAAUCAGCAG
   NZ_CP096201.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UAU..................................ggca.............................................................uuuucGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCGGACAAGGCUG
   NZ_CP100494.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UCU..................................ggca.............................................................uuuucGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAAUUGAUUGAUGUAAUUGCAGACAAGGCUG
   NZ_CP101527.1     A.UA.CG..UA...UAAc....aCA.ACG.....CUUCU..GU-..G..GU-AA.UUG.UUA.CU-..................................gcuuggag.....................................................auauacgacUUU.U.AA.UUCGA...-.AU.UCU..GUU...AA....U..U.AA-..GA..UAUAAA..........AAAAG......gGG.....UUA.....AG..UGUGAACAAGUCUGAACUUAUCGACGCAAUCGCAGCAUCAGCAG
   NZ_CP102096.1     A.UU.GU..--...-GA......GU.CAA.....--UAC..CCA..G..AAUAU.GGC.UA-.---..................................aaacaacgccaugaaagucaaagaucg...............cuuacaaaccuuugccagauggggcauuUAU.G.CU.UUAGA...G.UG.AGC..UGA...AU....U..C.GAU..AA..CAUAUA..........AGAAG......gGA.....AAC.....CU..AAUGAACAAGACCCAAUUAAUCGACUUUAUCGCAGAAAAAGCAG
   NZ_CP104006.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UGUc-AA..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGACGUAAUCGCGGACAAAGCGG
   NZ_CP107077.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UUU.UGA..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACAUU..........GAAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUUGCAGACAAGGCUG
   NZ_CP109947.1     G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UAC.CAU..................................acccuaaauggg..............................................aagggcauauccCUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCGGACAAAGCUG
   NZ_FO704550.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..--GGG.UGC.UGU.CAA..................................aucggc..........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....UC..UAUGAAUAAGACUGAAUUGGUUGAUGCAAUUGCAGCAGGUGCAG
   NZ_FO704551.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..--GGG.UGC.UGU.CAA..................................aucggc..........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....UC..UAUGAAUAAAACCGAAUUAGUUGAUGCAAUUGCAGCAGGCGCAG
   NZ_LN999832.1     G.UC.AU..UC...UUA......AU.ACG.....UAUAU..AUA..A..GAAAG.UGG.UAUc-AA..................................ucagu...........................................................auauccGUU.G.UA.UUUGA...U.AU.UUU..--A...AA....A..A.AUA..AA..CACACC..........AUAAG.......GA.....UAA.....CA..UAUGAACAAGGCUCAAUUGAUUGAUAUAAUUGCUUAUAAAGCUU
   NZ_LN999835.1     U.UG.GC..UA...ACG......GU.GCGu...uUAUUU..CAA..A..UAAAU.AAC.UUU.AA-..................................cucagc..........................................................auaguuAUC.G.CA.CUUAA...U.UC.UUG..GUA...AU....C..G.AUU..AA..CACACU..........AUUAG.......GA....uCAU.....AA..UAUGAAUAAAACUCAGCUAAUUGAUAUUAUUGCAGAUAAAGCUG
   NZ_LR130778.1     G.UC.GC..UU...AGC......GA.UUA.....U-UAU..AUA..G..CCAAA.UAA.UAU.---..................................ggcgc............................................................aaaag---.U.UG.UUUAA...U.AA.UUC..AAU...AA....-..-.--A..AA..UGUAGA..........GGAGG.......AG.....UUA.....UU..UAUGAACAAAUCUGAAUUAGUAGCUGCAAUGGCAGAAAAAACUG
   NZ_LR134365.1     A.UG.AC..UG...UAU......A-.AA-.....-AUUU..CGC..C..GUCGG.UGC.A--.---g...............................aa......................................................................---.G.CG.CCGGA...C.AG.AUC..---...--....C..U.ACA..AA..CUCACA..........GUAAA.......GG.....UAA.....AU..UAUGAACAAGACGGAAUUAGUUGACGCAAUCGCUGCCGCUGCAG
   NZ_LR134494.1     G.UG.GC..UA...UCG......GU.GCG.....UGUAU..GCA..G..G-GAG.UGC.UGU.ACA..................................ucggc...........................................................auauccGUC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAACAAGACUCAACUGAUUGAUGUAAUCGCGGACAAGGCUG
   NZ_LR134503.1     -.--.-C..UG...UUA......AA.UA-.....--UUU..---..G..GAAAA.CAU.UUGc-A-..................................caauaug.......................................................aaaaauguUUU.A.UA.UUUGC...-.--.UUU..GAU...AA....U..G.AUA.cUA..ACUUAA..........AUAAU.......UA.....AUA.....AU..UAUGAACAAAUCAGAAUUAAUCGACGCUAUCGCAAAAGACGCGA
   NZ_LR134515.1     -.-A.AG..UU...UCA......AU.UAA.....GCUAG..---..U..AAACG.UUU.UAC.---..................................gcaacaa.......................................................uuucggacGUG.U.AA.CGUCA...-.--.-UU..UAA...UC....U..A.AAA.uAA..--AUCU..........UAGAG.......GA.....UAC....aAU..CAUGAACAAAACUGAGUUAAUCGAUGCAAUCGCAGCUGGUGCAG
   NZ_LR134531.1     G.UA.GC..UA...UCG......AG.ACG.....CUUAG..GCA..A..A-GGG.UAA.---.---..................................agaguuuucu..................................................uucccugccc---.G.UA.UUCGA...U.AC.AUU..GCA...UG....C..G.AUA.aAA..UACAUU..........GUAAG.......GA.....UAA.....UU..UAUGAACAAGACUCAACUGAUUGACGUAAUUGCAGAUAAGGCUG
   NZ_LR699007.1     G.UG.GC..UA...UCG......GG.GCG.....CGU--..GUA..U..CAGGGcUGU.CAA.A--..................................aggca............................................................cauccGAC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAU.....UU..UAUGAAUAAGACUCAAUUGAUUGAUGCUAUCGCAGAAAAAGCAG
   NZ_LS483250.1     -.--.GC..GA...UAA......AU.---.....CCUUU..GC-..G..GUCAA.CGG.UGU.UU-..................................uuga.............................................................auaga---.G.UG.UUUAA...UaGU.UUA..--A...UG....U..U.AUU..GA..AUAGUA..........GAAAG.......GA.....CAU....uCU..UAUGAAUAAAACUCAAUUAAUCGAUGCAGUUGCAGCGAAAGCAG
   NZ_LS483422.1     G.UG.GC..UA...UCG.....gGG.GCG.....UGUAU..-CA..G..G-GGC.UGU.CAA.UUU..................................ggca.............................................................uauccGAC.G.CA.CUCGA...U.GC.UUU..GCA...AA....C..G.AUA..AA..CACACUg........uGUAAG.......GA.....UAA.....UU..UAUGAAUAAGACUGAAUUAGUUGAAGCUAUCGCCGAAUCAGCAG
   NZ_LS483470.1     G.UG.GC..UA...UCG......AUaACG.....UCUGG..GCU..G..GGGUU.AAC.---.---..................................agagacuuuc.................................................uuuacccaucc---.G.UC.UUCGG...U.AC.AUU..GCA...UG....C..A.AUA.aAA..UACAUU..........GUAAG.......GA.....UAA.....UU..UAUGAACAAGACUCAACUGAUUGACGUAAUUGCAGACAAGGCUG
   NZ_LT615367.1     G.UG.GC..UG...UCG......GU.GCG.....UGUAU..GCA..G..GAGAG.UGC.UAU.CAU..................................ggca.............................................................uuuccGUC.G.CA.CUCGA...U.GC.UUA..GCA...AG....C..G.AUA..AA..CACACU..........GUAAG.......GA.....UAA.....CU..UAUGAAUAAGACUCAACUGAUUGAUGUAAUUGCUGACAAAGCUG
   NZ_LT906463.1     U.AA.UC..AA...UAG.....cGU.GAG.....AUUUA..UCA..-..--CAA.UUU.UAU.---..................................gaaaucuuccuuuccauaagcggaaaguucgauu.auccuuugccgagcugugguugucccgcaacccgcUUC.A.UA.UUAAA...-.--.-CA..UUA...UU....A..G.AUU.cAA..UUAACA..........GAAGG.......UAc...aAAU.....CU..UAUGAACAAAACAGAUUUAAUCGAUGCAAUUGCAAGUGCAGCAG


   Structure         (.((.....((...(((.......(.((.............(((.......(((.(((.......(........................................................................................................)...).)).))).....).))......))).........)..).)))......)))............................................................(((.((..(((....)))..))...)))


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hupA-yjaH



Position: 5-129, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y Y A A R A R G R R A U G A A Y A A R C G A A U U R A U Y G A Y G C A U Y G C R R A G C G 5'