folA



Position: 278-402, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.A) Reactivity: 0.5A Position: 35 (position.label in template: 35.A) Reactivity: 0.5A Position: 36 (position.label in template: 36.A) Reactivity: 0.5A Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.C) Reactivity: 0.5C Position: 39 (position.label in template: 39.A) Reactivity: 1A Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.C) Reactivity: 1C Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.U) Reactivity: nanU Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.A) Reactivity: 0A Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.A) Reactivity: 0A Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.A) Reactivity: 1A Position: 81 (position.label in template: 81.A) Reactivity: 1A Position: 82 (position.label in template: 82.A) Reactivity: 1A Position: 83 (position.label in template: 83.A) Reactivity: 1A Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.C) Reactivity: 0.5C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.A) Reactivity: 0A Position: 90 (position.label in template: 90.A) Reactivity: 0A Position: 91 (position.label in template: 91.A) Reactivity: 0A Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.A) Reactivity: 1A Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.A) Reactivity: 0A Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.A) Reactivity: 1A Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 0.5A Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.A) Reactivity: 0A Position: 113 (position.label in template: 113.C) Reactivity: 0C Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.C) Reactivity: 0C Position: 116 (position.label in template: 116.A) Reactivity: 1A Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.A) Reactivity: 1A Position: 119 (position.label in template: 119.A) Reactivity: 1A Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.A) Reactivity: 0A Position: 125 (position.label in template: 125.A) Reactivity: 1A Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.A) Reactivity: 0.5A Position: 131 (position.label in template: 131.C) Reactivity: 0.5C Position: 132 (position.label in template: 132.A) Reactivity: 0.5A Position: 133 (position.label in template: 133.C) Reactivity: nanC Position: 134 (position.label in template: 134.C) Reactivity: nanC Position: 135 (position.label in template: 135.C) Reactivity: nanC Position: 136 (position.label in template: 136.A) Reactivity: nanA Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.C) Reactivity: nanC Position: 141 (position.label in template: 141.C) Reactivity: nanC Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.U) Reactivity: nanU Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.G) Reactivity: nanG Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.C) Reactivity: nanC Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.A) Reactivity: nanA Position: 158 (position.label in template: 158.U) Reactivity: nanU Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.A) Reactivity: nanA Position: 161 (position.label in template: 161.C) Reactivity: nanC Position: 162 (position.label in template: 162.U) Reactivity: nanU Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.3')3' 10 20 30 50 100 150


folA



Position: 278-402, Conformation: #0







Retained alignments:


   NC_002977.6       GA..-.C.CG.U...C.U..GC.U....C.CG....G.G.GC....G.....-.-..-...-.-C..CG.......GAA....CUCA..................................................UGGUCAU..CG..GCG..G.C.AGC...G...CCG...UU.UAC..GA.AGCC..CU.GCUGC..CGC.GGGC......................CAGGC.GGCUCUAU.CUGACC..CUGAU...CG..A......U...CAC...G....AC...U.A.C...C...C...C...GGU...G...ACAC...................CU.ACUUCCCG..G......A.G.U..U...C..G....C...G...GC.C....GCG.G...A..UU
   NC_003910.7       CA..G.C.GA.U...G.G..UA.U....U.--....-.G.AA....G.....G.C..G...C.UG..AA.......GAG....AUUA..................................................UGGUGAU..UG..GUG..G.U.GGU...G...CAA...UU.UAU..GC.GCAU..UG.UUUAC..CAA.AAGC......................AGACC.GUUUAUAC.AUUACU..CAUAU...UA..A......A...GCU...G....CU...A.U.U...G...A...U...GGC...G...AUAC...................UA.AAUUUCCC..A......A.U.U..A...U..G....A...G...GA.C....GGC.A...G..UU
   NC_004347.2       UG..C.U.AA.A..cG.G..GU.U....G.CU....G.G.CG....A.....U.U..G...-.UG..AA.......GAA....CUGG..................................................UUGUUAU..AG..GUG..G.U.GGA...C...AAU...UG.UAC..AA.GCAG..UU.AUUAC..CUC.AAGC......................CGAUA.GACUCUAC.CUGACU..CAGAU...CA..A......C...CUC...G....AU...G.U.G...G...A...U...GGC...G...AUAC...................UU.UUUUCCCC..G......C.G.U..G...G..G....A...A...GA.C....AAU.G...A..AU
   NC_004556.1       UA..U.C.GU.C..cA.G..GC.G...gC.UG...cG.G.AG....G.....G.U..G...C.CG..AC.......ACG....UUAA..................................................GUGUGAU..UG..GUG..G.A.GGU...G...AAC...UG.UAU..GC.ACUG..AC.UUUGC..CGC.ACGC......................CAAUG.CGAUGUAC.UUAACU..CACGU...GG..A......U...GUG...G....CU...G.U.U...G...C...G...GGCgcuG...ACAC...................GU.AUUUUCCU..A......U.G.U..U...C..G....A...C...GC.C....GUC.G...A..UU
   NC_004578.1       UG..G.G.CG.C...A.A..GA.A....C.AG....-.-.--....G.....G.C..G...U.CG..AU.......GAG....GUGA..................................................UGCUGAU..UG..GCG..G.U.GCG...C...AGC...UU.UAU..GC.GCAG..GG.UCUGG..CGC.AGGC......................GGAUC.GUCUGUAC.CUGACU..C-GCG...UA..G......C...GUU...G....AG...C.C.C...U..gA...A...GGC...G...ACGC...................AU.GGUUUCCG..G......A.A.U..U...C..G....A...U...AC.G....GCG.C...A..GU
   NC_004757.1       AG..C.-.--.-...-.A..UU.U....U.UG....U.G.GU....G.....A.C..G...A.UC..GG.......CAG....AUCU..................................................UCAUCAU..CG..GUG..G.U.GCU...G...AAA...UC.UAU..CA.GCAG..AC.GUUGC..CGU.UCUG......................CCAGC.GUUUAUAU.CUGACC..GAGAU...UC..A......G...CAG...G....AU...U.U.C...G...C...A...GGA...G...AUAC...................UU.UCUUUCCG..G......A.G.U..A...U..G....A...U...CG.U....GAC.A...A..CU
   NC_005126.1       AC..U.G.GC.U...G.U..AG.C....A.--....-.G.GU....G.....A.U..G...C.AG..AA.......GAG....GUUA..................................................UGGUCAU..GG..GUG..G.U.GGU...A...AAG...UU.UAU..GA.CCAA..UU.UAUUU..CAC.GAGC......................GAGUC.GUAUGUAC.CUGACU..CACAU...CG..A......U...GCA...G....AA...G.U.G...A...U...A...GGU...G...AUAC...................GC.AUUUUCCU..G......A.C.U..A...U..G....A...A...CC.G....GAU.G...A..AU
   NC_006395.1       GG..C.C.GA.A...G.C..AG.C....C.GA....U.A.GU....G.....A.C..G...C.AU..CU.......ACG....ACGU..................................................AUGUCAU..CG..GCG..G.A.GCG...A...CGG...UG.UAC..GA.GCAG..UU.UCUCC..CAC.AGGC......................UGACG.AGCUAAUU.CUGACC..GAACU...AG..C......A...GCA...G....CU...U.U.C...G...A...C...GGC...G...AUAC...................UG.UCUUUCCG..-......A.C.U..G...U..C....G...A...CU.G....GUC.G...A..AC
   NC_006513.1       AG..C.G.CU.C...G.A..AG.C....U.--....-.G.CG....G.....G.C..G...-.AC..GA.......GAC...cGUCU..................................................UCGUCAU..CG..GCG..-.G.CGC...C...GAG..cUG.UAU..CG.CCAG..UU.GCUCG..ACA.GCGC......................CGACG.CGCUGCUG.CUUACG..GAGGU...GC..A......C...GCC...G....AU...G.U.U...G...C...C...GGA...G...AUGC...................CU.AUUUUCCG..C......C.G.U..U...C..G....A...C...CG.G....GGA.G...A..CU
   NC_007481.1       CG..C.G.UU.A...A.A..UU.U....A.GU....U.A.CU....G.....A.U..G...U.GG..AA.......GAG....GUGA..................................................UGAUCAU..UG..GUG..G.U.GGA...A...AUA...UU.UAU..CA.ACAA..UU.UUUAG..AAA.GUGC......................ACAAA.GACUUUAU.UUAACC..UUUAU...AG..A......C...UUA...G....AU...G.U.U...G...A...A...GGU...G...ACAC...................UC.AGUUUCCU..G......A.U.U..A...C..G....A...A...AA.A...gUGG.C...A..--
   NC_007484.1       GG..G.C.UU.G...C.A..GG.C....A.GC....G.G.GG....G.....A.A..G...C.AG..AG.......GAG....GUGA..................................................CGGUCAU..UG..GCG..G.G.GCU...U...CUC...UU.UAU..GA.GCAA..CU.AUUGC..CCC.AGGC......................GCGAC.GCAUCUAC.CUCA--..--CUU...UA..G......U...GCG...GggacAU...U.U.C...C...A...G...GGG...G...AUAC...................CU.GGUUUCCU..G......C.C.U..U...U..G....A...U...CC.U....GGU.A...C..UU
   NC_007510.1       GC..UgG.CG.C...U.C..GC.C....G.CG....C.G.CGa..cG.....G.C..G...C.GC..CC.......GAA....GCGU..................................................UCCUGAU..CG..GCG..G.C.GCG...C...AGC...UC.UAC..AC.GGAA..GG.UCUCG..CAC.UCGC......................CGACA.AGCUGGUC.GUCACC..GAGAU...CG..A......U...GCC...G....AC...U.U.C...G...A...U...GGG...G...ACGC...................CU.CGUUCCCG..G......C.G.C..C...C..G....A...C...GC.C....GCG.C...A..GU
   NC_007517.1       CU..U.G.AU.C...C.U..UG.C....G.GG....G.A.CC....G.....C.C..G...-.--..GA.......GAA....GUCU..................................................UCAUCUG..CG..GCG..G.C.GGU...G...AGG...UC.UAC..CG.GGAG..GC.GUUGC..CGC.UGGC......................CGACC.GCAUCCAC.CUCACC..GUUAU...UC..Ac...cgU...GCU...U....A-...-.-.C...G...G...A...GGG...G...ACAC...................CAcCUUUCCCG..A......G.C.U..U...C..C....C...G...CC.G....AUU.U...C..GA
   NC_007614.1       GG..G.-.--.-...G.C..AU.C....C.C-....-.G.AU....C.....A.A..G...G.GA..AC.......GAA....U---..................................................GUUUCGU..CA..UUG..G.G.GGU...G...CAGauaUA.UUC..CA.GCAA..AU.GCUGC..CGC.UAUG......................UGAUC.GCCUGUAU.AUGACC..GAGAU...CC..A......C...AGG...G....AU...U.U.C...G...A...G...GGU...G...AUAC...................GU.AUUUUCCG..G......A.A.U..U...U..G....A...C...AG.G....AAU.G...A..UU
   NC_007618.1       AG..U.-.UU.Gc.gG.C..GG.A....A.GG....-.-.-C....G.....G.G..G...U.GG..AC.......GAA....AUCU..................................................GUGUGAU..CG..GCG..G.G.GGA...C...AAA...UC.UAU..GU.ACAG..GC.CAUGC..CGC.UUGC......................CGAUC.GCUUACAC.CUGACG..CGCGU...UC..U......C...UCU...G....UC...A.U.C...G...A...A...GGC...G...AUAC...................AU.AUUUUCCU..G......A.A.A..U...C..A....A...U...CC.G....CAG.G...A..CU
   NC_007626.1       GGccC.G.GC.U...G.G..CG.C....C.CG....A.-.--....-.....-.G..G...C.GG..CG.......GAG....CUGA..................................................UGGUGAU..CG..GCG..G.C.AAC...A...GCC...UG.UUC..GC.CGAG..GC.CCUGC..CCG.GAGC......................CCGGC.GCCUGUAU.CUGACC..GAGAU...CG..C......C...CGC...G....CC...U.A.U...G...A...G...GGC...G...ACAC...................GA.UGUUUCCC..G......C.C.U..U...C..G....A...G...CG.C....GGC.C...U..CU
   NC_007645.1       -U..C.U.GG.C...G.G..CG.C....G.GG....A.G.C-....-.....A.G..G...C.GG..AA.......GAA....GUCA..................................................UGCUGAU..UG..GCG..G.C.-GC...G...GAA..uUG.UAC..CG.GCAA..GG.GCUGG..CUG.CCGC......................GCAAC.GCGUUUAU.CUGACG..GAAGU...AA..A......G...ACU...U....CC...G.U.G...C...A...G...GGU...G...AUGC...................GU.UCUUCCCU..G......A.G.C..U...U..G....A...C...CU.C....GCU.G...A..CU
   NC_007712.1       GC..U.G.GC.G...G.C..GG.C....G.--....-.G.GU....G.....A.G..G...U.GG..UU.......GAG....GUGA..................................................UGGUGAU..CG..GCG..G.C.GGU...A...AGG...UC.UAC..GA.GACG..UU.UCUGC..CCC.AGGC......................CGGGC.GGCUCUAU.CUGACC..CAUAU...CG..A......C...GCU...G....AA...G.U.G...G...A...C...GGU...G...ACAC...................CU.GGUUUCCC..G......A.C.U..A...U..G....A...A...CC.G....GAU.G...A..AU
   NC_007951.1       GC..U.C.AA.G...-.C..UC.G....C.CGcgcaG.G.AU....C.....A.G..G...C.GC..CC.......GAA....GCGU..................................................UUCUGAU..CG..GCG..G.C.GCG...C...AGU...UG.UAU..GU.GGAA..GG.CUUGC..GGC.AAGC......................GGACA.AGCUCAUC.AUCACC..GAAAU...UU..C......C...GCC...G....AC...U.U.C...G...A...A...GGC...G...ACGC...................CA.CGUUCCCC..G......A.A.C..U...C..G....A...C...GA.A....ACC.G...A..GU
   NC_007963.1       --..U.G.GC.C...A.G..GC.C....A.UC....A.U.CG....A.....U.G..G...C.GU..CGa.....gGAC....AUCU..................................................GCGUGAU..CG..GGG..G.C.GGC...G...AAA...UC.UUU..GC.CGAG..GC.CUUGC..CCU.GCGC......................CACGC.GGCUCUAC.UUGACC..GAGGU...CG..A......C...AUC...G....AG...G.U.C...G...A...G...GGC...G...AUGC...................CU.GGUUUCCC..G......C.G.U..U...C..G....A...C...GC.C....CGC.G...A..GU
   NC_007964.1       GA..U.G.CG.C..uG.C..GG.-....-.CG....U.U.CG....G.....U.C..A...C.--..-U.......GAG....AUCG..................................................CGGUGAU..CG..GCG..G.A.GCG...G...AGA...UU.UAU..GC.CGCG..UC.GAUGC..CGG.UGGC......................GGAUC.GUCUCGAG.GUGACG..GAAGU...UC..A......C...GCC...G....GG...G.U.C...G...A...U...GGC...G...AUGC...................CG.UUUUUCCG..G......C.G.A..U...C..G....A...U...CC.G....UCG.G...U..UU
   NC_008212.1       AU..C.G.AA.A...A.A..UG.C....-.-U....C.G.CG....A.....G.C..GuggU.GU..GG.......GAA....CUGU..................................................CUAUGUUgcAG..GCG..G.U.GGC...G...GCG...UG.UAC..GA.ACAG..UU.UCUCC..CCC.UUGC......................AGAUC.GACUUCGU.CUGACU..GAACU...AC..A......U...GAU...G....AA...U.A.U...G...A...G...GGA...G...ACAC...................AA.AAUUCCCG..U......C.G.U..G...G..G....A...U...GA.C....ACC.G...U..GU
   NC_008260.1       GA..A.C.GU.G...G.C..CU.U....C.--....-.A.UU....G.....A.A..G...G.CC..AGg....aaGAA....GCGG..................................................UGAUCAU..GG..GCG..-.G.UGC...G..gAAA...UC.UAC..GC.GCUG..GC.GCUGG..CGC.AGAC......................CCAGC.GGCUCUAC.CUCACU..GAGGU...AC..A......U...GCU...G....AG...G.U.C...G...A...U...GGG...G...AUAC...................UU.UUUUUCCG..G......A.G.U..A...C..G....A...C...AA.G....GGC.G...A..AU
   NC_008610.1       AU..C.U.GG.U..uA.A..UG.G....C.--....-.G.CU....A.....A.U..G...A.AC..UA.......A--....----..................................................UGAUUAU..GG..GUG..G.U.GUA...U...CUU...UU.UAC..GA.ACAA..AU.GAUAG..AUA.AGGU......................UGAUA.GAAUCUAU.AUCACA..GAAGU...UA..A......U...GGU...A....AA...U.U.U...G...A...U...GGU...G...AUAC...................GU.ACUUUCCA..G......A.A.U..U...U..G....A...C...CG.C....ACU.A...A..AU
   NC_008700.1       AG..C.C.GU.G...G.C..GC.U....G.GC....C.G.GU....G.....A.U..U...G.UG..AG.......GAG....UUGG..................................................UGGUUAU..CG..GUG..G.U.GGG...C...AAC...UC.UAU..CA.AACC..CU.GAUUU..CCC.AGGC......................AGAUA.AGCUAUAU.UUAACC..GAGAU...AG..C......C...UUG...G....AG...G.U.U...G...A...G...GGG...G...AUAC...................CC.ACUUCCCA..G......C.C.U..G...G..G....A...U...GA.U....GGC.A...G..CU
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   NZ_CP012264.1     AG..C.-.GU.U...G.C.aGG.C....C.UG....C.G.GU....G.....A.U..G...C.CG..AA.......GAA....GUGA..................................................UGGUGAU..UG..GCG..G.C.GGU...C...GCG...UU.UAC..GA.GCAG..UU.CCUGC..CGC.GCGC......................GCAGC.GUCUUUAU.CUCACC..CAUAU...UG..A......U...GCG...G....AA...G.U.G...G...A...A...GGC...G...ACAC...................CC.AUUUCCCG..G......A.U.U..A...C..G....A...G...CC.G....GAC.G...A..GU
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   NZ_CP012871.1     GG..C.G.AU.C...G.C..CG.C....C.UG....U.G.GC....G.....G.U..G...C.GG..AA.......GAG....AUUA..................................................UGGUCAU..CG..GCG..G.C.GGC...C...GCG...UA.UAC..GA.GCAG..UU.CCUGC..CGA.AAGC......................GCAUA.AGCUCUAU.CUGACC..CAUAU...CG..A......U...GCC...G....AA...G.U.G...G...A...A...GGG...G...AUAC...................GC.AUUUUCCU..G......A.C.U..A...C..G....A...U...CC.G....GAC.G...A..GU
   NZ_CP012898.1     --..-.-.--.G...A.A..GA.U....G.CU....A.-.UU....G.....A.U..G...C.UU..CA.......AAA....----aa...................cgauucac...............aacccuUUAUUAU..UG..GUG..G.G.GGC...G...AAA...UU.UAC..AA.ACAA..GC.UAUGA..CUG.UUGC......................UAACA.AAAUUGAA.UUAACU..AGAGU...CC..A......U...AAU...G....AU...U.U.U...G...A...A...GCC...G...AUAC...................CU.UUUUUCCA..G......A.A.A..U...A..G....A...C...CC.U....UCU.G...C..AU
   NZ_CP013106.1     GC..A.U.GC.A...A.C..GA.-....U.C-....-.G.AU....G.....C.C..G...C.UG..AU.......GAG....AUCA..................................................UUGUCAU..GG..GGG..G.C.GCG...C...AGA...UC.UAC..GC.ACAG..GC.AUUGC..CGA.UUUC......................GCAGC.GCCUCUAU.CUCACC..GAGGU...CG..A......U...AUC...G....AG...A.U.C...G...A...G...GGU...G...ACGC...................AC.AUUUCCCG..G......A.A.U..U...C..G....A...C...CU.C....AGC.C...A..GU
   NZ_CP013107.1     GG..C.G.GA.G...C.U..CG.G....C.--....-.-.--....G.....C.C..G...A.--..-G.......GAA....AUCU..................................................GCAUCAU..CG..GCG..G.C.GGG...G...AGA...UC.UAC..CG.GCAG..UC.GAUCG..ACC.UUGC......................CGACG.UGCUGCAC.GUGACC..GAGGU...CA..A......A...GCU...G....AA...G.U.G...G...A...G...GGC...G...ACAC...................GC.GCUUUCCGccG......A.U.C..G...A..U....C...C...CC.A....AUC.C...U..UC
   NZ_CP013118.1     AG..C.-.--.-...G.G..AA.A....C.CC....U.A.G-....-.....A.U..G...A.AA..AA.......GAG....CUGA..................................................UGGUGGU..AG..GUG..G.U.GGC...A...AAA...UA.UAC..GAaGCAG..CC.CUUCC..-CU.AUGC......................AGACA.GACUUUAU.UUAACG..CAGAU...AA..A......U...GCA...G....AA...A.U.C...G...A...U...GGU...G...AUAC...................UU.UCUUCCCA..U......C.C.U..A...C..A....A...U...UU.A....AAU.G...A..CU
   NZ_CP013187.1     AG..C.A.UU.A...G.C..GC.U....A.CU....G.G.AA....G.....G.A..A...C.AU..CA.......GAA....GUCA..................................................UGAUAAU..AG..GCG..G.U.GGU...A...AUA...UU.UAC..GG.UCAG..UU.UUUAA..CAU.UGGC......................CGAAC.GUUUGUAU.UUAACC..UUUAU...CG..A......U...UUA...G....AU...G.U.U...G...A...A...GGU...G...AUAC...................UC.AGUUCCCU..G......A.U.U..AcucA..A....A...G...GA.U....AAU.A...A..CU
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   NZ_CP013500.1     GG..C.U.GG.C...AcA..CG.A....A.--....-.A.CC....G.....G.C..G...C.CG..GC.......GAG....AUCU..................................................GCAUUAU..CG..GCG..G.C.GGA...C...AAG...UC.UAU..GC.CCAG..GC.GAUCG..GCC.UUGC......................CGACC.GGAUGUGC.AUCACG..CAUGU...CG..A......A...GCC...G....AC...C.U.C...G...A...A...GGG...G...AUGC...................GG.CGUUUCCG..G......C.G.A..U...C..G....A...U...CC.C....GCC.A...U..CU
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   NZ_CP013940.1     AG..C.-.GU.U...A.C.aGG.C....C.UG....C.G.GC....G.....A.U..G...C.CG..AA.......GAG....GUAA..................................................UGGUGAU..UG..GCG..G.U.GGG...C...GCG...UU.UAC..GA.GCAG..UU.CCUGC..CGC.GCGC......................GCAGC.GUCUUUAU.CUCACC..CAUAU...CG..A......U...GCG...G....AA...G.U.G...G...A...A...GGC...G...ACAC...................CC.AUUUUCCG..G......A.U.U..A...C..G....A...G...CC.G....GAC.G...A..GU
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   NZ_CP014136.1     GG..C.U.UU.G...G.C..GG.C....G.GC....C.G.AU....A.....G.C..G...C.CG..AA.......GAA....GUGA..................................................UGGUGAU..GG..GCG..G.A.GGG...A...GCA...UU.UAU..AC.CCAG..UU.CCUGG..CCC.GGGC......................CAAUC.GUAUGUAC.CUGACG..CAUAU...UG..A......U...GCC...G....AG...A.U.U...G...G...C...GGU...G...AUAC...................CC.AUUUCCCC..G......A.C.U..A...U..G....A...G...CC.A....GAU.G...A..AU
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   NZ_CP014864.1     GC..C.G.GU.C...G.G..CU.U...uG.GA....G.U.CG....G.....G.C..G...C.CG..CG.......GAG....AUUA..................................................UGGUGAU..CG..GCG..G.C.GGG...C...AAA...UU.UAC..CG.GCAG..GC.CAUGC..CCC.GGGC......................CGUGC.GCCUCUAC.AUCACU..CAUGU...GG..A......C...GCA...G....AG...G.U.G...G...A...A...GGG...G...AUGC...................UU.UUUUUCCA..G......C.G.-..-...-..C....U...G...GG.U....GAC.U...G..CU
   NZ_CP014870.1     AG..C.A.UG.G...G.C..GA.A....C.GA....G.C.AG....G.....G.C..G...U.CG..AU.......GAG....GUGA..................................................UGUUGAU..UG..GCG..G.G.GCG...C...AGU...UG.UAU..GC.GCAG..GG.AUUGG..CGC.AGGC......................GGAUC.GGUUGUAU.UUGACG..CGUGU...-G..G......C...GUU...G....AG..uC.C.G...G...A...A...GGG...G...AUGC...................GU.GGUUUCCG..G......A.G.G..U...U..G....A...U...UC.G....GGG.C...A..GU
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   NZ_CP025682.1     CG..A.U.CG.C...G.G..CG.G....C.CG....G.-.--....-.....-.C..A...C.CG..GC.......ACG....AUCU..................................................GCGUGAU..CG..GCG..G.U.GCC...G...AAC...UG.UAU..CG.GCAC..CU.GCUCG..AUC.GUGC......................CGACC.GUCUGGUG.CUGACC..GAGGU...CG..C......C...GCG...G....AG...G.U.C...G...C...G...GGA...G...AUGC...................CC.ACUUUCCG..G......A.C.U..U...C..G....A...C...CG.C....GAG.A...C..CU
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   NZ_CP026309.1     GG..C.-.--.-...-.-..-G.G....C.GG....A.G.CG....G.....A.U..G...G.GC..GU......cGAG....----.......................acg....................guguACGUCGU..CG..GCG..G.C.GCG...A...CCG...UC.UAC..GA.GCAG..UU.CCUCC..CCC.GCGC......................GAGUC.GACUCGUC.CUCACC..GAACU...CG..A......C...GAG...G....CG...C.A.C...G...A...G...GGA...G...ACAC...................CG.CGUUUCCG..G......C.G.U..A...C..G....A...C...--.-....GAG.G...A..GC
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   NZ_CP027850.1     GG..C.C.GC.G...G.-..--.-....A.CG....A.C.--....G.....G.C..G...U.CG..AC.......GAG....GUCU..................................................GCGUGAU..CG..GCG..G.C.CGG...G...CCC...UG.UUC..GA.GCUG..GC.CCUGC..CCA.AGGC......................CAAGC.GCCUCUAC.CUGACC..GAGGU...CG..C......G...GCC...G....AG...G.U.C...G...A...A...GGC...G...ACGU...................CC.AUUUCCCG..G......C.C.U..U...C..G....A...C...GA.A....AGC.G...C..CU
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   NZ_CP028271.1     GC..U.G.--.-...G.C..GG.C....A.GC....G.G.GU....G.....A.G..G...U.GG..AA.......GAG....GUUA..................................................UGGUAAU..CG..GUG..G.C.GGA...C...GUA...UC.UAU..GA.ACAG..AU.GCUGG..AUC.GCGC......................CGAUC.GUCUUUAC.CUGACG..CACAU...CG..A......U...GCG...G....AA...G.U.A...G...A...A...GGC...G...AUAC...................CC.AUUUUCCU..G......A.C.U..A...U..G....A...A...CC.G....GAU.G...A..GU
   NZ_CP028897.1     --..-.-.--.-...-.G..GA.G....-.CA....U.U.UU....U.....C.C..GggcA.AG..AG.......GAG....CUGA..................................................UGAUCAU..CG..GGG..G.U.AAU...G...CUC...UC.UAU..CA.ACGC..UU.UCUUC..CCC.UGGC......................GGAUC.GGCUUUAU.AUCACA..GAGGU...UG..A......U...UGC...U....CG...G.U.U...G...A...A...GGU...G...AUAC...................CU.GCUUCCCC..G......A.G.U..U...U..G....A...C...UC.U....GGU.G...A..UU
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   NZ_CP029347.1     AG..G.C.UU.U...A.G..AA.A....G.--....-.G.GU....G.....C.A..A...A.GC..CAag...auGAA....GUGA..................................................UGGUGAU..UG..GAG..G.G.GGG...C...GUA...UU.UAU..GA.GUUA..UU.CCUGC..CGC.UGGC......................UGAGC.GUUUGUAC.AUCACA..GAUAU...UG..A......U...CUG...G....AC...G.U.U...A...U...C...GGA...G...AUAC...................CU.ACUUCCCC..G......A.U.U..A...U..C....A...G...GC.C....GAA.G...-..CU
   NZ_CP029451.1     CG..U.C.GA.A...C.U..CG.G....C.--....-.-.--....G.....U.C..G...-.--..AC.......GAG....AUCU..................................................GCAUCAU..CG..GCG..G.G.GGC...G...AAA...UU.UAC..CG.GCAG..UC.GAUCG..ACC.UCGC......................CGACG.UGCUGCAC.GUGACC..GAGGU...GC..G......G...GCG...G....AG...G.U.G...G...A...C...GGC...G...ACAC...................AC.GCUUUCCG..C......-.-.-..-...C..G....A...U...CG.A....UCC.G...G..CG
   NZ_CP029463.1     AG..C.C.AU.A...U.C..AG.U....C.UG....U.C.CU....C.....A.A..G...A.AG..AA.......AAU....UUAU..................................................UCAUCAU..CG..GGG..G.A.GGC...G...AAA...UC.UAC..AA.ACAA..UC.UAUGU..UAG.UGGC......................UACUA.AAAUAGAA.UUAACC..AGAGU...UC..A......U...ACA...G....AA...G.U.G...G...A...A...GCC...G...AUAC...................UU.UUUUCCCG..G......A.A.A..U...C..A....A...A...UC.G....GAA.G...A..UU
   NZ_CP029495.1     UG..G.C.UG.G...C.G..GG.G....U.GG....A.G.GA....G.....G.C..G...U.G-..--.......---....----c.....................c...........................---UGAU..CG..GCG..G.C.GCC...G...ACC...UG.UAC..CG.CCAG..GC.GCUGG..CGA.UGGC......................CGAUC.GGCUGUGC.CUGACG..GAAAU...CG..G......C...CGC...G....AU...U.A.C...G...A...C...GGC...G...ACGC...................CC.ACUUCCCG..G......U.C.U..U...U..U....C...G...CC.C....GAG.G...A..AU
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   NZ_CP039690.1     CG..C.U.GC.G...U.U..CG.G....G.--....-.-.--....G.....G.C..G...A.CC..GA.......G--....AUCG..................................................UCGUCAU..GG..GCG..G.C.GCC...G...AGA...UU.UAU..GC.CCAG..GC.CAUGG..CUU.UCGC......................CGACC.GGCUGUUG.AUUACC..CAUGU...CG..A......A...GCA...G....CG...C.C.C...G...A...C...GGC...G...AUAC...................UU.UCUUCCCG..U......-.-.-..-...U..G....A...U...CG.A....UUU.A...U..CG
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   NZ_CP071070.1     CG..C.G.CU.G...G.U..UG.C....C.UG....C.G.GC....G.....A.U..G...C.GC..CA.......GAG....AUUA..................................................UGGUGAU..UG..GCG..G.U.GGA...C...GCG...UG.UAU..GA.GCAG..UU.CCUGC..CGA.AAGC......................GGACA.AGCUGUAC.CUGACG..CAUAU...CG..A......C...GCG...G....AG...G.U.G...G...A...A...GGG...G...ACAC...................GC.ACUUCCCG..G......A.U.U..A...C..G....A...U...CC.G....GAC.G...A..CU
   NZ_CP071320.1     GC..U.G.GC.C...G.C..CG.C....G.--....-.G.GU....G.....A.G..G...U.GG..AA.......GAA....GUAA..................................................UGGUGAU..CG..GCG..G.U.GGG...C...GCA...UC.UAU..AC.CCAG..UU.GCUGC..CGC.GCGC......................CGAUC.GCCUGUAC.CUGACA..CACAU...CG..A......C...GCC...G....AA...G.U.C...G...G...C...GGC...G...AUAC...................UC.ACUUCCCG..G......A.U.U..A...C..G....A...G...CC.G....GAC.G...A..GU
   NZ_CP071325.1     UG..C.C.CA.G...U.C..UG.C....G.GC....C.G.GU....G.....A.U..G...U.GG..AA.......GAG....CUGA..................................................UGAUCAU..CG..GGG..G.C.GGC...A...GUA...UU.UAU..GA.AGCG..UG.CCUGC..CGU.UGGC......................CGACC.GACUGUAC.CUGACG..UUUAU...UG..A......C...CUG...A....CG...G.U.U...G...C...A...GGG...G...ACAC...................CU.GCUUCCCG..G......C.C.U..G...G..G....Au.gA...CA.C....CUG.G...-..CA
   NZ_CP071326.1     CG..-.G.UU.A...U.U..GA.C....C.UG....U.C.GA....-.....A.U..G...A.AU..UU.......GAU....GUGU..................................................GGGUAAU..UG..GCG..G.A.AGC...G...AGA...UU.UAC..GC.UCAA..UU.CCUGC..CUU.AUGC......................UUCGC.AAAUAUAU.CUGACA..GAGGU...GG..A......U...GCG...G....AG...C.U.U...G...A...U...UGC...G...AUAC...................GU.UUUUCCCU..Ug...cuU.U.G..A...C..A....A...G...UC.U...cUAU.G...C..AG
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   NZ_CP071454.1     GG..C.U.GG.C...G.C..U-.-....C.CA....A.A.CC....G.....G.U..G...C.CG..AC.......GAA....AUCU..................................................GCAUCAU..CG..GCG..G.G.GGG...C...AGA...UC.UAU..GC.CCAG..GC.AAUCG..ACC.UCGC......................CGAUC.GACUGUGC.AUCACC..CAUGU...CG..A......G...GCC...G....AU...U.U.G...G...A...U...GGC...G...ACGC...................GU.CGUUUCCG..G......C.G.A..U...C..G....A...U...CC.C....GCC.A...C..CU
   NZ_CP071462.1     AA..U.C.GU.C...-.-..--.-....-.-A....C.G.AC....G.....A.C..G...C.--..-C.......GAG....CGGA..................................................UCUUCGU..UG..CGG..G.C.GGCgca-..aCCG...UC.UAC..GA.GCAG..UU.CCUGC..CCG.CGCU......................GGAUC.GACUCGUC.GUGACG..GAAGU...CC..A......C...CGC...G....AA...C.C.C...G...A...C...GGC...G...ACAC...................GC.GGUUCCCC..G......A.C.U..G...G..A....G...C...CG.C....GAG.G...A..CU
   NZ_CP071487.1     GC..C.A.AA.A...A.U..UU.U....-.--....-.G.CU....A.....A.U..A...G.CG..AU.......GAA....AUAA..................................................UGAUUAU..CG..GCG..G.U.GGU...G...AGU...UA.UUC..AA.ACAA..GC.AAUGC..CUU.UUGC......................CGAUA.AACUUUAU.CUUACU..GAAAU...UC..A......A...GCC...A....AU...A.U.A...G...A...G...GGC...G...AUAC...................UU.UUUU---U..G......A.G.U..U...U..G....A...U...GA.A....ACU.C...A..GU
   NZ_CP071502.1     --..C.A.AA.C...A.G..UU.G....G.-U....G.G.GU....G.....A.C..U...G.UG..AG.......GAG....CUGG..................................................UGGUCAU..AG..GUG..G.U.GGU...C...AGC...UG.UAC..CA.A-AG.cCU.GCUUA..CAC.AGGC......................UGAUA.GGCUAUAU.UUAACU..GAGAU...UG..C......C...UUG...G....AU...G.U.G...G...A...U...GGU...G...ACAC...................CC.AUUUCCCG..G......C.C.U..G...G..G....A...U...GA.C....GGU.U...C..CU
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   NZ_CP071517.1     -C..A.-.--.G...G.C..CG.C....C.--....-.-.--....-.....-.G..G...U.GU..GCc.....gGCG....CUUU..................................................GCGUGAU..CG..GUG..G.U.GGC...G...AGG...UC.UAU..GC.GCAG..UG.CCUGC..AGC.AGGC......................AACGC.AGAUGCAC.CUGACC..CUGGU...CG..A......C...ACC...G....UG...G.U.C...G...A...G...GGUgccG...ACGC...................GU.UCUUCCCC..G......-.-.-..-...U..G....A...U...C-.-....GAU.G...A..GG
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   NZ_CP071586.1     AU..G.G.GC.G...A.A..GG.A....G.CA....G.G.G-....-.....-.C..G...U.CG..AU.......GAG....CUGA..................................................UGCUGAU..CG..GUG..G.U.GCG...C...AGU...UG.UAU..GC.GCAA..GG.GCUGG..CGC.AGGC......................GGAUC.GUCUGUAU.CUGACU..C-GCG...UG..G......C...GUU...G....AG..cC.C.G...G...A...G...GGU...G...AUGC...................GU.GGUUUCCG..G......A.G.U..U...U..G....A...U...UU.G....AAC.C...A..GU
   NZ_CP071604.1     AA..-.G.GC.U...G.G..CG.C...gC.CA....A.A.CG....G.....G.C..G...C.CG..GC.......GAG....AUCU..................................................GCAUCAU..CG..GCG..G.C.GGC...C...AGA...UC.UAC..GC.GCAG..GC.GAUCA..AUC.UUGC......................GGACC.GAAUGUGC.AUCACC..CAUGU...CG..A......G...GCC...G....AU...C.U.C...G...A...C...GGC...G...ACGC...................GU.CGUUUCCG..G......C.G.A..U...C..G....A...U...CC.C....GAU.C...U..CU
   NZ_CP071612.1     AA..G.A.CU.G...G.C..GC.U....C.CA....A.A.CC....G.....G.C..G...C.CG..GA.......GAA....AUCU..................................................GCAUUAU..CG..GCG..G.G.GGG...C...AGA...UC.UAU..GC.CCAG..GC.AAUCG..ACC.UUGC......................CGAUC.GUCUGUGC.AUCACU..CACGU...CG..A......G...GCC...G....AC...C.U.U...G...A...C...GGC...G...ACGC...................GU.UCUUUCCG..G......C.G.A..U...C..G....A...U...CC.G....AAU.A...C..CU
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   NZ_LN999833.1     --..-.G.GC.A...G.U..GG.C....C.--....-.G.AU....A.....A.G..G...C.GG..CA.......GAG....GUAA..................................................UGGUAAU..CG..GGG..G.A.GGU...A...AGG...UC.UAC..GA.GACG..UU.UUUCC..CCC.AAGC......................AGAAC.GACUUUAU.UUGACC..CAUAU...CA..A......C...GCC...G....AA...G.U.A...A...A...C...GGU...G...ACAC...................UU.GGUUUCCU..A......A.C.U..A...C..G....A...U...CC.A....GAU.G...A..AU
   NZ_LR027382.1     AU..G.G.CG.U..uG.U..UC.G....-.-C....C.G.CC....G.....A.C..G...-.--..AG.......GAG....AUCU..................................................UCAUCAU..CG..GCG..G.G.GCG...C...AGA...UC.UAU..GC.CGAG..GC.GCUGC..CCC.GGGC......................CGGAC.GUUUCUAC.CUGACG..CGGGU...CU..U......U...CAC...G....AC...U.A.U...G...A...G...GGC...G...AUAC...................GU.GUUUUCCG..G......C.G.U..G...G..G....A...C...GA.G....GCG.G...A..AU
   NZ_LR134167.1     GG..A.U.UU.U...G.U..CA.A....A.GA....U.U.UU....C.....C.C..G...-.--..--.......-AA....AUAA..................................................UGCUUAU..CG..GCG..G.C.GGU...G...AGU...UA.UUU..AA.ACAA..UA.UCUUC..CCA.UUGC......................AGAUA.AACUCUAU.UUGACU..GAAAU...UC..A......A...GCA...G....AA...A.U.U...G...A...C...GGC...G...AUAC...................GU.UUUUUCCA..C......A.A.A..U...U..G....A...U...UG.G....ACA.G...A..AU
   NZ_LR134201.1     GG..C.G.AU.C...A.A..AG.C....C.UG....U.G.GC....G.....A.U..G...C.CG..AA.......GAG....AUUA..................................................UGGUGAU..UG..GCG..G.A.GGA...C...GCG...UA.UAC..GA.GCAG..UU.CCUGC..CGA.AGGC......................GCAGC.GUCUGUAC.CUGACC..CAUAU...UG..A......U...GCG...G....AA...G.U.A...G...A...A...GGG...G...AUAC...................CC.AUUUCCCG..G......A.U.U..A...C..G....A...U...CC.G....GAU.G...A..GU
   NZ_LR134302.1     CG..C.U.AU.C...G.C..CG.C....G.UG....C.G.GU....G.....A.U..G...U.GC..AG.......GAA....GCCU..................................................UCGUGAU..UG..GCG..-.G.CGC...G...CAG..aUC.UAU..GC.GCAA..GC.CUUGC..CGA.UGGC......................GCAAC.GGGUGCUG.GCGACG..GAAGU...GC..A......C...GCC...G....AU...G.U.G...G...A...G...GGC...G...ACGC...................GU.UCUUUCCG.uU......G.U.U..G...C..C....-...G...UC.G....UUU.C...A..GU
   NZ_LR134338.1     AA..G.-.--.-...-.A..AG.U....G.CU....C.G.CU....A.....-.U..G...G.--..GC.......GAU....GUCA..................................................UUAUCUU..UG..GCG..G.C.UCG...G...AAA...UU.UAU..CG.CCAG..UU.UCUCG..AUG.UCGU......................UGAUC.GACUGUAC.AUUACG..GAGAU...CG..A......U...UUG...G....AA...A.C.A...G...A...G...GGA...G...AUAC...................GU.UUUUCCCA..G......C.A.U..G...G..G....A...U...CG.U....GAU.G...C..UU
   NZ_LR134376.1     GC..U.G.CU.G...G.C..GA.G....C.GG....C.G.AG....G.....C.G..G...U.GG..AU.......GAG....CUGA..................................................UGGUGAU..CG..GCG..G.U.GGC...C...AUC...UC.UAU..GG.CCAA..CU.GUUGC..CCA.GGGC......................GGAUC.GCCUCUAC.CUGACC..CGGAU...CG..A......G...CUG...G....CG...G.U.C...C...C...G...GGG...G...ACAC...................CC.GUUUCCCC..G......C.C.U..U...C..G....A...C...GA.G....GGG.G...A..GU
   NZ_LR134383.1     GG..C.C.UU.U...G.A..GU.U....A.AC....G.A.GU....G.....G.C..G...C.AC..CU.......GAA....GUAA..................................................UGAUCAU..UG..GCG..G.A.GCA...A...CCG...UA.UAC..CA.ACAA..AC.CUUAG..CCC.UCGC......................UUCUA.GACUGUAU.UUGACG..GUGAU...CC..A......U...CAC...C....AG...U.U.U...A...A...A...GCC...G...AUGU...................UU.UUUUUCCG..G......A.A.C..U...G..-....-...G...AC.A....GCA.G...-..CU
   NZ_LR134384.1     G-..-.G.CU.U...U.A..GA.C....A.UG....U.G.CCa..aA.....C.A..G...A.AG..AA.......GAA....GUGU..................................................UCGUUAU..CG..GCG..G.A.GAA...C...AGG...UG.UAU..AA.AGAA..GC.CAUUA..CGC.AGGC......................CGAUA.GGCUUUAU.CUGACA..GAGAU...AG..A......U...GCC...C....CG...G.C.A...G...AgcaG...GCC...G...AUGC...................UU.AUUUCCCU..G......C.C.U..A...U..A....A...C...UC.C....UGG.C...A..UU
   NZ_LR134485.1     AG..C.C.AU.U...G.C..GG.C....C.UG....C.G.GC....G.....A.U..G...A.GC..CA.......GAA....AUUA..................................................UGGUGAU..UG..GCG..G.U.GGG...C...GUG...UG.UAU..GA.GCAG..UU.CCUGC..CGA.AAGC......................GCAGA.AGCUGUAU.CUGACG..CACAU...UG..A......U...GCG...G....AA...G.U.C...G...A...A...GGG...G...AUAC...................GC.AUUUCCCG..G......A.C.U..A...C..G....A...A...CC.G....GAU.G...A..CU
   NZ_LR134494.1     GC..U.G.GC.C...G.C..UG.C....C.--....-.G.GG....G.....A.U..G...U.GG..AA.......GAA....GUGA..................................................UGGUGAU..CG..GCG..G.U.GGG...C...GUA...UU.UAC..AG.CCAA..UU.CCUGG..CAC.GCGC......................CAAUC.GCAUGUAU.CUGACG..CAUAU...CG..A......U...GCC...G....AA...G.U.C...G...G...U...GGC...G...ACGC...................CC.AUUUCCCU..G......A.C.U..A...U..G....A...G...CC.G....GAU.G...A..AU
   NZ_LR134510.1     AA..U.C.GA.A...U.U..AG.U....A.--....-.A.AU....G.....A.A..G...C.GC..AA.......GAA....AUCA..................................................UGAUUAU..CG..GUG..G.U.GGA...G...AAG...UA.UUU..AA.ACAA..UA.UUUCA..AUA.AAAU......................UGAUC.GUCUUUAU.CUUACG..GAAAU...CC..A......A...ACA...U....CA...U.U.A...G...A...A...GGU...G...AUGC...................GU.UUUUCCCU..G......A.A.U..U...U..U....C...G...CU.U....UCC.G...A..CU
   NZ_LR134531.1     GG..C.G.AU.U...G.A..AG.C....C.GC....U.G.GU....C.....A.G..G...U.UG..AU.......GAA....GUGA..................................................UGAUUAU..UG..GCG..G.U.GGA...C...GGG...UU.UAU..CA.GCAG..GC.UUUAU..CUU.GUGC......................UGACC.GACUGUAU.CUAACC..CACAU...UG..A......U...GCC...G....AA...U.U.G...C...A...G...GGG...G...AUAC...................CC.AUUUUCCU..G......A.C.U..A...U..C....A...G...CA.A....UAC.G...C..AU
   NZ_LR215729.2     -C..U.G.GG.C...G.C.gUG.A....A.--....-.A.AG....G.....G.C..G...U.CG..AU.......GAG....CUGA..................................................UGCUGAU..UG..GCG..-.G.UGC..gC...AGU...UG.UAU..GA.GCAA..GC.CUUAA..AGC.AGGC......................CGAUC.GCCUUUAC.CUGACG..CGCGU...GC..A......-...GCU...U....AG..cC.C.C...G...A...A...GGC...G...AUGC...................AU.GGUUCCCG..C......A.A.G..U...G..G....A...U...CA.G....GCC.G...A..CU
   NZ_LR215974.1     AA..A.G.UU.U...G.C..AA.A....A.AA....G.A.UA....G.....A.U..G...-.--..AA.......GAG....AUUU..................................................UUAUCAU..UG..GUG..G.C.GGU...A...CCA...UU.UAU..GA.CCAG..AC.AAUGG..AAA.UUGU......................UGAUA.AGCUGGAA.GUGACU..CUGGU...AA..A......G...GCA...A....AC...C.U.U...G...A...A...GCU...G...AUAC...................CU.AUUUUCCU..G......A.A.A..U...U..G....A...U...UC.U....AAA.A...U..AU
   NZ_LR217713.1     --..-.-.AU.U...G.A..GU.C...uA.AG....U.G.AG....U.....U.A..G...A.AG..AG.......GAG....CUGA..................................................UGGUAAU..UG..GUG..G.U.GGC...A...GUA...UU.UAU..CA.ACAA..AU.GUUAC..CAA.AAGC......................AGAAC.GGUUAUAU.CUCACU..CAUAU...UG..A......U...ACA...A....AA...G.U.A...G...A...A...GGA...G...AUAU...................UU.AUUUUCCG..G......A.C.U..A...U..A....A...U...AU.C....AGA.A...A..AU
   NZ_LR699007.1     AC..U.G.GC.G...A.U..UG.C....A.CA....G.A.AA....G.....A.A..A...C.AG..ACg....gcGAG....AUCA..................................................UGGUGAU..GG..GCG..G.C.GGU...A...AAG...UC.UAC..GG.ACAA..UU.CCUGC..CGC.UGGC......................GGAUC.GUUUAUAU.CUGACA..CACGU...UG..A......U...GCG...G....AA...G.U.C...A...G...C...GGG...G...AUAC...................UU.ACUUCCCU..G......A.C.U..A...U..G....A...G...CC.G....GAU.G...A..GU
   NZ_LR699553.1     AG..C.U.CG.C..cG.C..UC.A....G.--....-.G.AU....C.....A.G..G...C.GC..CC.......GAA....GCGU..................................................UUCUGAU..CG..GCG..G.C.GCG...C...AGU...UG.UAU..GU.GGAA..GG.CUUGC..AGC.AGGC......................GGACA.AGCUCAUC.AUCACC..GAAAU...UU..C......C...GCC...G....AC...U.U.C...G...A...A...GGC...G...ACGC...................UA.CGUUCCCC..G......A.A.C..U...C..G....A...C...GA.A....ACG.G...A..GU
   NZ_LR890047.1     GG..C.U.AU.U...C.U..UG.C....A.GC....G.G.UA....G.....A.G..A...A.GG..AA.......GAG....AUAC..................................................UAGUUAU..UG..GUG..G.U.GGC...A...GUG...UU.UAU..CU.UCAG..UU.UAUGC..CGU.UUGC......................UAAAA.AUAUGUAU.UUGACU..CAUAU...UG..A......U...UUG...G....AA...G.U.A...C...A...C...GGG...G...AUAC...................AC.ACUUCCCA..A......G.A.U..A...U..G....A...G...AU.A....GAU.U...U..AU
   NZ_LR990739.1     --..-.-.--.-...-.-..--.G....A.UG...cG.U.CC....G.....G.C..G...C.GC..AG.......GAG....UUGU..................................................GCGUCAU..CG..GUG..G.C.GGC...G...AGG...UG.UAU..CG.GCUG..AC.GAUGG..AGC.UGGC......................GGAUG.UUCUGGCC.GUCACC..GAGGU...CG..C......C...ACG...A....UC...G.U.U...G...Ag.cA...GGC..cG...ACAC...................CC.ACUUUCCG..C......C.G.A..U...C..G....A...C...CC.G....GCC.G...U..GU
   NZ_LS483250.1     UG..U.G.GU.G...G.C..GG.C....G.--....-.G.GU....G.....A.U..G...U.GG..AA.......GAG....UUAA..................................................UGAUCAU..UG..GUG..G.U.GCG...A...CGA...UU.UAU..AA.CCAG..UA.CUUGG..CUG.CUGC......................GGAUC.GUUUGUAU.UUGACG..CAUAU...UG..A......A...UUA...A....CG...A.U.C...G...A...A...GGG...G...AUAC...................UU.GGUUCCCU..G......A.U.U..A...U..G....A...G...CA.G....UAC.C...A..UU
   NZ_LS483377.1     --..-.-.--.G...C.C.gAA.G....G.CG....A.-.-G....G.....G.C..G...C.CA..GC.......GAG....CUGU..................................................GCAUCAU..CG..GCG..G.C.GGC...G...AGA...UC.UUC..CA.CCAG..CU.GCUGG..ACC.AGGC......................CAGUG.ACCUGUAC.CUGACC..UGGGU...GG..A......U...GCC...G....AA...A.U.C...C...C...C...GCC...G...AUAC...................CC.AUUUCCCC..G......A.A.G..U...C..G....A...C...AU.G....CAG.G...A..CU
   NZ_LS483422.1     AU..U.G.GC.U...G.C..GG.C....A.CA....A.G.CU....A.....U.U..G..aA.GG..CAau..gauGAA....GUUA..................................................UGGUUAU..CG..GUG..G.U.GGU...A...AAG...UU.UAU..CA.GCAG..UU.CCUAC..CAC.UCGC......................GAACA.AGCUUUAU.UUGACA..CAUGU...AG..A......U...GCA...G....AA...G.U.U...A...U...U...GGU...G...AUAC...................UC.AUUUCCCU..A......U.U.U..A...U..G....A...G...CC.G....GAU.G...A..GU
   NZ_LS483429.1     GC..G.-.--.-...G.U..CA.A....U.UU....U.G.UC....A.....G.A..GauuU.UG..AU.......GAA....AUUA..................................................UGUUGAU..UG..GUG..G.G.GGA...G...AGU...UA.UUC..AA.ACAA..UA.UUUAC..CCA.AAGC......................AGAUA.AGUUAUAC.CUUACU..CAAAU...UC..A......A...ACA...G....AA...C.U.A...G...A...U...GGC...G...AUAC...................UU.UUUUCCCU..C......A.A.U..U...G..A....A...U...UG.G....GAG.G...A..GU
   NZ_LS483458.1     GC..G.-.--.-...G.U..CG.A....U.UU....U.A.UC....A.....G.A..GauuU.UG..AU.......GAA....AUUA..................................................UGUUGAU..UG..GUG..G.G.GGA...G...AGU...UA.UUC..AA.ACAA..UA.UUUGC..CAC.AAGC......................GGACA.AGUUAUAC.CUUACU..CAAAU...UC..A......G...GCA...G....AA...C.U.A...G...A...U...GGU...G...AUAC...................UU.UUUUCCCU..C......A.A.U..U...G..A....A...U...UG.G....GAU.G...A..GU
   NZ_LS483470.1     GU..U.U.GU.C...G.A..AG.C....G.GG....U.A.G-....-.....-.C..G...U.AG..AU.......GAA....GUGA..................................................UGGUGAU..AG..GCG..G.A.GGU...A...ACG...UU.UAU..CA.ACAG..GC.GCUGG..AAA.GAGC......................CGAUA.GACUCUAC.CUGACG..CAUAU...UG..A......A...GCG...U....CG...C.C.U...G...C...C...GGU...G...AUAC...................CC.AUUUCCCU..G......A.C.U..A...C..C....A...G...CG.C....UAC.A...G..CU
   NZ_LS999205.1     GG..A.G.UG.G...G.C..AC.U....G.-G....A.G.CA....G.....-.G..G...C.GC..CAg.....cGAG....CUGA..................................................UGCUGAU..CG..GUG..G.C.GCA...C...AGC...UU.UAC..AG.CCAG..GG.GCUGG..AGC.AGGC......................AGAUC.GCCUGUAC.CUGACG..CGGGU...AG..C......C...UUG...A....GC...C.C.G...G...A...A...GGC...G...AUGC...................CU.GGUUUCCG..G......A.A.U..U...C..G....A...U...GA.G....CAA.C...A..GU
   NZ_LT605585.1     AG..U.-.UU.Gc.gG.C..GG.A....A.GG....-.-.-C....G.....G.G..G...U.GG..AC.......GAA....AUCU..................................................GUGUGAU..CG..GCG..G.G.GGA...C...AAA...UC.UAU..GU.GCAG..GC.CAUGC..CGC.UUGC......................CGAUC.GCUUACAC.CUGACG..CGCGU...UC..U......C...GCU...G....UC...G.U.C...G...A...A...GGC...G...AUAC...................AU.AUUUUCCU..G......A.A.A..U...C..A....A...U...CC.G....CAG.G...A..CU
   NZ_LT615367.1     AG..C.G.CU.G...G.C..AG.C....C.GC....A.G.GC....G.....A.U..G...C.UG..AA.......GAA....GUGA..................................................UGGUGAU..UG..GCG..G.A.GGC...C...GGG...UG.UAU..CA.GCAG..AU.GUUGC..CGC.GCGC......................UACCC.GGCUCUAU.CUGACC..CAUAU...CG..A......U...GCU...G....AC...G.U.U...G...A...A...GGC...G...AUAC...................CC.AUUUCCCU..G......A.C.U..A...U..G....A...G...CC.U....GAU.G...A..GU
   NZ_LT855380.1     GC..A.G.UG.G...G.C..-G.C....A.CG....A.G.CA....G....gG.C..G...U.CG..AU.......GAA....GUCA..................................................UGCUGAU..AG..GUG..G.U.GCU...C...AGU...UG.UAC..AC.CCAG..GG.CCUGG..CUC.AGGC......................GGAUC.GUUUGUAU.CUGACG..CGC-G...UG..G......C...GUU...G....AG..uC.C.G...G...A...A...GGC...G...AUGC...................CU.GGUUUCCC..G......A.G.U..U...C..G....A...U...CA.G....GUG.C...A..GU
   NZ_LT897836.1     AC..U.A.AU.C...G.C..GG.C....A.--....-.G.GU....C.....C.A..G...U.GG..CU.......GAA....GUGA..................................................UGGUGAU..CG..GCG..G.A.UGU...A...AAG...UU.UAC..GA.AACU..UU.UUUAC..CAC.AGUC......................CAGGC.GGCUUUAU.CUUACC..CAUAU...UA..A......U...ACA...A....AA...G.U.A...G...A...U...GGC...G...AUAC...................CU.GGUUUCCC..G......A.C.U..A...U..G....A...G...CC.G....AAU.A...A..UU
   NZ_LT906448.1     GU..C.G.AU.U...U.U..GU.C....A.-A....-.-.-A....G.....A.U..U...C.AC..CU.......GAA....AUUA..................................................UGCUGAU..UG..GCG..G.C.GGA...G...AGU...UA.UUU..AA.ACAA..UA.UUUAU..CGA.AAGC......................GGAUA.AACUGUAU.UUAACC..GAAAU...CC..A......A...ACA...G....AA...U.U.A...G...A...A...GGC...G...AUAC...................UU.AUUUCCCU..G......A.A.A..U...U..A....U...G...UG.G....GAU.G...A..AU
   NZ_LT906463.1     GA..-.A.CG.C...C.U..UA.G....C.AG....A.G.UU....G....aG.C..G...A.AU..CCc....cuGAA....GUGA..................................................UGCUUAU..CG..GUG..G.U.GGU...G...AGU...UG.UUU..AA.ACAA..UA.UUUAG..CGC.AGGC......................AGAUA.AACUCUAU.UUCACA..CAAAU...UC..A......G...GCU...G....AA...A.U.C...G...A...C...GGC...G...AUAC...................UU.UUUUUCCG..G......A.A.A..U...C..C....A...U...UG.G....GCA.G...A..UU
   NZ_LT906479.1     GC..U.G.GC.C...G.C..GG.C....C.--....-.G.GC....G.....A.G..G...U.GG..AA.......GAA....GUGA..................................................UGGUGAU..GG..GCG..G.C.GGG...C...GCA...UU.UAC..AC.CCAG..UU.CCUGG..CGC.GCGC......................CAACC.GCAUGUAC.CUGACG..CAUAU...CG..A......C...GCC...G....AA...G.U.C...G...G...C...GGC...G...ACAC...................GC.AUUUCCCG..G......A.U.U..A...U..G....A...G...CC.G....GAU.G...A..AU
   NZ_LT960614.1     U-..-.G.CU.C...U.C..AG.G....A.--....-.-.GC....G.....G.G..G...C.GG..AC.......GAG....GUGA..................................................UGGUGAU..CG..GCG..G.C.GGC...A...GCA...UC.UAC..GC.AAGG..CU.GAUGC..CGC.AUGC......................CGACA.GGCUCUAU.GUGACG..CAUGU...CG..C......U...GCC...G....AG...C.C.G...G...A...G...GGC...G...ACAC...................GC.AUUUUCCC..C......A.C.A..U...C..G....A...U...CU.G....ACG.A...U..GU
   NZ_OU907312.1     --..-.-.UG.U...G.A..AG.C....G.GC....U.A.GU....U.....C.U..G...C.CG..AG.......GAG....CUGA..................................................UGGUCAU..CG..GCG..G.C.GGC...A...GAC...UG.UAC..CA.ACAG..CU.UCUGU..CAC.AGGC......................UAAUC.GCCUCUAU.GUUACU..CUGAU...UG..A......A...GCC...A....CG...C.U.A...C...C...A...GGC...G...ACGU...................UU.ACUUUCCA..G......A.C.U..A...U..A....C...U...CC.C....AGU.C...G..CU


   Structure         ((....(.((.(.....(..((.(......((....(.(.((............(..(...(.((..((....................................................................)))))........(((....(.(((.......(((...((.........((((..((..((((................................))))..)))))).....))))..)..))...)).........)...))..............(.(.(...(............................................)).))....)).........).).)..)...)..)........)...)).)....))).)......))


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folA



Position: 278-402, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R G G A R U U R U A U Y G G Y G G G R R U U A Y A R Y Y U Y G C R A Y R Y U Y A Y U A C R R U A Y R Y G U G A G G G A Y R C Y U U Y C C G Y R A R R U 5'