dadA-dadX



Position: 130-254, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.C) Reactivity: nanC Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.C) Reactivity: 0.5C Position: 36 (position.label in template: 36.A) Reactivity: 1A Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.A) Reactivity: 1A Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.C) Reactivity: 0.5C Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.A) Reactivity: 1A Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.C) Reactivity: 0C Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.C) Reactivity: 0.5C Position: 56 (position.label in template: 56.C) Reactivity: 0C Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.U) Reactivity: nanU Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.A) Reactivity: 0.5A Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.A) Reactivity: 0.5A Position: 67 (position.label in template: 67.C) Reactivity: 1C Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.A) Reactivity: 0.5A Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.A) Reactivity: 0.5A Position: 79 (position.label in template: 79.A) Reactivity: 0.5A Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.C) Reactivity: 1C Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.A) Reactivity: 0A Position: 90 (position.label in template: 90.A) Reactivity: 0.5A Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.C) Reactivity: 0.5C Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.A) Reactivity: 0A Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.A) Reactivity: 1A Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.A) Reactivity: 0A Position: 111 (position.label in template: 111.C) Reactivity: 0C Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.C) Reactivity: 0.5C Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.C) Reactivity: 0.5C Position: 122 (position.label in template: 122.A) Reactivity: 0A Position: 123 (position.label in template: 123.C) Reactivity: 0C Position: 124 (position.label in template: 124.C) Reactivity: 0C Position: 125 (position.label in template: 125.A) Reactivity: 1A Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.C) Reactivity: 0C Position: 133 (position.label in template: 133.C) Reactivity: nanC Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.A) Reactivity: nanA Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.A) Reactivity: nanA Position: 145 (position.label in template: 145.U) Reactivity: nanU Position: 146 (position.label in template: 146.U) Reactivity: nanU Position: 147 (position.label in template: 147.A) Reactivity: nanA Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.G) Reactivity: nanG Position: 153 (position.label in template: 153.A) Reactivity: nanA Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.U) Reactivity: nanU Position: 158 (position.label in template: 158.C) Reactivity: nanC Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.A) Reactivity: nanA Position: 161 (position.label in template: 161.G) Reactivity: nanG Position: 162 (position.label in template: 162.C) Reactivity: nanC Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.C) Reactivity: nanC Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.3')3' 10 20 30 50 100 150


dadA-dadX



Position: 130-254, Conformation: #0







Retained alignments:


   NC_004578.1       G...GC.....gC.G..U.G..C..C.G......G....CuuccaG......GUG.A.C.A...G.........UG......GUC.GAU....C......G.U....C.A....G..C.CG..G.C..G....G..U..C..G....................................GC.A.U.G.G..A.AA..CC.A.GCUU.CGCC...AAUGCCGGUCAGGUCUCG.......................................................CCG.G.G..CUA...CGC.CUCGCCU...UGGGCUGCG.......................CC..G....GG.UG.U.G..C..CGC..UCAAGGCA.AUCAAAUGG......CUG.C...U....G...C..A.G.C.......G.UC
   NC_005126.1       G...CA......A.G..G.U..C..A.U......G....A.....A......GUC.A.C.U...G.........UC......AUU.GAU....C......G.C....C.A....G..-.--..-.-..-....-..-..-..-ggaagugc..................ugcugagg..--.-.-.-.-..A.AA..CC.A.GUGC.GGCG...AAUGCCGGGCAGAUCUCA.......................................................CCG.G.G..AUA...CGC.AACCCCG...UGGGGAGCG.......................CC..G....GG.UA.U.U..C..CAU..UGAAAGCG.AUUAAGUGG......AUG.U...U....U...C..A.A.C.......G.UC
   NC_005966.1       G...G-......G.G..C.A..C..A.U......G....U.....-......--C.A.C.U...G.........UU......CUU.GAU....C......G.U....C.A....A..-.--..-.-..-....-..-..-..-acaggucc..................agcagaag..--.-.-.-.-..A.AA..CC.A.GUUU.UGGU...AAUGCAGGACAAAUUUC-.......................................................UCC.U.G.gUUA...UUC.GACGCCU...UGGGCAGCG.......................CC..U....GG.CA.U.U..C..CAU..UUAAAGCG.GUCAAAUGG......AUG.U...U....U...C..A.G.C.......A.UC
   NC_007626.1       G...GC......C.G..G.U..C..A.C......G....A.....G......GUU.A.C.C...G.........UG......GUC.GAC....C......G.G....C.G....C..G.AA..G.G..C....G..C..G..G....................................GG.C.U.G.G..A.AA..CC.A.GCUU.CGCC...AAUGGCGGCCAGAUCUCC.......................................................CCC.U.G..CCA...UGC.CGAGCCC...UGGGCCAAU.......................CC..Cu..cGG.UG.UuG..C..C--..-CAAGGUG.CUGAAAUGG......CUG.G...G....C...C..G.C.G.......A.--
   NC_007645.1       G...CU......C.G..G.G..C..A.U......G....A.....A......GUG.A.C.U...G.........UU......GUC.GAC....C......G.A....C.A....A..U.CC..A.G..U....C..C..U..G....................................CC.U.U.G.G..A.AA..CC.A.GUUA.CGGC...AACGCCGGCGAAAUCUCA.......................................................CCC.G.G..UUG...CUC.UGCGCCC...UGGGCGGCC.......................CC..G...gGG.AU.U.G..C..UUU..-GAAAGCA.AUUAAGUGG......CUG.U...G....U...A..U.G.A.......A.GC
   NC_007947.1       G...GC......A.G..G.A..C..A.U......G....A.....A......GUC.A.U.C...G.........UA......CUG.GAC....C......G.G....C.A....A..C.CU..G.G..C....C..C..A..G....................................CG.C.U.U.G..A.AA..CC.A.GCUA.CGCC...AAUGCCGGACAGGUGUCU.......................................................CCC.G.G..UUA...UGC.CAGUCCA...UGGGCAGCG.......................CC..G....GG.CA.U.U..C..CGC..UCAAGGCA.AUCAAAUGG......AUG.C...U....G...C..G.C.C.......G.CC
   NC_007951.1       C...GC......C.G..G.U..C..A.C......G....A.....A......GUG.A.C.G...G.........UU......AUC.GAU....C......G.C....G.A...gG..C.CG..G.C..C....-..C..G..G....................................CG.C.U.C.G..A.AA..CC.A.GUUU.CGCC...AAUGCCGGCCAGAUCUC-.......................................................GCC.G.G.gCUA...CGC.AUCGCCG...UGGGCCGCG.......................CC..G....GG.UG.U.G..C..CGC..UGAAGGCC.GUCAAGUGG......AUG.U...U....C...C..A.G.Aaa..cacG.CG
   NC_007963.1       C...CA......G.G..G.G..C..A.C......G....A.....G......GUC.A.C.G...G.........UG......GUG.GAU....C......G.-....U.C....G..C.GA..G.G..C....C..C..C..C....................................GC.C.A.U.G.gA.AA..CC.A.GCUA.CGGC...AAUGCCGGUCAGGUGUCG.......................................................UUC.G.G..GUU...UUC.CUCCCCC...UGGGCGGCG.......................CC..C....GG.CA.U.C..C..CGC..GCAAGGCA.CUCAAGUGG......AUG.U...U....C...C..A.G.G.......A.GC
   NC_008027.1       G...GC......C.C..G.G..C..A.AgguuucG....A.....G......GUC.A.C.G...G.........UG......GUC.GAU....C......G.U....C.A....A..C.CG..G.C..G....G..U..G..G....................................CC.A.U.G.G..A.AA..CC.A.GCUU.UGCC...AACGCAGGCCAGAUCUCG.......................................................CCC.G.G..CUA...UGC.CUCGCCC...UGGGCCGCC.......................CC..G....GG.GG.U.G..C..CGC..UGAAGGCC.AUCAAGUGG......CUG.C...U....C...G..A.G.C.......G.CC
   NC_008686.1       G...GC......C.G..G.G..C..A.U......G....A.....G......GUG.A.C.G...G.........UG......AUC.GAC....C......G.G....C.A....G..G.AA..G.G..C....-..C..C..-g................................g..CG.C.U.G.G..A.AA..CC.A.GCUU.UGCC...AAUGCCGGCGAGAUCUCG.......................................................CCC.G.G..CUA...UUC.UUCGCCC...UGGGCGGCG.......................CC..C....GG.CG.U.G..C..CGC..UGAAGGCG.CUGAAAUGG......AUG.U...U....C...C..A.G.C.......G.CC
   NC_008709.1       G...--......-.G..C.U..U..U.-......C....A.....G......GUG.A.C.G...G.........UG......AUU.GAU....C......G.U....C.A....G..C.CC..G.G..U....G..U..U..G....................................CU.U.U.G.G..A.AA..CC.A.GUUU.UGCU...AAUGCAGGACAAAUUUCA.......................................................CCU.G.G..UUA...UUC.UGCGCCU...UGGGCGGCG.......................CC..A....GG.UA.U.C..C..CUU..UUAAAGCG.GUUAAGUGG......CUA.A...U....G...C..A.A.A.......A.GC
   NC_008781.1       C...GC......G.G..-.G..C..A.U......G....A.....A......GUC.A.C.G...G.........UG......GUG.GAC....C......G.G....C.A....G..C.CC..G.A..C....G..C..C..G....................................CG.C.U.G.G..A.GA..CC.A.GCUU.UGCC...AAUGCCGCGCAGAUUUCC.......................................................GUC.A.G..CUA..cUGC.-GAGCCC...UGGGCCA-A.......................CC..G....GGaCG.C.G..C..CGC..UGAAGGCG.CUGAAAUGG......AUG.-...-....-...C..U.G.C.......G.CG
   NC_008786.1       G...GA......G.G..G.G..C..A.C......G....A.....G......GUG.C.U.C...G.........UG......AUC.GAG....C......G.C....C.A....G..C.CA..G.A..G....G..U..G..G....................................CG.C.G.G.G..A.GA..CC.A.GUUU.UGCC...AACGCCGGGCUGGUGGCC.......................................................CCC.G.G..GCA...UUCcUACACC-...UGGGCGUCG.......................CC..G....AA.GG.C.G..C..CCG..GGAUCUUG.CUCAAAUCG......CUG.U...U....U...C..-.-.-.......U.CC
   NC_009792.1       G...GC......U.G..G.G..C..A.U......G....A.....C......GUC.A.C.C...G.........UC......AUC.GAU....C......G.U....G.A....A..C.CU..G.G..C....C..C..G..G....................................CG.C.U.G.G..A.AA..CC.A.GCGC.GGCG...AACGCCGGACAAAUUUCU.......................................................CCG.G.G..CUA...UGC.CGCGCCG...UGGGCGGCG.......................CC..G....GG.UG.U.G..C..CGC..UGAAGGCC.AUCAAGUGG......AUG.U...U....C...C..A.G.C.......G.CC
   NC_010002.1       C...CU......G.G..G.C..C..A.C......G....A.....G......GUC.A.C.G...G.........UC......AUC.GAC....C......G.C....C.A...gG..C.CG..C.G..C....-..C..C..G....................................GC.G.C.C.G..A.AA..CC.A.GCUU.UGCC...AACGGAGGGCAGAUCUCG.......................................................GUC.A.G..CCA...CGC.CGAGCCC...UGGGCCAAC.......................CC..C....GG.CG.C.A..C..CGC..UGAAGUUG.CUGGGCUGG......CUG.G...G....C...C..G.G.C.......A.GG
   NC_010170.1       G...GC......C.G..G.C..C..A.U......G....A.....U......GUC.G.U.A...G.........UG......GUC.GAC....C......G.-....C.C....G..C.CC..G.G..G....C..C..C..G...................................gCC.C.A.G.G..A.AA..CC.A.GCCU.GGCC...AACGGCGGACAGAUCUCC.......................................................GUC.U.C..GUA...CGC.CGAGCCC...UGGGCCAAU.......................CC..G....CA.AG.C.G..C..CCC..UGAAGCUG.CUCAAAUGG......GUG.U...U....C...C..A.G.G.......A.CG
   NC_010508.1       G...CG......C.C..G.G.cC..A.U......G....A.....A......GUC.A.C.G...G.........UG......AUC.GAC....C......G.G....GaA....G..C.CG..G.C..C....-..C..G..G....................................CG.C.U.G.G..A.GA..CG.A.GUUU.CGCG...AACGCAGGCCAGAUCUCG.......................................................CCC.G.G..CUA...UGC.GGCGCCG...UGGGCCGCG.......................CC..C....GG.CG.U.G..C..CGC..UGAAGGCC.GUCAAAUGG......AUG.U...U....C...G..A.A.A.......A.GC
   NC_010554.1       A...CA......A.G..G.G..C..A.U......G....A.....A......GUC.A.U.U...G.........UU......GUC.GAU....A......G.G....C.A....A..-.--..-.-..-....-..-..-..-aguagugcg................gcagaagag..--.-.-.-.-..-.-A..CG.A.GUGC.AGGU...AAUGCAGGGCAAAUAUCU.......................................................CCG.G.G..UUA...UGC.AACACCU...UGGGGUGCC.......................CC..G....GG.UA.U.U..C..CAU..UAAAAGCA.GUAAAAUGG......AUG.U...U....U...C..A.A.A.......A.--
   NC_010622.1       C...GC......G.G..G.U..C..A.U......G....A.....A......GUC.A.C.C...G.........UG......AUC.GAC....C.....gC.G....A.G....G..C.GG..G.U..C....-..C..U..G....................................CG.C.U.C.G..A.AA..CG.A.GCUU.UGCG...AACGCCGGCCAGAUUUC-.......................................................GCC.G.G.gCUA...CGC.CGCCCCG...UGGGCAGCG.......................CC..G....GG.CG.U.G..C..CGC..UGAAGGCC.GUCAAAUGG......AUG.U...U....C...C..A.G.Aaa..cacG.CG
   NC_010645.1       G...GC......A.G..G.C..C..A.U......G....A.....G......GUC.G.U.C...G.........UC......AUU.GAU....C......G.U....U.C....C..A.CC..G.G..G....C..C..U..G....................................CC.C.A.A.G..A.AA..CC.A.GCUU.GGCC...AAUGGCUCGCAGAUUUCG.......................................................GUG.U.C..CUA...UGC.CGAACCC...UGGGCCAAU.......................CC..C....CA.GG.C.G..C..CGC..UCAAGCUG.CUGAAAUGG......AUG.U...U....C...C..A.G.G.......A.CG
   NC_010681.1       C...GC......G.G..G.A..C..A.C......G....A.....A......GUG.A.C.C...G.........UU......AUC.GAU....C......G.C....G.A....GgcC.GG..G.C..-....-..C..G..G....................................CG.C.U.C.G..A.AA..CC.A.GUUU.CGCC...AACGCCGGCCAGAUCUC-.......................................................GCC.G.G.gCUA...CGC.GUCGCCG...UGGGCUGCA.......................CC..G....GG.CG.U.G..C..CGC..UGAAGGCG.GUCAAGUGG......AUG.U...U....C...C..A.G.A.......A.AC
   NC_010694.1       G...GC......U.G..G.C..C..A.U......G....A.....A......GUC.A.C.G...G.........UG......AUU.GAC....C......G.U....C.A....G..C.CC..G.C..U....C..C..G..G....................................CG.C.U.G.G..A.AA..CC.A.GCGC.CGGA...AAUGCCGGACAAAUAUCU.......................................................CCU.G.G..CUA...UGC.CGCCCCC...UGGGCUGCG.......................CC..C....GG.CG.U.G..C..CGC..UCAAGGCU.GUGAAAUGG......AUG.U...U....C...C..A.G.C.......G.CC
   NC_011365.1       G...GU......U.G..G.C..C..A.U......U....C.....G......GUC.A.C.G...G.........UC......AUC.GAC....C......G.C....C.A....G..C.CG..G.G..U....G..C..C..G....................................GG.C.U.G.G..A.AA..CC.A.GCUU.UGCC...AAUGCCGGGCAGGUUUCG.......................................................CCC.G.G..CUA...UUC.CUCGCCC...UGGGCCGGC.......................CC..C....GG.GG.U.G..C..CGC..UGAAAGCC.GUGCGCUGGc...ugAUG.A...U....G...A..A.G.A.......A.CC
   NC_012560.1       G...GC......C.G..G.U..U..U.C......G....A.....G......GUG.G.U.G...G.........UG......GUC.GAC....C......G.C....-.-....G..C.CG.aG.G..C....G..C..C..G....................................GC.CaU.G.G..A.GA..CC.A.GCUU.CGCC...AACGCCGGCCAGGUGUCG.......................................................CCC.G.G..CUA...CGC.CUCGCCC...UGGGCGGCU.......................CC..C....GG.CG.U.G..C..CGC..UCAAGGCG.CUCAAGUGG......CUG.U...U....C...G..A.G.C.......G.CC
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   NZ_CP059319.1     C...GC......G.G..G.G..C..A.U......G....A.....G......GUC.G.U.C...G.........UC......GUC.GAC....C......G.G....C.A....G..-.-G..A.C..G....G..CccC..G....................................CG.C.U.C.G..A.AA..CC.A.GCUU.CGCC...AAUGCGGGCGAGAUCUCG.......................................................CCC.G.G..CUA...UGC.GUCGCCA...UGGGCCGCG.......................CC..G....GG.GA.U.U..C..CGG..CCAAGGCG.CUACGCUGG......CUG.U...U....C...A..U.G.C.......G.CC
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   NZ_CP059565.1     A...GC......A.G..G.G..C..A.U......G....A.....G......GUA.A.C.G...G.........UU......AUC.GAC....C......G.-....-.A....G..C.CG..G.A..G...cA..G..C..G....................................GCgA.U.G.G..A.AA..CC.A.GUUU.CGCC...AAUGCCGGCCAGCUUUCU.......................................................UAU.G.G..CUA...CAC.CACACCG...UGGGCGGCG.......................CC..C....GG.CA.U.U..C..CCA..AAAAAGCG.GCCAAAUGG......CUG.A...U....G...A..A.G.C......cG.--
   NZ_CP059567.1     G...GC......C.G..G.U..C..A.U......G....A.....A......GUU.A.C.C...G.........UU......AUC.GAG....C......G.C....G.A....A..C.AG..G.G..C....G..C..C..G....................................CA.C.U.G.G..A.AA..CC.A.GUUU.CGCC...AACGCCGGCCAGCUCUCU.......................................................UAC.G.G..CUA...CAC.CACGCCU...UGGGCCGCC.......................CC..C....GG.CA.U.U..C..CGC..AAAAAGCC.GCCAAAUGG......CUG.U...U....U...A..A.A.G.......A.AC
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   NZ_LR861803.1     G...GC......C.G..G.U..U..G.C......C....A.....G......GUC.A.C.C...G.........UG......GUC.GAC....C......G.C....C.A....G..C.CG..G.C..G....G..C..G..G....................................CG.U.U.G.G..A.GA..CC.A.GCUA.UGCC...AACGCCGGCCAGCUGUCG.......................................................UUC.G.G..CUA...CAC.CUCGCCA...UGGGCUGCG.......................CC..C....GG.CG.U.G..C..CCG..GCAAGGCG.AUGAAGUGG......CUG.U...U....C...G..A.G.C.......A.GC
   NZ_LR990739.1     G...UC......-.C..G.G..C..U.G......C...gA.....G......GUC.A.C.C...G.........UG......GUG.GAC....C......G.C....C.A....G..C.CA..G.C..C....U..C..C..G....................................CG.C.U.G.G..A.AA..CC.A.GCUA.CGGC...AACGCGGGCCAGCUGUCG.......................................................UUC.G.G..CUA...CAC.CUCGCCC...UGGGCCGCC.......................CC..C....GG.CG.U.G..C..CGG..GCAAGGCG.AUGAAGUGG......UUG.U...U....C...G..C.C.C.......A.GC
   NZ_LS483250.1     A...GC......U.G..G.G..C..A.U......G....A.....U......GUG.A.C.U...G.........UC......AUU.GAU....C......G.C....C.A....G..C.CA..A.G..G....G..G..G..G....................................CU.G.A.A.G..A.AA..CU.A.GUUU.UGCU...AAUGCGGGACAGAUUUCU.......................................................UAU.G.G..UUA...CUC.AUCUCCU...UGGGCUGCG.......................CC..U....GG.UA.U.A..C..CGG..UGAAAGCA.AUUAAAUGG......CUG.G...C....G...C..A.A.-.......-.--
   NZ_LS483377.1     G...GC......C.G..G.G..U..U.U......G....A.....A......GUC.A.C.G...G.........UC......AUC.GAC....C......G.C....C.A....A..C.CC..G.G..C....C..C..G..G....................................CG.C.U.G.G..A.AA..CC.A.GCUU.CGCC...AAUGCCGGCCAGCUGUCA.......................................................UUC.G.G..CUA...UAC.CUCGCCG...UGGGCGGCC.......................CC..G....GG.CG.U.G..C..CGA..AGAAGGCC.AUCGGCUGG......CUG.U...U....C...G..A.G.A.......A.GC
   NZ_LS483422.1     A...GA......A.G..G.G..C..A.U......G....A.....A......GUC.C.U.U...G.........UU......GUU.GAU....A......G.A....C.A....A..C.--..-.-..-....-..-..-..-augaugu....................ggcagaa..--.-.-.-.G..A.GA..CC.A.GUGC.UGCA...AAUGCAGGGCAAAUUUCU.......................................................CCA.G.G..CUA...UGC.GACCCCU...UGGGGAGCG.......................CC..A....GG.GA.U.C..C..CUU..UAAAAGCG.GUAAAAUGG......AUG.U...U....U...G..A.G.A.......A.--
   NZ_LS999205.1     A...GC......C.G..G.A..U..U.U......G....A.....A......GUG.A.C.C...G.........UA......GUG.GAC....C......G.U....C.A....G..C.CG..G.C..C....G..C..C..G....................................CC.A.U.G.G..A.AA..CC.A.GCUU.CGCC...AACGCCGGCCAGGUCUCG.......................................................CCU.G.G..CUA...UGC.GUCGCCC...UGGGCCGCU.......................CC..G....GG.UG.U.A..C..CGC..UCAAAGCC.AUCAAAUGG......CUG.C...U....G...C..A.G.C.......G.CC
   NZ_LT615367.1     C...GC......C.G..G.A..C..A.U......G....A.....C......GUC.A.C.C...G.........UG......AUU.GAU....C......G.C....C.A....G..G.CC..G.A..G....G..U..G..G....................................CU.C.A.G.G..A.AA..CC.A.GUGC.GGCC...AACGCCGGGCAAAUUUCA.......................................................CCC.G.G..UUA...CUC.AGCCCCC...UGGGCUGCG.......................CC..C....GG.GA.U.C..C..CGC..UUAAAGCC.GUUAAGUGG......CUG.U...U....U...C..A.G.C.......G.CC
   NZ_LT853882.1     G...GC......-.C..G.G..C..U.G.....gG....A.....G......GUC.A.C.C...G.........UG......GUC.GAC....C......G.U....C.A....G..C.CA..G.C..G....G..C..G..G....................................CG.C.U.G.G..A.AA..CC.A.GCUA.CGCC...AAUGCUGGGCAGCUGUCG.......................................................UUC.G.G..UUA...CAC.CUCGCCC...UGGGCAGCG.......................CC..C....GG.CG.U.G..C..CCG..GCAAGGCG.AUGAAGUGG......UUG.U...U....C...G..A.A.C.......A.GC
   NZ_LT855380.1     G...GC......U.-..U.U..C..A.G......-....-.....-......GUC.A.C.G...G.........UG......GUC.GAC....C......G.U....C.A....G..C.CU..G.C..U....G..C..C..G....................................CC.A.U.G.G..A.AA..CC.A.GUUU.UGCC...AACGCCGGUCAGGUCUCG.......................................................CCG.G.G..CUA...CGC.GUCGCCG...UGGGCUGCG.......................CC..G....GG.UG.U.G..C..CGC..UCAAGGCG.AUCAAGUGG......CUG.U...U....G...C..A.A.C.......G.CC
   NZ_LT906479.1     G...GC......G.G..G.U..C..A.C......G....A.....G......GUG.A.C.G...G.........UG......CUC.GAU....C......G.U....C.A....A..C.CG..G.G..G....C..C..G..G....................................CG.A.U.G.G..A.AA..CC.A.GCGC.AGCG...AACGCCGGGCAGAUCUCG.......................................................CCG.G.G..CUA...CGC.CGCGCCC...UGGGCGGCG.......................CC..G....GG.CG.U.G..C..CGC..UGAAGGCC.AUCAAAUGG......AUG.U...U....C...C..A.G.C.......G.CC


   Structure         (...((........(..(.(..(..(.(......(....(.....(......(((.(.(.(.......................................(.(..............(.((..(.(..(..................................................)).).).).)........))...((((..(((.......(((((................................................................))).).)........)))..))))......((.............................)).......)).))...)..)..)))..........................))).....)....)...)..............).))


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dadA-dadX



Position: 130-254, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R Y G G C A Y G A R G U A C G U R U Y G A Y C G A R Y Y R Y G R G A R A C C A G Y Y Y Y G C Y A A Y G C G G C A R R U Y U C Y C G G Y U A Y C C R C C U G G G C G C C C G G Y R U C C Y U A A R G C R U A A R U G G U G Y U A R R Y 5'