dnaX-ybaB-recR-htpG



Position: 2637-2791, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.C) Reactivity: nanC Position: 37 (position.label in template: 37.A) Reactivity: 0.5A Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.C) Reactivity: 0.5C Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.A) Reactivity: 0.5A Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0.5C Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.C) Reactivity: 1C Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.A) Reactivity: 1A Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.A) Reactivity: 0.5A Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.A) Reactivity: 1A Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.A) Reactivity: 0.5A Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.A) Reactivity: 1A Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.C) Reactivity: 1C Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.C) Reactivity: 0C Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.A) Reactivity: 1A Position: 119 (position.label in template: 119.C) Reactivity: 0C Position: 120 (position.label in template: 120.A) Reactivity: 0A Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.C) Reactivity: 0C Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.C) Reactivity: 0.5C Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.C) Reactivity: 0C Position: 130 (position.label in template: 130.A) Reactivity: 0A Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.A) Reactivity: 0A Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.A) Reactivity: 0A Position: 136 (position.label in template: 136.A) Reactivity: 0A Position: 137 (position.label in template: 137.A) Reactivity: 1A Position: 138 (position.label in template: 138.A) Reactivity: 1A Position: 139 (position.label in template: 139.A) Reactivity: 0.5A Position: 140 (position.label in template: 140.A) Reactivity: 0A Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.C) Reactivity: 0C Position: 143 (position.label in template: 143.A) Reactivity: 0A Position: 144 (position.label in template: 144.C) Reactivity: 0C Position: 145 (position.label in template: 145.U) Reactivity: nanU Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.A) Reactivity: 1A Position: 148 (position.label in template: 148.A) Reactivity: 1A Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.A) Reactivity: 0A Position: 153 (position.label in template: 153.U) Reactivity: nanU Position: 154 (position.label in template: 154.C) Reactivity: 0.5C Position: 155 (position.label in template: 155.C) Reactivity: 0C Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.C) Reactivity: 0C Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.C) Reactivity: 0C Position: 160 (position.label in template: 160.C) Reactivity: nanC Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.C) Reactivity: nanC Position: 163 (position.label in template: 163.C) Reactivity: nanC Position: 164 (position.label in template: 164.A) Reactivity: nanA Position: 165 (position.label in template: 165.A) Reactivity: nanA Position: 166 (position.label in template: 166.C) Reactivity: nanC Position: 167 (position.label in template: 167.C) Reactivity: nanC Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.C) Reactivity: nanC Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.U) Reactivity: nanU Position: 175 (position.label in template: 175.U) Reactivity: nanU Position: 176 (position.label in template: 176.G) Reactivity: nanG Position: 177 (position.label in template: 177.A) Reactivity: nanA Position: 178 (position.label in template: 178.A) Reactivity: nanA Position: 179 (position.label in template: 179.G) Reactivity: nanG Position: 180 (position.label in template: 180.G) Reactivity: nanG Position: 181 (position.label in template: 181.U) Reactivity: nanU Position: 182 (position.label in template: 182.G) Reactivity: nanG Position: 183 (position.label in template: 183.A) Reactivity: nanA Position: 184 (position.label in template: 184.A) Reactivity: nanA Position: 185 (position.label in template: 185.G) Reactivity: nanG Position: 186 (position.label in template: 186.C) Reactivity: nanC Position: 187 (position.label in template: 187.U) Reactivity: nanU Position: 188 (position.label in template: 188.A) Reactivity: nanA Position: 189 (position.label in template: 189.C) Reactivity: nanC Position: 190 (position.label in template: 190.C) Reactivity: nanC Position: 191 (position.label in template: 191.G) Reactivity: nanG Position: 192 (position.label in template: 192.C) Reactivity: nanC Position: 193 (position.label in template: 193.U) Reactivity: nanU Position: 194 (position.label in template: 194.A) Reactivity: nanA Position: 195 (position.label in template: 195.A) Reactivity: nanA Position: 196 (position.label in template: 196.3')3' 10 20 30 50 100 150


dnaX-ybaB-recR-htpG



Position: 2637-2791, Conformation: #1







Retained alignments:


   NC_002977.6       -..-.-.-..-....-..-..-.-..--..-...-.-.-.-..-..-.-.CC...G..---..-.--.--.-aggugcucgcgaucagc...............cgcuccaccggcuauaag..-.-.-.-..G..G.C.uU.G..U..UU..UU..U..GU.A.C..U....C.AAU..G..G..A.....C....G.C.CU.GU.CG...CCGCUC...GAUGG.C.AUCGGUCCCGAAGAGC...............................................................................U...GG.G...G...CU.G........G....A.....C..GU..C..C.U..G.....G...A.G........C..A..A...C....G..G.C.......U...G....A...A..G...G....A.....C....G...A......U...G...G.....U....G.U.C.GC.....G.....G..AA....................................C.U.GAU...CCUGG...CG..A..CCA.ACA....C.C.ACCGUCG.AG.GGCGAAGC.G.ACC...............GCU
   NC_003317.1       U..C.U.C..U....G..G..G.C..GC..U...G.G.A.G..C..GgG.CA...G..ACA..C.AA.UG.-a................................................a..-.-.U.G..U..G.C..G.C..U..AU..CA..U..GU.A.U..U....G.GGU..G..G..C.....C....G.C.CU.GU.CA...CCGCUC...GAUGG.C.AUCGGCCCGGACGAUC...............................................................................U...CA.A...C...AU.C........A....A.....G..GG..G..C.U..G.....G...U.G........G..A..G...C....G..G.G.......U...U....G...C..A...A....G.....C....G...G......C...G...C.....C....A.U.C.AA.....G.....G..AA....................................G.U.GAU...CCUCG...CG..G..UCA.ACG....C.C.ACUGUCG.AA.GGCCAGAC.G.ACC...............GCC
   NC_003910.7       C..G.U.U..A....U..U..G.C..UA..U...U.G.A.A..C..A.A.AC...A..GGU..G.AG.UU.C....................................................U.U.U.G..G..G.A..A.G..U..AU..UU..U..GU.C.U..U....G.AUG..G..G..G.....C....A.U.UU.AU.CU...CCUAUU...GAUGG.C.AUAGGACCAGAUGAUC...............................................................................U...AG.G...C...UU.A........G....A.....U..AU..A..U.U..A.....G...CgA........A..G..C...A....A..U.U.......U...G....C...U..A...C....A.....G....G...U......C...A...G.....U....U.U.A.G-.....U.....G..AA....................................G.U.UAU...UUUGG...CA..A..CUA.AUC....C.G.ACGGUGG.AA.GGGGAGGC.A.ACA...............GCA
   NC_004556.1       C..G.G.C..U....G..-..G.C..GA..U...U.G.A.G..-..-.-.--...-..---..-.--.--.-caagccacugg...........................cuaccguggacu..-.-.-.-..-..-.-..-.A..U..AU..UU..U..AU.U.U..U....G.CAG..G..G..G.....C....G.C.CU.GU.CC...CCGCUG...GAUGG.G.AUCGGCCCUCAUGAAC...............................................................................U...UG.G...G...UU.G........G....A.....C..CA..U..U.U..A.....G...G.A........C..A..A...C....G..U.C.......U...U....G...C..U...G....C.....A....G...G......U...G...A.....G....G.U.G.AC.....G.....G..AG....................................C.U.CAU...CAUUG...CG..A..CUA.AUG....C.G.ACGGUGG.AG.GGUGAGAC.G.ACA...............GCG
   NC_004578.1       U..G.U.C..U....A..U..G.C..GG..U...G.G.A.G..C..A.G.AC...C..GGU..-.--.UA.U....................................................C.G.C.G..G..U.C..G.U..U..AU..UU..C..GU.G.C..U....C.AAG..G..G..C.....C....A.C.CU.GU.CG...CCCCUC...GACGG.C.CUGGGCCCGGAGGCCA...............................................................................U...CG.G...C...AU.U........C....C.....G..CA..A..C.U..G.....A...U.G........G..A..G...C....G..C.Auc..agcC...A....G...C..A...G....G.....C....C...-......-...A...C.....C....U.U.C.AC.....G.....G..AA....................................G.U.GAU...UCUGG...CC..A..CCA.ACC....C.G.ACCGUGG.AG.GGCGAGGC.C.ACC...............GCG
   NC_004603.1       U..A.U.C..G....C..A..G.C..AG..U...U.G.A.A..G..C.G.AC...G..GGU..C.AA.UA.C....................................................U.C.C.G..G..U.C..G.A..U..AC..UU..U..GU.G.C..U....U.AUG..G..G..G.....C....A.U.UU.GU.CU...CCGCUU...GAUGG.C.AUCGGUCCAAGUGAUA...............................................................................U...UG.G...U...UU.A........G....A.....C..GU..G..C.U..U.....G...A.U........U..A..U...C....G..U.Cu.....aC...G....U...C..G...A....G.....G....U...G......-...-...A.....U....A.U.U.UC.....U.....G..AA....................................G.U.GAU...CCUUG...CA..A..CCA.ACC....C.A.ACGGUUG.AG.GGAGAAGC.U.ACU...............GCU
   NC_005126.1       U..A.U.U..C....A..U..G.C..UA..U...U.G.A.A..C..A.A.AC...C..GGG..C.AG.UU.U....................................................G.C.C.G..G..G.C..G.U..U..AC..UU..U..GU.A.U..U....G.AUG..G..G..G.....C....A.U.UU.AU.CC...CCAUUA...GAUGG.C.AUUGGUCCAAUGGAUA...............................................................................U...UG.G...U...UU.A........G....A.....U..CG..U..C.U..U.....G...A.G........G..A..U...C....G..U.C.......U...C....G...C..C...A....C.....G....G...A......A...G...A.....G....A.U.U.UC.....C.....G..AG....................................G.U.GAU...UCUGG...CG..A..CUA.AUC....C.G.ACAGUGG.AG.GGAGAGGC.C.ACU...............GCC
   NC_006300.1       U..A.U.U..C....A..G..G.C..GA..U...A.G.A.A..C..A.G.AC...C..GGG..C.AG.UU.U....................................................U.C.C.G..G..C.C..G.U..U..AU..UU..C..GU.A.U..U....G.AUG..G..G..G.....C....A.U.UU.GU.CG...CCUUUG...GACGG.U.AUCGGUCCGCGGGAAA...............................................................................U...CG.G...C...UU.A........G....A.....U..UU..A..U.U..A.....C...A.A........C..G..C...C....G..U.U.......U...-....A...C..A...A...cA.....A....G...A......A...C...A.....A....U.U.C.AA.....U.....G..AA....................................G.U.GAU...UCUUG...CU..A..CAA.AUC....C.A.ACGGUUG.AA.GGUGAUGC.C.ACC...............GCC
   NC_006512.1       C..G.U.A..U....U..A..G.C..CA..U...U.G.A.A..C..A.G.AC...C..UCU..C.AA.UU.U....................................................C.A.G.G..G..G.C..G.U..U..AU..UU..U..GU.G.C..U....G.AUG..G..G..G.....C....A.U.UU.GU.CU...CCGCUG...GAUGG.U.AUUGGGCCGGCGGACA...............................................................................U...UG.G...U...CU.G........G....A.....U..GA..G..C.U..G.....G...A.G........C..G..G...C....A..A.C.......U...G....-...C..A...G....A.....G...cG...A......G...C...C.....G....G.U.G.GA.....A.....G..AA....................................A.U.UGU...GCUGG...CG..A..CUA.ACC....C.G.ACUGUGG.AA.GGGGAUGC.U.ACC...............GCG
   NC_007204.1       U..G.U.C..A....U..G..G.C..GA..U...A.G.A.G..C..A.A.AC...U..GCA..G.GU.UA.C....................................................C.G.U.G..G..G.C..G.U..U..AU..UU..U..GU.G.U..U....G.GGU..G..G..U.....C....A.C.CU.GU.CA...CCGAUU...GACGG.A.AUUAGCGCGGAUGAU-uua.....................................................................aaua...U...UG.A...G...CA.-........A....C.....U..GG..U..C.U..G.....G...C.G........-..-..-...C....G..U.C.......A...A....G...C..A...A....G.....A....G...C......C...-...-.....U....G.U.U.GA.....G.....G..AG....................................U.U.GAU...AUUGG...CG..A..CCG.GCA....C.U.ACGGUCG.AA.GGGCAAAC.G.ACC...............GCG
   NC_007484.1       U..G.U.U..C....A..A..G.C..UA..U...U.G.A.G..C..A.A.GC...A..ACA..A.GC.UA.U....................................................U.C.U.G..G..U.A..G.A..U..AU..UU..C..GU.U.C..U....A.AUG..G..G..G.....C....A.C.CU.AU.CU...CCCCUU...GAUGG.C.GUAGGUCCCGAAGCAU...............................................................................U...GG.G...U...AU.G........G....A.....C..UU..G..C.U..G.....G...C.A........A..A..A...C....G.aU.U.......G...G....A...U..A...C....A.....G....A...U......C...A...A.....A....U.U.C.GC.....-.....G..AG....................................G.U.UAU...CCUUG...CC..A..CUA.AUC....U.A.ACCGUUG.AG.GGCGAAGC.A.ACC...............GCC
   NC_007645.1       C..G.U.G..C....U..G..G.C..GA..U...U.G.A.G..C..A.G.AC...A..UCG..G.AC.UA.U....................................................A.G.C.G..G..U.C..G.U..U..AC..UU..C..GU.G.C..U....G.AUG..G..G..G.....C....A.U.UU.GU.CG...CCGAUA...GACGG.C.AUUGGCCCUGAAGACA...............................................................................U...UG.G...C...GU.C........G....A.....U..AA..G..C.U..U.....A...A.G........C..A..G...C....U..A.U.......U...G....-...C..A...G...gA.....A....A...G......C...G...C.....C....G.U.C.AG.....C.....G..AG....................................C.U.GAU...CCUUG...CC..A..CCA.ACC....C.C.ACUGUGG.AG.GGCGAAGC.G.ACA...............GCG
   NC_007712.1       C..A.U.C..C....A..U..G.C..UA..U...U.G.A.G..C..A.G.AC...C..GGC..C.AG.UU.C....................................................G.C.C.G..G..G.A..G.C..U..AU..UU..U..GU.G.C..U....G.AUG..G..G..G.....C....A.C.CU.GU.CA...CCUCUC...GAUGG.U.AUCGGCCCGGACGAUA...............................................................................U...CG.G...U...CU.C........G....G.....G..CG..G..C.U..G.....C...A.G........G..A..G...C....G..G.C.......U...U....G...A..G...A....A.....C....G...A......A...A...G.....C....A.U.U.GA.....A.....G..AG....................................G.U.CAU...CCUGG...CC..A..CCA.ACC....C.G.ACGGUAG.AA.GGGGAGGC.G.ACC...............GCC
   NC_007912.1       U..G.U.A..A....U..C..G.C..CA..U...A.G.A.A..A..C.A.UC...G..GCG..G.UG.UU.C....................................................U.C.U.G..G..U.U..A.U..U..AU..UU..U..GU.C.-..U....U.GCU..G..G..G.....-....-.U.CG.GU.UA...UCACCUaucGACGG.C.AUAGGCCCCAAAGAAA...............................................................................U...AG.G...U...AU.G........G....A.....U..GU..A..U.U..G.....G...C.U........U..C..C...C....G..U.U.......U...U....G...C..C...G....A.....A....G...G......U...G...A.....A....A.U.A.GA.....A.....G..AA....................................G.U.GAU...UAUUG...CA..A..CCA.ACC....C.A.ACUAUUG.AA.GGCGAAGC.A.ACC...............GCG
   NC_007951.1       G..A.U.C.aU....G..C..-.-..--..U...C.G.A.G..C..A.G.AC...C..AUG..A.CC.UA.U....................................................C.G.C.G..G..U.C..U.U..U..AU..UU..C..GU.G.C..U....G.AUG..G..G..G.....C....G.C.CU.GA.GU...CCGCUC...GACGG.U.AUCGGUCCGAAGGA--gau.....................................................................ucau...U...UC.G...A...CC.G........G....C.....U..CG..U..C.C..G.....G...-.C........G..C..G...C....G..U.C.......G...G....A...C..G...G....C.....G....U...-......-...-...-.....G....G.U.C.AA.....G.....G..AA....................................G.U.GGU...GCUCG...CA..A..CCA.AUU....U.C.ACCAACG.AA.GGCGAAGC.G.ACC...............GCG
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   NZ_LS483443.1     U..A.U.U..C....U..U..G.C..GA..U...U.G.A.G..C..A.A.AC...C..GGG..C.AA.UU.U....................................................U.C.C.G..G..G.C..G.U..U..AU..UU..U..GU.G.C..U....U.AUG..G..G..G.....C....A.U.UU.GU.CG...CCAUUG...GACGG.C.AUUGGCCCACGAGAAA...............................................................................U...UG.G...C...UU.G........G....A.....U..UU..A..U.U..G.....C...A.A........A..A..A...C....G..U.U.......U...-....A...C..A...A....A....cA....G...A......A...U...C.....C....U.U.C.AA.....G.....G..AA....................................G.U.GAU...UUUGG...CG..A..CAA.AUC....C.C.ACUGUCG.AA.GGCGAUGC.C.ACG...............GCG
   NZ_LS483458.1     U..A.U.U..C....A..A..G.C..AA..U...U.G.A.G..C..A.A.AC...G..GGG..C.AA.UU.U....................................................U.C.A.G..G..A.C..G.U..U..AU..UU..U..GU.C.U..U....A.AUG..G..G..A.....C....A.C.UU.AU.CA...CCACUU...GAUGG.U.AUUGGUCCUCGUGAAA...............................................................................U...UG.G...U...UU.A........G....A.....U..UU..A..C.U..G.....C...A.A........A..A..A...C....G..U.U.......U...A....G...U..A...G....A.....A....G...A......A...U...C.....U....U.U.C.CA.....C.....G..AG....................................G.U.GAU...UCUUG...CA..A..CAA.ACC....C.A.ACAGUGG.AA.GGCGAUGC.A.ACA...............GCA
   NZ_LS483470.1     U..A.U.U..C....A..C..G.C..UA..U...U.G.A.A..C..A.A.AC...C..GGG..C.AG.UU.U....................................................G.C.C.G..G..U.C..G.C..U..AU..UU..U..GU.C.C..U....G.AUG..G..G..G.....C....A.U.CU.UU.CU...CCUCUG...GACGG.C.AUCGGGCCGAACGACA...............................................................................U...CG.G...A...CU.C........G....A.....U..CG..U..C.U..G.....G...A.A........G..A..G...C....G..U.U.......U...G....G...C..G...G....C.....A....G...A......G...A...C.....G....A.U.C.AA.....A.....G..AA....................................G.U.GAU...CCUUG...CC..A..CUA.ACC....C.G.ACCGUGG.AA.GGGGAUGC.G.ACU...............GCU
   NZ_LS999205.1     U..G.U.G..U....A..C..G.C..GG..U...G.G.A.G..C..A.G.AC...C..GGC..U.A-.-U.C....................................................G.C.-.G..G..G.C..G.C..U..AC..UU..C..GU.G.C..U....C.AAA..G..G..C.....C....A.C.CU.GU.CG...CCUCUG...GAUGG.C.CUGGGCCCGGAGGCCA...............................................................................U...CG.GcauU...CC.G........C....A.....G..UU..G..C.U..G.....G...C.G........C..G..U...Au..cG..A.G.......G...A....G...C..A...G....G.....G....C...A......G...-...-.....C....U.U.C.AG.....C.....G..AA....................................G.U.GAU...CCUGG...CC..A..CCA.ACC....C.G.ACGGUGG.AA.GGCGAAGC.C.ACU...............GCG
   NZ_LT605585.1     U..C.U.C..U....G..G..G.C..GC..U...G.G.A.G..C..GgG.CA...G..GCA..C.AA.UG.A....................................................-.A.U.G..U..G.C..G.C..U..AU..CA..U..GU.A.U..U....G.GGU..G..G..C.....C....G.C.UU.GU.CG...CCGCUC...GAUGG.C.AUCGGCCCGGACGAUC...............................................................................U...CA.A...C...AU.C........A....A.....G..GG..G..C.U..G.....G...U.G........G..A..G...C....G..G.G.......U...U....G...C..A...G....G.....C....G...G......C...G...C.....C....A.U.C.AA.....G.....G..AA....................................G.U.GAU...CCUCG...CG..G..UCA.ACG....C.C.ACUGUCG.AA.GGCCAGAC.G.ACC...............GCC
   NZ_LT615367.1     U..A.U.U..C....A..U..G.C..CA..U...U.G.A.G..C..A.A.AC...C..GGG..C.AG.UU.U....................................................G.C.C.G..G..G.C..G.C..U..AU..UU..U..GU.G.C..U....G.AUG..G..G..G.....C....A.U.CU.GU.CG...CCGCUG...GAUGG.C.AUCGGCCCCGCUGACA...............................................................................U...CG.G...G...CU.U........G....A.....U..CG..G..C.U..G.....G...A.A........G..A..G...C....G..U.C.......U...G....G...C..A...A....C.....G....G...A......A...A...C.....G....C.U.C.AG.....U.....G..AG....................................G.U.GAU...UCUGG...CG..A..CGA.ACC....C.C.ACGGUGG.AA.GGCGAUGC.G.ACG...............GCC
   NZ_LT853882.1     C..C.G.C..C....U..G..G.C..GA..U...C.G.AaC..A..U.G.CC...A..CCG..-.GG.UA.U....................................................C.G.C.G..G..G.C..U.A..U..AU..UU..U..AU.U.U..U....G.CAG..G..G..G.....C....G.U.UU.GU.CG...CCGCUG...GAUGG.C.AUCGGCCCGCGCGAAU...............................................................................U...GG.G...G...CU.G........G....A.....U..CG..G..C.U..C.....G...G.C........G..A..G...C....G..U.C.......U...G....G...C..C...G....C.....C....G...G......U...G...A.....G....G.U.U.AC.....C.....G..AA....................................A.U.GAU...CAUUG...CC..A..CCA.ACG....C.C.ACCGUGG.AA.GGCGAGGC.G.ACC...............GCG
   NZ_LT855380.1     U..G.U.C..U....A..C..G.C..CG..U...G.G.A.G..C..A.G.AC...C..GGC..U.A-.-U.C....................................................G.C.-.G..G..C.C..G.C..U..AU..UU..C..GU.G.C..U....C.AAG..G..G..C.....C....A.U.CU.CU.CG...CCACUC...GACGGuC.UUGGCCCCGA-GGCCA...............................................................................U...CG.G...C...AU.U........C....C.....A..CA..A..C.U..G.....A...U.G........G..A..G...C....G..U.Au....ugC...C....G...G..G...C....A.....G....G...G......C...A...C.....G....U.U.C.AC.....C.....G..AA....................................G.U.GAU...CCUGG...CG..A..CCA.ACC....C.C.ACCGUGG.AG.GGCGAGGC.C.ACU...............GCU
   NZ_LT906435.1     U..C.A.G..A....A..C..A.U..GC..U...U.G.A.G..C..A.G.AC...G..AUG..A.CG.UU.-....................................................C.A.A.G..G..G.-..G.C..U..GU..AU..U..UC.G.U..C....C.UGAugG..G..C.....C....A.U.CU.GU.CG...CCGCUC...GAUGG.C.GU--------------ggggcccggcgag.................................................auccauuucgagca...-...--.-...-...--.-........-....A.....C..UG..A..U.U..C.....G...C.C........G..C..G...C....C..A.C.......C...G....A...C..G...G....C.....G....U...-......-...-...-.....G....G.U.C.AA.....G.....G..AA....................................G.U.GGU...GCUCG...CC..A..CCA.ACU....U.C.ACCAACG.AA.GGCGAAGC.C.ACC...............GCC
   NZ_LT906448.1     U..A.U.U..C....A..A..G.C..UA..U...U.G.A.G..C..A.A.AC...U..GGG..C.AA.UU.U....................................................U.C.A.G..G..A.C..G.U..U..AU..UU..U..GU.U.U..U....A.AUG..G..G..G.....C....A.U.UU.AU.CA...CCGCUU...GAUGG.C.AUUGGUCCCAAAGAAA...............................................................................U...UG.G...C...UU.G........C....A.....U..UU..A..U.U..G.....C...A.A........C..A..A...C....G..C.C.......U...A....C...A..A...G....A.....A....G...A......A...A...G.....U....U.U.C.CA.....C.....G..AA....................................G.U.UAU...UUUAG...CA..A..CUA.ACC....C.A.ACAGUUG.AA.GGUGAUGC.U.ACA...............GCC
   NZ_LT906463.1     U..A.U.U..C....A..A..G.C..CA..U...C.G.A.G..C..A.A.AC...C..GGC..C.AA.UU.C....................................................U.C.C.G..G..G.C..G.U..U..AC..UU..U..GU.G.C..U....A.AUG..G..G..A.....C....A.U.UU.GU.CC...CCCUUA...GAUGG.U.AUUGGCCCGAAGGAAA...............................................................................U...UG.G...U...UU.G........G....A.....U..UU..A..U.U..G.....C...A.A........A..A..A...C....G..U.C.......U...U....A...A..U...G....A.....A....G...A......A...U...C.....C....U.U.C.CA.....U.....G..AA....................................G.U.GAU...UUUAG...CA..A..CCA.ACC....C.A.ACGGUGG.AA.GGGGAUGC.A.ACC...............GCC
   NZ_LT906479.1     U..A.U.U..C....A..C..G.C..CA..U...C.G.A.G..C..A.G.AC...C..GGC..C.AG.UU.C....................................................G.C.C.G..G..G.C..G.C..U..AC..UU..U..GU.G.C..U....G.AUG..G..G..C.....C....A.C.CU.GU.CG...CCGCUG...GACGG.C.AUCGGGCCAGGCGAUA...............................................................................U...CG.G...C...CU.G........G....A.....U..CG..G..C.U..G.....G...A.G........C..A..A...C....G..G.C.......U...G....G...A..A...A....A.....G....G...A......A...A...G.....C....A.U.U.AC.....C.....G..AA....................................G.U.GAU...CCUCG...CC..A..CCA.AUC....C.G.ACGGUGG.AA.GGGGAUGC.G.ACG...............GCC
   NZ_OU015430.1     C..G.G.C..U....-..C..G.C..GA..U...C.G.A.G..C..A.G.GC...A..ACC..G.GC.UA.U....................................................C.G.C.G..G..C.C..U.G..U..AC..UA..C..GU.G.C..U....G.CAG..G..G..G.....C....G.G.CU.GA.GC...CCGCUG...GACGG.C.AUCGGCCCCGGUGAGC...............................................................................U...UG.G...G...CU.G........G....A.....-..--..-..C.C..G.....G...C.U........C..G..G...C....G.cG.C.......G...C....C...U..G...G....C.....C....G...Agg.gcgA...G...G.....U....A.U.C.G-.....-.....G..AG....................................A.U.GAU...CAUCG...CG..A..CCA.ACC....C.C.ACGGUCG.AA.GGCGAGGC.C.ACC...............GCC
   NZ_OU015521.1     U..U.U.A..G....C..U..G.C..UA..U...A.G.A.G..C..A.A.GC...U..CAG..A.UC.UA.U....................................................U.C.A.G..G..C.C..G.U..U..AU..UU..U..GU.G.C..U....U.CAA..G..G..A.....U....G.C.CU.UU.CU...CCUUUA...GAUGG.A.AUAGGCCCUCAAGAAA...............................................................................U...UG.G...Ga.uUC.C........U....A.....U..UC..U..U.C..U.....U...A.A........U..C..G...A....U..U.A.......C...A....A...A..A...-....-.....U....G...A......A...U...U.....U....A.U.U.AC.....A.....G..AA....................................C.U.UAU...UAUUG...CU..A..CCA.ACG....C.A.ACCAUGG.AA.GGAAAAGC.C.ACA...............GCA
   NZ_OU594967.1     U..G.U.U..U....C..A..G.C..AA..U...U.G.A.G..C..A.G.AC...C..GCC..C.AA.UA.C....................................................A.G.U.G..G..A.C..U.U..U..AU..UU..U..GU.U.U..U....G.AUG..G..G..G.....C....A.C.UU.AU.CA...CCACUU...GACGG.A.AUUGGGCCAAAAGAAA...............................................................................U...UG.G...U...CU.U........G....A.....U..UU..A..C.U..A.....G...A.A........C..A..A...C....G..C.A.......U...G....C...A..A...C....A.....A....G...A......A...C...A.....G....A.U.U.CA.....G.....G..AA....................................C.U.CAU...UUUAG...CA..A..CCA.AUC....C.A.ACAGUGG.AA.GGUGAAGC.U.ACU...............GCU
   NZ_OU907312.1     U..A.U.U..C....A..G..G.C..UA..U...U.G.A.A..C..A.A.AC...U..GGG..C.AA.UA.U....................................................A.C.U.G..G..A.C..G.U..U..AC..UU..U..GU.A.U..U....G.AUG..G..G..U.....C....G.A.UU.GU.CG...CCGUUG...GAUGG.G.AUUGGGCCAAAAGAGA...............................................................................U...UG.G...G...CU.U........G....A.....U..CA..G..U.U..A.....G...A.G........C..A..G...U....G..C.U.......U...G...cG...U..A...G....U.....G....-...-......A...U...C.....C....G.C.C.AC.....A.....G..GA....................................G.U.UGA...UCUUA...GC..G..ACGaAUC....C.C.ACCGUAG.AG.GGGGAGGC.C.ACG...............GCU
   NZ_OU912926.1     C..U.U.G..C....U..C..A.U..GA..U...G.G.A.A..C..A.G.GC...G..CAG..U.GC.UA.U....................................................C.G.C.G..G..U.A..U.G..U..AU..UU..U..GU.G.C..U....G.AUG..G..G..A.....C....G.G.CU.UU.CU...CCACUG...GAUGG.C.AUUGG-----------cccgcgug............................................................aauugcac...-...--.-...-...CU.U........G....A.....A..CG..G..C.U..G.....G...U.-........U..A..G...-....-..G.C.......G...G....G...C..A...C....A.....G....G...A......A...A...A.....U....A.-.C.AU....gC.....G..AA....................................G.U.GAU...ACUCG...CC..A..CUA.AUU....U.C.ACCGUCG.AA.GGUGAUGC.C.ACU...............GCA


   Structure         (..(.(.(.......(..(..(.(..............(.(..(....(.((.......((...............................................................).)......)..).)..).)..).............)).).).......).))).....................(.((.((.((....(((((.....(((...((((((((((.....................................................................................)...)).)...)...))..........)....).....).........).)..)....................)..)..)...)....)............)...)....)...)..)...)....)........................................(.(.(.((....................................................).).))).....(((...((......((.(((..........)))))....)))))(((.....................)))


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dnaX-ybaB-recR-htpG



Position: 2637-2791, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y U G C R U G A R Y R R R C U Y G G C R U A Y U U Y G U Y U R R G G C R Y Y U U C C C Y U G A Y G G Y R U G G C C R R G A U G G U R R Y U R C G Y R R R R U R G A R U A U Y Y U G C A C Y A A Y Y C A C G U G A R G G G A R G C A C G C 5'