dnaK-dnaJ



Position: 1906-2020, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.A) Reactivity: nanA Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: 1C Position: 34 (position.label in template: 34.C) Reactivity: 0C Position: 35 (position.label in template: 35.C) Reactivity: 0C Position: 36 (position.label in template: 36.A) Reactivity: 0A Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.C) Reactivity: 0.5C Position: 39 (position.label in template: 39.A) Reactivity: 0.5A Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.C) Reactivity: 0.5C Position: 42 (position.label in template: 42.A) Reactivity: 0.5A Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.C) Reactivity: 1C Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.C) Reactivity: 0C Position: 50 (position.label in template: 50.C) Reactivity: 0.5C Position: 51 (position.label in template: 51.A) Reactivity: 1A Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.A) Reactivity: 0A Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.C) Reactivity: 1C Position: 57 (position.label in template: 57.A) Reactivity: 1A Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 1A Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.U) Reactivity: nanU Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.A) Reactivity: 1A Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.C) Reactivity: 0.5C Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.C) Reactivity: 0.5C Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.A) Reactivity: 1A Position: 85 (position.label in template: 85.C) Reactivity: 1C Position: 86 (position.label in template: 86.A) Reactivity: 1A Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.A) Reactivity: 1A Position: 93 (position.label in template: 93.A) Reactivity: 0.5A Position: 94 (position.label in template: 94.A) Reactivity: 1A Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.A) Reactivity: 0A Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.A) Reactivity: 0.5A Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.A) Reactivity: 1A Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.A) Reactivity: 1A Position: 112 (position.label in template: 112.C) Reactivity: 0.5C Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.C) Reactivity: 0.5C Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.A) Reactivity: 0.5A Position: 118 (position.label in template: 118.A) Reactivity: 1A Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.A) Reactivity: 1A Position: 124 (position.label in template: 124.A) Reactivity: nanA Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.A) Reactivity: nanA Position: 127 (position.label in template: 127.A) Reactivity: nanA Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.C) Reactivity: nanC Position: 131 (position.label in template: 131.A) Reactivity: nanA Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.A) Reactivity: nanA Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.A) Reactivity: nanA Position: 136 (position.label in template: 136.C) Reactivity: nanC Position: 137 (position.label in template: 137.A) Reactivity: nanA Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.A) Reactivity: nanA Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.A) Reactivity: nanA Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.U) Reactivity: nanU Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.C) Reactivity: nanC Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.A) Reactivity: nanA Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.3')3' 10 20 30 50 100 150


dnaK-dnaJ



Position: 1906-2020, Conformation: #1







Retained alignments:


   NC_002939.5       GAC.CCAA..GC...G..U.C.U..CAC...AAG...............................................................CU.G...G...C....A..G...A...G..GC.G......G...UCU....A...C...G...-.-...CC..A...AA-.GC...C.C..A.GGC......CGAAGgcgcccaa.............................ccaggcgggGAAGC...............G.....-GC..GG.G...U..G...A..AG......CC...U...C..U..........G...CCA......AG......GA......U.GAG.....................A...A......GG-----...-...--.............................................................-UUGUCGACGCCGACU..................UUG...A.........AGAG.G.U............CAAG......G...A...C.........G..A......C...A..A.....G......A...A.AUA..........A.CC
   NC_004193.1       UCA.ACAA..UU...G..U.C.U..GCA...AAG...............................................................CU.U...U...A....U..G...A...A..CA.A......G...UUC....A...A...C...A.-...--..A...GAA.GC...U.C..A.ACAa...gc-----..............................................-----..............uU....cUGG..CG.A...G..C...A..AG......--...-...G..U..........G...AAG......AA......AG......U.GGA.....................AaccA......GGACGAU...G...AU.............................................................GUUGUAGAUGCUGAUUa...............uuCUG...A.........AGUA.G.A............CGAU......G...A...U.........G..A......U...A..A.....A......A...A.AUA..........A.UA
   NC_004347.2       UAU.CGAA..GC...C..U.C.A..GCA...AAG...............................................................CU.G...A...U....G..G...A...A..AU.C......G...CUC....A...G...G...C.U...AA..A...---.GC...U.C..A.AAC......UCAAGgcgg.....................................cgcacAA---...............G....aAGG..UG.C...A..G...C..UA......--...-...-..A..........A...CAG......UC.....uAA......C.GCG.....................A...C......UGCCGAU...G...AC.............................................................GUUGUCGAUGCUGAAU..................UUG...A.........AGAA.G.U............GAAA......G...A...C.........G..A......C...A..A.....G......A...A.AUA..........A.CC
   NC_004578.1       AGC.CAAG..GU...C..G.-.-..---...AAG..........aacugucuaa................................gguuuccgcgc--.-...-...-....-..-...C...G..AU.C......G...CUC....A...G...A...A.G...AU..G...UAC.GC...C.G..A.GCA......GGCCGagaa......................................uccgGAAGC...............Ag...cA--..-G.C...C..A...A..GC......CG...G...C..U..........G...AAG......AA......AC......U.GCC.....................A...A......GGCUGAC...G...AC.............................................................GUCGUUGACGCCGAGU..................UUG...A.........AGAA.G.U............GAAA......G...A...C.........C..A......C...A..A.....G......U...A.AGC..........G.CA
   NC_004603.1       UAU.GACU..GC...U..G.C.U..CAA...AAA...............................................................CU.A...A...U....G..G...A...A..AU.C......G...CUC....A...A...C...A.A...CA..A...---.GC...U.C.aA.GCGca..ac-----a............................................a---GC..............aC....aAGG..UG.C...U..G...A..CG......CU...G...-..-..........G...CGC......AC......AG......U.-CA.....................A...A......AGAUGAC...G...AC.............................................................GUUGUAGAUGCGGAGU..................UCG...A.........AGAA.G.U............UAAA......G...A...C.........G..A......C...A..A.....G......A...A.AUA..........A.UC
   NC_005126.1       GGU.UCAG..GC...U..U.C.C..GCU...AAG...............................................................CU.G...U...U....G..G...A...A..AU.U......G...CUC....A...G...C...A.G...CA..G...---.GC...U.C..A.GGC......UGGUG..............................................CAACC...............-.....---..-G.C...A..G...A..UG......CU...G...G..U..........G...ACA......G-......--......U.GCGa..................agA...A......AGAUGAC...G...AU.............................................................GUUGUAGACGCUGAAU..................UCG...A.........AGAA.G.U............UAAA......G...A...U.........A..A......A...A..A.....A......U...A.AUA..........G.CC
   NC_006138.1       UAC.UGCC..GC...U..U.C.U..CAU...AAG...............................................................CU.U...G...C....C..G...A...G..CU.U......A...UGU....A...U...C...A.G...CA..A...GCA.UC...U.C..A.GGAa....a-----ccccug..................................gugaugGCGA-...............-.....UGC..UG.G...U..G...C..UG......CU...G...G..U..........G...CAA......AG......AA......A.AAA.....................G...A......UGAUGAU...G...AC.............................................................GUUGUUGAUGCAGACU..................ACG...A.........AGAA.G.U............GAA-......-...-...-.........-..-......-...-..-.....G......U...A.AUA..........C.UU
   NC_006512.1       GAU.GGAA..GC...A..U.C.A..CAG...AAA...............................................................CU.G...A...U....G..G...A...A..GC.A......G...CUC....A...G...C...A.G...CA..A...CAG.GC...A.C..A.ACA......AGGUGcu.........................................gaa-----...............-.....-GG..UG.C...A..G...C..UG......--...-...-..-..........G...CGG......UG......AA.....cA.GCAgucuu...........ccaaaG...C......GGAUGAU...G...AU.............................................................GUCGUUGAUGCUGAAU..................UUG...A.........AGAA.G.U............CAAA......G...A...Cg......acG..A......U...A..A.....G......A...A.GUA..........A.GC
   NC_006526.2       AGG.CCAG..GU...U..G.C.U..-AU...GAA...............................................................AU.U...A...G....G..U...C...A..GG.C......U...CUU...uA...U...G...A.G...CA..G...---.GA...U.C..A.G--......-----gcaaauaau............................gaacggcau---GA...............U....a--C..AC.C...U..G...A..AA......--...-...-..C..........G...GAA......--......AA......A.GCC.....................G...A......AGGUGAC...A...AU.............................................................GUUGUUGAUGCCGAAU..................UUC...A.........GGAA.A.U............AGAU......G...A...Cc......aaG..A......U...A..A.....G......A...A.AUA.........aU.CU
   NC_007292.1       AAU.UAAA..GU...U..U.C.U..GGA...AAA...............................................................UU.A...U...U....A..G...A...A..GC.C......A...GUC....A...A...A...A.A...CA..U...CAA.GA...A.C..A.A--u...cu-----..............................................-----...............-....aAGU..CU.C...-..-...A..GU......CU...U...C..U..........-...--A......AU......AG......U.ACU.....................-...-......-UCUGAU...-...--......................ccgaau...........................ggagaaGUAGUAGACGCAGAAU..................UUG...A.........AGAA.A.U............AAAG......A...A...C.........A..A......A...A..A.....A......U...A.AUA..........U.UU
   NC_007406.1       GGC.GCAG..GC...C..U.C.C..AUG...AAG...............................................................CU.A...G...G....C..G...A...G..GC.G......A...UGU....A...U...A...A.A...CA..A...CAG.GC...-.-..-.---......GGA--..............................................-----...............-.....---..AG.C...C..G...A..UG......CC...G...C..C..........A...AGG......AC......GC......C.GCG.....................A...A......GGACGAU...-...--.............................................................GUCGUCGAUGCGGAAU..................UUA...C.........CGAG.G.U............CGAC......G...A...C.........G..A......C...A..A.....G......A...A.GUC..........G.GC
   NC_007482.1       UGC.UGAA..AA...G..U.C.U..CAA...AAG...............................................................CU.U...A...U....G..G...A...A..AU.U......G...CAC....A...A...G...C.U...AA..A...---.GC...U.C..A.ACAa....g-----guucag..................................cugacgCAGGC...............-.....-GA..-G.C...A..A...C..AA......CA..aU...C..U..........G...CUA......--......--......A.GCA.....................-...-......AGAUGAC...G...AC.............................................................GUAGUUGAUGCAGAGU..................UUG...A.........AGAA.G.U............UAAA......G...A...C.........G..A......C...A..A.....G......U...A.AUU..........G.UU
   NC_007484.1       GAC.CGAU..GC...U..U.C.U..GCU...AAG...............................................................AU.G...G...C....C..G...A...A..CG.C......C...UUU....A...U...A...C.G...CA..A...CAA.GC...C.G..A.---......---A-..............................................-----...............-.....--G..AG.C...C..C...C..AG......CC...U...C..Aaaa...ggaaG...AAG......GC......AA......G.GCG.....................G...C......GGAAGAG...G...AU.............................................................GUUGUAGACGCUGAGU..................UUG...A.........GGAA.G.U............CAAA......G...A...A.........G..A......C...A..A.....A......A...A.UAA..........G.GC
   NC_007498.2       GGC.CACG..GC...U..U.C.G..CAC...AAA...............................................................CU.C...G...C....C..G...A...A..GC.G......G...UCU....A...C...A...A.G...CA..GaccCAG.GA...-.-..A.G--......-----ggg........................................cggAAGCC...............-.....-GC..UU.C...C..G...A..AG......CU...G...G..C..........G...AGC......AG......AG......C.GCC.....................G...G......CGACGAA...G...GC.............................................................GUGGUCGAUGCGGAAU..................UCG...A.........GGAA.G.U............CGAC......G...A...Ac......agA..A......C...A..A.....G......U...A.AAC..........U.UC
   NC_007614.1       GGC.CGAG..GC...U..U.C.G..CAU...A--...............................................................--.-...-...-....-..-...A...A..UU.G......G...CGG....A...A...A...A.G...AU..G...UAU.UC...A.C..A.GGG......GCAGGgucc.....................................acaggCCGGU...............C....cCGG..UG.A...G..G...A..AC......CU...U...C..C..........-...-GG......CC......AG......A.GCG.....................G...C......GG--GAC...-...--......................ugaaaaaccug.................ucgaaggagaaGUUGUCGAUGCGGAGU..................UCG...A.........GGAA.G.U............AAAA......A...A...C.........A..A......G...A..A.....G......U...A.AAUc........uG.CA
   NC_007626.1       GAU.GCAG..GC...C..U.C.C..AUG...AAG...............................................................CU.G...G...G....C..G...A...A..GC.C......A...UGU....A...C...A...A.G...--..-...---.GC...C.C..A.GGA......AGCG-gccggcggcgccgag...............gccgaggcugcggccg-----...............-....gUGG..UC.A...C..G...G..CG......GU...G...C..C..........U...CGG......GC......--......A.GCC.....................-...A......UGACGAC...A...AG.............................................................GUUGUCGACGCCGACU..................UCG...A.........AGAA.G.U............CGAC......G...G...C.........G..A......C...A..A.....G......A...A.G--..........G.GC
   NC_007712.1       UAU.UCAG..GU...G..U.C.C..GGC...AAA...............................................................CU.G...C...U....C..G...A...A..GU.G......G...CUC....A...G...C...A.G...CA..G...---.GC...U.C..A.GGC......GGCGG..............................................GCGAC...............G....gCGG..CG.C...G..G...A..CG......--...-...-..-..........G...UAGc....gCC......AA......G.GCG.....................-...-......-GACGAU...G...AU.............................................................GUUGUCGACGCCGAGU..................UUG...A.........AGAA.G.U............UAAA......G...A...U.........A..A......A...A..A.....A......U...A.AUC..........G.CC
   NC_007794.1       CAU.GAAG..AU...G..G.-.-..-GC...CAG...............................................................G-.-...-...-....-..-...C...C..AU.C......U...ACG....A...G...A...A.G...GA..G...CAG.GC..aA.C..U.GC-......-----ggc.......................................uucuC----...............-....cGGG..UG.C...C..G...A..AG......CC...-...C..C..........G...AAG......--......--......-.GCC.....................-...-......-GACGAU...G...AC.............................................................GUCGUCGACGCCGAGU..................UCU...C.........GGAA.G.U............CGAC......G...A...G.........A..A......C...A..A.....G......U...G.AUG..........U.UG
   NC_007912.1       AGC.UCUC..UU...G..C.U.C..-AA...AA-..........acug............................................uaugc--.-...-...A....G..A...G...C..AA.G......G...CGC....U...G...C...G.G...GU..G...CAG.GU...G.C..A.GC-......-----..............................................-AGG-...............-.....CGC..UG.C...U..G...A..UG......CC...G...C..C..........G...CAG......AU......CA......-.GCC.....................A..gC......AGACGAU...G...GC.............................................................GCAGUUGACGCUGAGU..................UUG...A.........AGAA.G.U............AAAA......G...A...A.........G..AcgacggC...A..A.....G......U...A.AGU.........uG.CU
   NC_007947.1       GAU.CGAG..GC...C..U.C.G..CAG...AAA...............................................................CU.U...G...G....U..G...A...A..AA.A......G...UCU....A...C...-...-.G...CU..G...CCG.GC...G.A..A.ACC......-GAAAgca........................................gcg-----...............-.....--C..CG.C...A..G...A..AC......CA...G...G..Cgag....ccaC...AGG......AA......AA......G.ACA.....................G...U......GGAUGCC...G...AA.............................................................GUGGUGGAUGCUGAGU..................UCG...A.........GGAA.G.U............CAAG......G...A...U.........G..A......C...A..A.....G......A...A.GUA..........A.UU
   NC_007954.1       GAU.CGAA..GC...C..U.C.U..GCU...AAG...............................................................CU.G...A...U....G..G...A...A..AU.C......G...CUC....A...A...G...C.U...AA..A...---.UC...U.C.aA.GCUc....a-----..............................................-AG--...............-....gCGG..CG.A...A..G...A..AG......CC...C...A..A..........G...CGA......AA......GA......U.GCCggu...............caaA...G......CAAUGAC...G...AC.............................................................GUAGUAGACGCUGAGU..................UCG...A.........AGAA.G.U............UAAA......G...A...C.........G..A......C...A..A.....G......A...A.GUA..........A.UU
   NC_007955.1       ---.--AG..GU...U..U.C.UgcUGC...AAU...............................................................GU.A...-...-....C..G...A...G..AA.A......G...CUC....A...G...A...A.A...GA..G...GCU.UC...-.-..U.GCU.....g-----gugcugaagc.........................uucugaagaug----C...............A.....-AG..UG.G...U..C...C..UU......CA...U...C..A..........A...CUG......GC......UC......U.GCA.....................U...C......AGAUGAU...G...AU.............................................................GUCGUUGAUGCGGACU..................AUG...A.........AGUU.G.U............UGAC......G...A...A.........G..A......C...A..A.....A......U...A.AAU..........A.CC
   NC_007964.1       GGC.GCAG..GC...G..U.C.C..AUG...AAG...............................................................CU.C...G...G....C..G...A...G..GC.C......A...UGU....A...C...A...A.G...CA..G...CAG.GC...U.G..A.---......-----..............................................-----...............-.....---..AG.C...C..G...A..UG......CG...G...C..C..........A...AGG......AC......GC......U.GCG.....................A...A......GGACGAU...-...--.............................................................GUCGUCGAUGCGGAGUu...............uaCCG...A.........GGUC.G.A............CGAC......G...A...C.........A..A......G...A..A.....C......A...A.GAA..........G.UC
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   NZ_LR134531.1     GGU.UGAA..GU...A..U.C.C..GGU...AAG...............................................................CU.G...A...U....G..G...A...A..AU.G......G...CAC....A...A...C...A.G...CA..G...CAC.GC...U.G..A.---......AAG--ugcu......................................uccgCAGGC...............-.....---..-G.C...C..G...A..CG......C-...-...-..-..........-...UGG......CC......AG......A.GCA.....................-...A......AGACGAC...G...AU.............................................................GUUGUUGAUGCAGAGU..................UCG...A.........AGAA.G.U............UAAA......G...A...C.........A..A......A...A..A.....G......U...A.AUC..........G.CC
   NZ_LR134533.1     ---.----..-C...A..G.C.-..CAA...AAA...............................................................UU.A...G...G....C..G...A...A..AU.G......G...UUU....A...C...G...C.A...CA..-...-AG.CC...C.A..A.GC-......CGAAG..............................................CACAA...............-.....-GC..AG.G...C..G...A..AG......CU...U...C..U..........G...CCG......AA......GA......G.UCAgcu...............aaaA...A......AGACGAC...G...AC.............................................................GUAGUUGAUGCGGAAU..................UUG...A.........AGAA.G.U............CAAA......G...A...C.........G..A......C...A..A.....G......A...A.AUAa.......uuG.CU
   NZ_LR217713.1     AUU.AGAG..GC...C..U.C.U..GAU...AAA...............................................................UU.A...A...C....A..G...A...G..UG.U......G...CUA....A...A...A...A.A...CA..G...AGU.GG...-.-..-.---......AACUA..............................................GCGGU...............-.....-AC..AU.C...U..G...A..UU......CC...A...C..G..........G...AAA......AU......AU......C.AAA.....................A...A......AGAUGAG...A...AU.............................................................GUUGUCGACGCUGAAU..................UUG...A.........AGAA.G.U............AAAA......G...A...U.........AguA......A...A..A.....A......U...A.AUC..........G.CA
   NZ_LR699007.1     GAU.CGAC..GC...U..U.C.U..GCC...AAA...............................................................CU.G...A...U....G..G...A...A..AU.U......G...CCC....A...G...C...A.G...CA..G...---.GC...G.C..A.GGCa...gg-----u............................................aCAGC-...............-.....AGG..UG.C...U..G...A..UG......CC...G...C..G..........-...--C......AG......GA......U.GCAg..................guA...A......AAAUGAU...G...AU.............................................................GUUGUCGAUGCUGAAU..................UUG...A.........AGAA.G.Uugac...gacagCAAA......G...A...C.........A..A......A...A..A.....A......U...A.AGG..........C.CC
   NZ_LR884459.1     GAU.UCA-..GG...U..G.C.C..---...---...............................................................--.-...-...-....G..G...C...G..CU.G......G...UGC....U...G...A...A.G...GC..G...UUG.AC...C.C.aA.GCCa....g-----uuc.......................................caagAAG--...............-....gCGG..UG.A...G..C...A..AG......CU...U...C..U..........A...CUA......AC......AA......U.GCU.....................-...-......-GAUGAC...G...AC.............................................................GUAGUUGAUGCUGAGU..................UCA...C.........UGAA.G.U............UAAA......G...A...C.........G..A......A...G..A.....C......A...A.AUAa........gG.UC
   NZ_LR990739.1     GCU.GUAC..GC...G..G.C.A..---...---g........c.....................................................--.-...-...-....C..G...C...C..GC.G......G...CAG....A...G...C...A.G...G-..-...---.GC...-.-..-.---......GGCA-acgccg.................................augcagc-CAGC...............-.....---..-G.G...C..A...A..UG......CC...C...A..G..........G...CGU......CC......AA......G.GCG.....................-...-......-GCUGAU...G...AC.............................................................GUGGUGGACGCCGAGU..................UCA...C.........CGAG.G.U............CAAG......G...A...C.........G..A......C...A..A.....G......A...A.GUA..........A.GC
   NZ_LS398110.1     GGC.CCAG..GC...U..U.C.G..AUG...AAG...............................................................CU.C...G...G....C..G...A...G..GC.C......A...UGU....A...C...A...A.G...CA..G...CAG.GC...-.-..-.--C.....g-----..............................................-----..............aG.....---..-G.C...C..G...A..CG......CC...A...A..G..........A...AGG......AC......GC......G.GCC.....................A...A......GGACGAC...-...--.............................................................GUCGUCGACGCGGAAU..................UCA...C.........CGAG.G.U............CGAC......G...A...C.........G..A......G...A..A.....G......A...A.CAAcaa....gaaG.UC
   NZ_LS483250.1     AAU.GGAA..UC...G..G.C.U..CAA...AAA...............................................................UU.G...A...U....G..G...A...A..AU.U......G...CUC....A...A...C...A.G...CA..A...---.GC...U.C..A.AGCa...ca---A-caagcu..................................ggcccaGAA--...............G....cCGG..AG.C...A..G...A..AC......AG...C...C..A..........A...AAG......AG......AA......A.GAC.....................G...U......AACUGGU...G...AU.............................................................GUUGUUGACGCUGAGU..................UCG...A.........AGAA.G.U............GAAA......G...A...A.........G..A......U...A..A.....A......A...A.AUA..........A.UA
   NZ_LS483369.1     GGU.GCAG..CC...A..G.C.C..---...AAA..........aacug..........................................ggugaa--.-...A...U....G..G...U...U..UA.C......G...CUC....A...A...G...C.G...CA..A...---.GC...U.G.aA.GC-......CCAAGcag........................................gugAAAGC...............G....cACA..AG.C...C..A...A..UG......CU...U...C..U..........G...CAA......AG......AA......A.---.....................-...-......-GACGAU...G...AU.............................................................GUCGUAGAUGCCGACU..................UUG...A.........AGAA.G.U............AAAA......G...A...C.........G..A......C...A..A.....A......A...A.AUA..........A.UU
   NZ_LS483422.1     GGU.AACU..GC...A..U.C.A..GCU...AAA...............................................................CU.U...C...U....G..G...A...A..AU.U......G...CAC....A...G...C...A.G...CA..A...---.GC...U.C..A.---......AGCGG..............................................GCGGC...............-.....-GC..AG.C...G..G...G..UG......CU...G...G..C..........G...CAG......AA......GC......G.AAG.....................A...A......AGAUGAU...G...AU.............................................................GUUGUUGACGCUGAAU..................UCG...A.........AGAA.G.U............UAAC......G...A...C.........A..Aa...gaU...A..A.....A......A...A.AUAa........uG.CC
   NZ_LS483429.1     AAU.UAAA..GC...C..U.C.U..GAA...CCA...............................................................UU.A...A...U....G..C...A...A..GC.A......G...UGC....A...A...G...C.A...AA..A...---.GC...U.C..A.ACAa....g-----..............................................-----..............cUg...gUGG..C-.-...-..G...A..GCa....aCC...A...C..A..........A...CAA......UC.....aUC......A.GCA.....................A...A......AGAUGAU...G...GC.............................................................GUGGUAGAUGCUGAAU..................UUG...A.........AGAA.G.U............GAAA......G...A...U.........A..A......U...A..A.....A......U...A.AUUca......ccG.CU
   NZ_LS483458.1     ---.----..--...-..-.-.U..GAA...CCA...............................................................UU.A...A...U....G..C...A...A..GC.A......G...CUC....A...A...G...C.A...AA..A...---.GC...U.C..A.ACAa....g-----..............................................-----..............cU.....-GG..UG.G...C..G...A..GCa....aCC...A...C..A..........A...CAA......UC.....aUC......A.GCA.....................A...A......AGAUGAU...G...GC.............................................................GUGGUAGAUGCUGAAU..................UUG...A.........AGAA.G.U............GAAA......G...A...U.........A..A......U...A..A.....A......U...A.AUU..........C.AC
   NZ_LS483470.1     GGU.GGAA..GC...G..U.C.C..GGC...AAG...............................................................CU.G...A...U....G..G...A...A..AU.G......G...CUC....A...G...C...A.G...CA..G...CAU.GC...U.G..A.AGGcg.cau-----c............................................u-----...............-u...cCGA..UG.C...A..G...G..GG......CU...-...C..A..........G...CAG......AG......CA......-.---ccuc.............cgguA...A......AGAUGAC...G...AC.............................................................GCCGUUGACGCCGAGU..................UUG...A.........AGAA.G.U............UAAA......G...A...C.........A..A......G...A..A.....G......U...A.AUC..........G.CC
   NZ_LT615228.1     AAG.GCAA..GU...C..A.-.-..---...---..........gaaguugggc.................................gaaaaaguaa--.-...-...-....-..-...U...G..GC.U......G...CUG....A...A...C...A.A...GC..U...AAA.GC...-.U..A.GC-......-----ggugcu..................................gcaggcGCAGC...............U.....-CC..AG.C...U..G...G..UG......--...-...-..A..........G...CAA.....aAA......GC......A.GCG.....................C...C......AGAUGCU...G...AC.............................................................GUAGUUGACGCUGACU..................UUA...A.........AGAG.G.U............UGAU......G...A...G.........A..A......G...A..A.....G......U...A.AUU..........C.UG
   NZ_LT615367.1     GGC.AGAA..GC...U..U.C.C..ACC...AAA...............................................................CU.G...C...U....G..G...A...A..GC.G......G...CGC....A...G...C...A.G...CA..A...CAG.GC...U.C..A.GG-......-C---..............................................-----...............-.....CGG..UG.C...U..G...C..GG......GU...G...C..U..........G...AUA......AC......GC......C.GCCc..................guC...A......GGAUGAC...G...AC.............................................................GUGGUGGAUGCUGAGU..................UCG...A.........AGAA.G.U............UAAA......G...A...C.........A..A......G...A..A.....A......U...A.AUC..........G.CC
   NZ_LT635480.1     ---.----..-U...G..A.C.G..CAG...GAA...............................................................UU.G...A...A....C..A...A...C..CU.G......U...CAC....A...A...A...A.G...CU..C...UAU.GC...C.A..A.UCA......GGGAGcaaa......................................cggu-----...............-.....-GC..AG.C...U..G...G..CG......CG...G...C..C..........G...GGG......--......--......-.-CAcaggguccg...accgguccgA...A......AGGCGAC...G...AU.............................................................GUGGUCGAUGCGGACU..................ACG...A.........AGUG.G.U............CGAU......G...A...C.........G..A......U...C..A.....G......G...A.GUA..........A.UC
   NZ_LT828648.1     GAC.GACC..GC...C..U.C.G..CAC...AAA...............................................................CU.G...G...C....C..G...A...A..GA.G......A...UGU....A...C...A...A.G...AA..A...GCA.UC...-.-..-.---......GGCUAccgcgggugc..........................cggggccgccGACGC...............-.....---..-G.A...C..G...G..GC......CA...G...C..A..........G..aACA......AC......GG......C.GCC.....................A...A......GACCGAC...G...AA......................a....................................agGUCGUAGACGCCGAGU..................UCG...A.........AGAA.G.Ug.........gaCAAA......G...A...C.........A..A......A...A..A.....G......U...A.A--..........G.UU
   NZ_LT897836.1     GAU.UCAG..GU...U..U.C.A..GAA...AAA...............................................................CU.U...A...U....A..G...A...C..GU.A......A...UUC....A...G...A...A.A...AA..G...UCU.--...C.A..A.GCA......GCAAG.............................................cGAAAA...............U.....-AG..UA.C...G..A...A..UG......--...-...-..-..........G...CAG......-C......AC......U.AAA.....................A...C......AGAAGAC...A...AU.............................................................GUUGUUGAUGCCGAGU..................UUG...A.........AGAA.G.U............AAAA......G...A...A.........A..A......A...A..A.....A......U...A.AUC..........G.CC
   NZ_LT906434.1     GGU.GCAG..CC...A..G.C.C..-AA...AAA..........cuggg...........................................ugaaa--.-...-...U....G..G...U...U..UA.U......G...CAC....A...A...G...C.G...--..-...CAA.GC...U.G.aA.GCCa...ac-----ggugagg...............................cagccggc-----...............-c...aACA..AG.C...C..G...A..--......CA...G...C..G..........G...UGC......CA......AA......G.GC-.....................-...-......-AACGAC...G...AU.............................................................GUAGUGGAUGCCGAGU..................UUG...A.........AGAA.G.U............GAAA......G...A...C.........A..A......A...A..A.....A......G...A.CUA..........A.CC
   NZ_LT906442.1     AAC.GGAU..GC...U..U.C.U..--G...---..........c..................................................ua--.-...-...-....-..-...A...A..AU.G......G...CUG....A...A...C...G.A...GU..G...UAU.GC...G.A..A.GCA......GUCUGcuggagcucaggcu.................ucccaagguagugagGCGC-...............-....aUGC..CG.C...U..C...A..CG......AG...U...C..A..........U...CAA......AA......CC......A.GCC.....................-...-......-GACGAG...G...GU.............................................................GUUGUUGAUGCUGAGU..................UUG...A.........AGAA.G.Uu.........aaGGAA......G...A...U.........G..A......U...A..A.....G......A...A.GUA..........A.UU
   NZ_LT906460.1     CAA.GAAU..UA...U..C.U.G..CAA...AAG...............................................................UU.U...A...-....C..G...A...A..CA.A......G...CAG....C...G...C...A.A...CA..A...CAA.GC...U.C..A.AG-......-GAUC.............................................aGAAGC...............U.....-G-..-G.C...C..A...A..GA......--...-...-..-..........-...UAA......UG......GU......A.GCA.....................C...A......GUU----...-...--.............................................................---GAAGAUGCUGAAU..................UUA...A.........AGAA.G.U............UAAA......GaugA...C.........G..A......C...A..A.....A......A...A.AUA.........aU.UG
   NZ_LT906467.1     GAA.GUCC..GC...G..G.U.G..GAG...AAG...............................................................CU.G...A...A....C..A...C...C..GA.G......U...CCC....A...G...G...A.G...CU..G...G--.--...-.-..-.---......GCAA-ggugcucuacga.....................ggcacaggccaac-----...............-.....---..-G.A...G..G...G..CG......CA...A...C..C..........C...AGG......CC......GA......U.GCGc..................cgA...C......CGACGAC...G...AC.............................................................GUGGUUGACGCUGAGGu...............ugUUG...A.........GGAA.G.A............CGCA......G...A...G.........G..A......G...U..C.....C......A...A.GGA..........C.UC
   NZ_LT906470.1     UAC.AUAA..GU...U.gG.C.U..GAA...CAA...............................................................AU.G...U...A....U..G...C...A..GC.U......G...CUC....A...A...C...A.G...UC..A...CAA.--...C.A..A.GCU.....g--CAG..............................................-----...............-....gCGG..UA.C...U..G...A..AC......--...A...A..C..........-...AAG......GU......AA......U.GCA.....................A...A......AGCUGAU...G...AU......................a....................................auGUUGUAGAUGCGGAUU..................AUA...C.........GGUA.G.U............GGAU......G...A...C.........G..A......A...A..A.....G......A...A.AUA.........aG.AA
   NZ_LT906479.1     GGU.GCAG..GU...G..U.C.C..GGC...AAG...............................................................CU.G...C...U....G..G...A...A..AU.G......G...CUC....A...G...G...C.G...CA..G...CAG.GC...U.C..A.GCA......-----..............................................-----...............-.....AGG..CG.C...U..G...A..CG......CC...G...G..U..........G...CCG......AC......AA......C.GCGgcg...............cagA...A......AGACGAC...G...AC.............................................................GUGGUUGACGCCGAGU..................UCG...A.........AGAA.G.U............UAAA......G...A...C.........A..A......A...A..A.....A......U...A.AUC..........G.CC
   NZ_LT907988.1     GCA.GAAG.cUC...G..G.C.G..-AG...AAG...............................................................AU.G...U...A....C..G...C...C..GA.U......G...CGC....A...G...G...C.G...CA..G...CAG.GC...C.-..-.---......GCCCA..............................................GCAGC...............-.....--A..GG.C...C..G...C..GG......CU...G...A..C..........G...GCG......CA......AA......G.CCG.....................G...U......GGACGAC...G...AC.............................................................GUGGUCGACGCCGACU..................UCA...A.........GGAA.G.U............CAAG......C...G...C.........G..A......C...C..A.....G......U...A.AGC..........G.GC
   NZ_LT960614.1     GGC.GCAG..GC...U..G.C.C..AUG...AAG...............................................................CU.C...-...-....-..-...-...-..--.-......G...GCG....A...G...G...C.G...AU..G...UAC.GC...C.C..A.GG-......GUCAGggc.......................................gaagCC---...............-g...gCGA..GG.C...C..G...G..CC......CC...U...C..C..........G...CG-......--......--......-.GCG.....................U...C......GGACGAC...G...AC.............................................................GUGGUCGACGCCGACU..................UCG...A.........AGAG.G.Uc.........aaGGAC......G...A...C.........G..A......C...A..A.....G......A...A.GUC.........gG.CC
   NZ_OU015521.1     UCU.UCUA..AA...U..U.G.G..-UA...GAA...............................................................CG.C...C...U....C..U...A...U..GC.U......U...CUA....A...G...A...A.G...G-..-...---.GU...U.C..U.GCU......GGAGAuccuuc.................................ggguagu--ACA...............A....cAGG..UU.C...U..A...A..AG......AA...U...C..U..........C...AGA......AU.....gAA......A.GUGu...................cA...A......GAAGGAG...G...AU.............................................................GUCGUUGAUGCUGAGU..................UCG...A.........AGAG.G.U............UAAA......G...A...C.........G..A......A...A..A.....G......A...A.AGG..........G.GA
   NZ_OU594967.1     CGU.UGAA..GU...U..U.C.A..UCC...AAA...............................................................CU.G...A...U....G..G...A...A..AU.U......G...CCC....A...G...C...A.G...AA..A...---.GC...G.C..A.GGCu....g-----cucaag..................................guggua-----...............-.....-GC.gAG.C...A..A...G..GU......CA...G...C..A..........A...CAG......CA.....aUC......C.GCG.....................A...Au...agUGGCGAC...G...AU.............................................................GUUGUUGAUGCGGAGU..................UUG...A.........AGAA.G.U............GAAC......G...A...Cg......auA..A......A...A..A.....A......U...A.AUA..........U.CG
   NZ_OU701459.1     AAG.CGAA..GU...U..U.C.U..CAC...AAA...............................................................CU.A...G...C....C..G...A...A..AC.A......A...UGU....A...U...A...A.A...AA..A...---.--...-.-..-.---......-----..............................................-----g............a.-.....---..--.-...U..G...A..AG......CU...A...A..U..........G...AUA......AA......AA......G.AAA.....................A...A......AGAUGAC...G...AU.............................................................GUCAUAGAUGCUGAAG..................UCG...A.........GUAA.GcU............UAAA......G...C...C.........C..U......A...A..A.....A......U...G.AUUag......ggC.UU
   NZ_OU912926.1     UCC.ACCG..-C...U..G.C.G..CAA...AAA...............................................................CU.U...U...C....A..G...A...A..AA.G......A...UGC....A..cG...C...C.G...CU..G...AAG.CU...-.-..A.---......G----ccagu....................................cccacCAGC-...............-.....--C..UG.G...U..G...A..AU......CU...G...G..G..........G...CGC......A-......-A......G.GCGacag.............caagA...A......AGAUGACagcG...AU.............................................................GUCGUAGAUGCCGAGU..................UCA...C.........CGAA.G.U............AAAA......G...A...U.........G..A......C...A..A.....A......G...C.AAA..........A.GA
   NZ_OW485601.1     GAG.UCAG..GC...C..G.C.G..AUG...AAG...............................................................AU.C...G...G....C..G...A...G..GC.G......A...UGU....A...C...A...A.G...GC..G...CAG.GC...-.-..-.---......GGAUGccggugccgccggccc.............gcaggccggcccuggucCGGAC...............-.....---..-G.C...C..G...G..CG......CG...G...C..G..........C...CGG......G-......--......U.GGC.....................A...A......GGACGAC...A...AG.............................................................GUGGUCGACGCCGAAU..................UCG...A.........GGAA.G.U............CGACc...cgA...A...C.........A..A......G...A..A.....G......A...A.GUC..........C.GC
   NZ_OW711693.1     UAC.UCAG..GC...A..U.U.U..UAC...AAA...............................................................AU.A...A...G....C..G...A...A..AA.G......C...UUU....A...U...C...A.G...CA..G...---.-G...C.C..G.GCG.....g-----..............................................-----..............aC.....AGG..AU.C...C..A...A..AC......CA...G...C..A..........A...AAU......CA......AA......A.CCC.....................-...-......CGGUGAC...G...AC.............................................................GUAGUUGACGGCGACU..................AUA...A.........AGAA.G.U............GUAG......-...-...-.........A..A......U...A..U.....A......U...A.GCU..........G.UG


   Structure         (((....(..((...(..(.(.(..(((.....................................................................)).)............)..)...)...)..)).)...............................................((...(.(......(.............................................................................)......))...).).............((......((...(...(..(..............(((........................(((.................................((((((......................................................................))))))..))).......................))).............)))).)..............))...........................................................................).))


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dnaK-dnaJ



Position: 1906-2020, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R R Y Y A A R Y R R R Y Y A R R G C A R G C R R R R G C G A Y G A Y R A Y G U G U Y G A Y G C Y G A U U Y R A R G A R G U R A G A Y R A A A R A R R 5'