clpP-clpX-lon



Position: 1010-1124, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.C) Reactivity: 1C Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.A) Reactivity: 1A Position: 38 (position.label in template: 38.A) Reactivity: 0A Position: 39 (position.label in template: 39.C) Reactivity: 1C Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.A) Reactivity: 0.5A Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.C) Reactivity: 0C Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.A) Reactivity: 0.5A Position: 51 (position.label in template: 51.C) Reactivity: 1C Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.A) Reactivity: 0A Position: 55 (position.label in template: 55.C) Reactivity: 0C Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.C) Reactivity: 0.5C Position: 61 (position.label in template: 61.A) Reactivity: 0A Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.A) Reactivity: 0A Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.A) Reactivity: 1A Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.A) Reactivity: 0.5A Position: 73 (position.label in template: 73.A) Reactivity: 1A Position: 74 (position.label in template: 74.C) Reactivity: 0.5C Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.A) Reactivity: 0.5A Position: 77 (position.label in template: 77.C) Reactivity: 0C Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.A) Reactivity: 0A Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.A) Reactivity: 1A Position: 89 (position.label in template: 89.C) Reactivity: 0.5C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.A) Reactivity: 0A Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.A) Reactivity: 0A Position: 104 (position.label in template: 104.A) Reactivity: 1A Position: 105 (position.label in template: 105.C) Reactivity: 1C Position: 106 (position.label in template: 106.A) Reactivity: 1A Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.A) Reactivity: 0A Position: 112 (position.label in template: 112.A) Reactivity: 0A Position: 113 (position.label in template: 113.A) Reactivity: 0A Position: 114 (position.label in template: 114.A) Reactivity: 1A Position: 115 (position.label in template: 115.A) Reactivity: 1A Position: 116 (position.label in template: 116.A) Reactivity: 1A Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.C) Reactivity: nanC Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.C) Reactivity: nanC Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.C) Reactivity: nanC Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.A) Reactivity: nanA Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.A) Reactivity: nanA Position: 137 (position.label in template: 137.C) Reactivity: nanC Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.C) Reactivity: nanC Position: 141 (position.label in template: 141.C) Reactivity: nanC Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.A) Reactivity: nanA Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.3')3' 10 20 30 50 100 150


clpP-clpX-lon



Position: 1010-1124, Conformation: #0







Retained alignments:


   NC_002977.6       CC.G...C..G....A.G.G.A...A...U.U.....G.....C.A........G.....G.....A.G..-.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-agcgccuccacg.............................ggcgccgacaagc...-.-..-..-..-.-.-....-..-..U....G.......C.C.......C...A...AG..C..C.....G..A...A..G...........G..A....G...A..U..C...A..A.G..A.A....A..G.U.U.C.U.GGA.UGAA...UACGUG.............................................................AU.CG.G.CCA.G..G.A.G.A.A.G.....G..C...C..A.A...G...C.G.G....AU..U....C....U.....C.UCGGUC.GCCG
   NC_003869.1       AA.A...C..G....A.A.G.A...A...U.U.....U.....G.A........A.....G.....A.G..G.A...U...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-auggacaugg..................................cuaugagaga...-.-..-..-..-.-.-....U..U..U....G.......C.C.......A...A...AG..C..C.....A..A...A..A...........G..A....A...A..U..A...AaaG.C..U.U....U..C.-.C.U.U.GAC.CAGU...-AUGUU.............................................................AU.UG.G.UCA.G..G.A.C.A.G.A.....G..C...U..A.A...A...A.A.A....GC..U....U....U.....G.GCAGUU.GCUG
   NC_003910.7       UC.G...C..G....A.A.G.A...A...A.U.....U.....U.C........U.....G.....A.A..A.U...U...U.-...-.-.C.G.C...C...A.A...A.AG.A..A.A.........................................................G.U..A..A..A.G.Aa.gcA..U..U....G.......C.C.......U...U...CU..C..C.....U..A...U..C...........G..A....G...A..U..C...C..G.U..G.A....G..A.G.C.C.U.CGA.UGAA...UACGUU.............................................................AU.UG.G.UCA.A..G.A.C.C.A.U.....G..C...G..A.A...A...A.A.A....GU..U....U....U.....A.GCAGUU.GCUG
   NC_003911.12      CC.G...C..G....A.A.G.A...G...A.C.....C.....A.A........A.....A.....G.-..-.C...A...G.C...A.G.C.-.-...-...-.-...-.--.-..-.-cugaaauc.....................................cucggacgg...-.-..-..-..-.-.-....G..G..U....G.......C.C.......C...A...CG..C..C.....G..C...G..C...........G..A....U...A..U..C...U..G.C..G.A....U..G.U.G.C.U.GGA.UGAC...UAUGUG.............................................................AU.CG.G.CCA.G..U.C.C.A.C.C.....G..C...C..A.A...G...C.G.G....GU..G....C....U.....C.UCGGUC.GCCG
   NC_004193.1       --.-...-..-....A.U.U.A...G...G.U.....-.....A.C........A.....G.....A.A..-.G...A...A.G...A.U.A.U.G...G...A.A...A.UG.A..A.C.........................................................G.A..A..A..U.U.C....C.aA..A....A.......C.C.......A...A...AG..-..-.....G..-...-..-...........-..A....A...A..U..U...U..G.C..G.A...uA..U.A.C.U.U.GA-.UGAU...UAUGUA.............................................................AU.CG.G.UCA.A..G.A.U.A.A.A.....G..C...A..A.A...G...A.A.G....AA..C....C....U.....C.UCUGUA.GCAG
   NC_004347.2       UC.G...U..G....A.A.G.A...G...A.U.....U.....A.A........A.....G.....A.A..A.U...C...U.C...U.C.C.C.A...A...G.C...G.UG.A.uA.A.........................................................U.G..A..C..A.-.A....A..U..U....G.......C.C.......A...A...CG..C..C.....A..C...A..C...........G..A....G...U..U..G...C..G.C..G.C....G..C.A.U.U.U.AGA.CGAU...UAUGUG.............................................................AU.UG.G.UCA.G..G.A.C.A.G.A.....G..C...U..A.A...A...A.A.A....GU..G....C....U.....U.UCUGUU.GCGG
   NC_004369.1       CU.G...C..A....A.C.G.A...G...A.U.....C.....A.U........C.....G.....A.A..G.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-aggaacucgggcaggcucaggggc.....aggaggaggagcacggcgaacuccc...-.-..-..-..-.-.-....-..C..A....-.......-.A.......G...C...CG..U..C.....G..G...A..-...........G..A....U...C..U..C...C..G.C..G.-....-..U.U.U.C.U.GGA.CAAG...UAUGUG.............................................................GU.GG.G.CCA.G..G.A.C.C.A.G.....G..C...G..A.A...A...C.G.G....AU..C....C....U.....C.UCCGUU.GCGG
   NC_004578.1       CC.G...C..G....A.G.G.A...G...G.U.....G.....C.A........G.....G.....A.A..G.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-cacaggcagaaag............................cagcgcgcauaaa...-.-..-..-..-.-.-....-..U..U....G.......C.C.......U...U...CG..C..C.....U..A...A..A...........G..A....A...A..U..C...A..G.C..G.G....C..A.U.C.C.U.UGA.CCAG...UAUGUA.............................................................AU.CG.G.UCA.G..G.A.A.C.G.U.....G..C...C..A.A...A...A.A.G....GU..U....C....U.....C.GCAGUA.GCGG
   NC_004603.1       UC.G...C..G....A.A.G.A...A...A.U.....C.....A.A........G.....G.....A.U..G.U...U...C.U...C.C.C.U.A...A...G.A...A.AG.A..A.-uc..................................................ug...-.-..-..A..A.G.C....G..U..U....A.......C.C.......A...A...CG..C..C.....A..A...A..A...........C..A....G...A..U..C...C..G.U..G.A....A..C.A.C.C.U.UGA.CGAC...UAUGUG.............................................................AU.CG.G.ACA.A..G.A.U.U.A.C.....G..C...G..A.A...A...A.A.A....GU..G....C....U.....C.GCAGUU.GCGG
   NC_004757.1       UC.G...U..G....A.G.G.A...A...A.U.....U.....C.A........G.....G.....U.C..GaU...G...A.A...A.C.U.G.-...-...-.-...-.--.-..-.-ccaagcug......................................gcuaaaac...-.C..A..G..U.U.U....G.cC..A....A.......C.C.......C...C...--..-..-.....G..C...A..U...........G..A....A...A..U..C...C..G.C..G.A....A..A.C.G.C.U.GGA.UCAA...UAUGUC.............................................................AU.UG.G.ACA.G..G.A.A.U.C.U.....G..C...A..A.A...A...A.A.A....AU..A....C....U.....U.UCCGUU.GCGG
   NC_005126.1       UC.G...C..G....A.A.G.A...A...A.U.....U.....A.A........A.....G.....A.G..C.U...U...G.U...A.C.C.A.C...A...U.C...G.UG.A..G.C.........................................................G.U..A..A..U.G.C....A..U..U....A.......C.C.......A...A...CG..C..C.....U..C...A..U...........G..A....A...A..U..U...C..G.U..C.A....G..C.A.U.U.U.GGA.UGAU...UAUGUG.............................................................AU.CG.G.CCA.G..G.A.A.A.C.G.....G..C...G..A.A...A...A.A.A....GU..G....U....U.....G.GCGGUU.GCUG
   NC_006361.1       CU.G...U..Gc..aA.C.G.A...G...A.U.....C.....A.U........C.....G.....A.G..G.A...G...G.A...G.C.U.C.-...-...-.-...-.--.-..-.-gccgaaucgagcg...........................aggucaagcucgac...-.G..A..G..C.U.G....C..C..C....A.......A.G.......C...C...CG..C..C.....G..-...-..-...........-..A....G...A..U..C...C..G.U..G.A....G..U.U.C.C.U.GGA.GAAC...UACGUG.............................................................AU.CG.G.CCA.G..G.A.C.G.C.C.....G..C...C..A.A...G...C.G.C....AC..G....C....U.....G.GCGGUC.GCGG
   NC_006510.1       CG.G...C..A....A.U.G.A...A...G.-.....-.....-.A........G.....G.....A.A..-.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-uuugaauu......................................uaaagacg...-.-..-..-..-.-.-....-..-..U....G.......C.C.......G...A...AA..C..C.....G..U...U..G...........G..A....A...A..U..U...C..G.G..G.A....A..A.U.U.C.U.AGA.UGAG...UACGUC.............................................................AU.CG.G.UCA.A..G.A.U.G.A.G.....G..C...G..A.A...A...A.A.A....UC..G....C....U.....C.GCCGUU.GCUG
   NC_006512.1       --.-...-..-....A.U.U.C...U...A.A.....A.....AgA........A.....G.....A.A..A.U...-...U.C...A.U.C.-.-...-...-.-...-.--.-..-.-aacugucuccgg..............................uuccggaucagg...-.-..-..A..U.G.A....G..U..U....G.......C.C.......U...G...UG..C..C.....A..A...A..A...........G..C....U...A..U..C...C..G.U..A.A....G..C.A.U.U.U.GGA.UGAC...UAUGUU.............................................................AU.UG.G.UCA.G..G.A.U.C.G.C.....G..C...C..A.A...A...A.A.G....GU..G....U....U.....G.UCGGUA.GCCG
   NC_006513.1       CC.G...C..G....A.C.G.A...G...A.U.....U.....G.C........C.....G.....A.A..A.C...C...G.U...C.GaC.G.C...G...G.A...A.GG.G..A.-c....................................................u..cG.C..A..C..G.A.C....G..U..U....G.......C.C.......U...A...CC..C..C.....G..C...A..G...........G..A....A...A..U..C...U..G.C..G.A....A..A.U.C.C.U.UAA.----...------ucaguaugugau....................................cgggcagaccca.--.--.-.---.G..G.-.C.C.A.A.....G..C...G..C.-...-...A.A.C....CU..G....U....C.....-.--GGUC.GCUG
   NC_006526.2       UC.G...C..G....A.G.G.A...A...A.C.....C.....A.G........A.....G.....G.C..G.C...U...U.U...-.-.-.G.C...A...U.AaagG.UG.A..C.G.........................................................G.C..A..G..C.G.U....-..-..-....G.......C.C.......G...A...CG..C..C.....A..C...A..G...........G..A....A...A..U..C...U..G.U..A.C....G..A.U.U.C.U.UGA.CCAA...UAUGUU.............................................................AU.CG.G.ACA.G..A.G.U.A.A.A.....G..C...C..A.A...G...C.G.G....GU..G....C....U.....U.UCUGUU.GCGG
   NC_007164.1       UU.G...U..A....A.C.G.A...G...A.U.....C.....A.U........C.....G.....A.A..G.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-aggaguugcuggcggucgau.............cccgcagagagcucggcgaag...-.-..-..-..-.-.-....-..C..U....G.......C.C.......G...A...AG..C..C.....C..G...C..G...........G..C....C...A..U..C...G..C.C..G.A....G..U.U.C.C.U.GGA.UAGC...UACGUG.............................................................AU.UG.G.UCA.G..G.A.C.G.A.G.....G..C...C..A.A...G...C.G.C....AC..C....C....U.....G.GCCGUU.GCCG
   NC_007205.1       CA.U...C..A....A.A.G.A...A...G.A.....A.....-.-........A.....G.....U.A..A.A...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-gacacguuuguua............................aacaucaugaugg...-.-..-..-..-.-.-....G..U..U....A.......C.C.......A...C...CG..C..C.....U..A...A..A...........G..A....A...A..U..U...U..G.U..G.C....U..G.U.A.U.U.AGA.UGAU...UAUGUU.............................................................AU.UG.G.GCA.G..C.C.U.C.A.C.....G..C...A..A.A...A...A.A.A....GU..U....U....U.....A.UCAGUU.GCUG
   NC_007406.1       UC.G...C..G....A.G.G.A...G...A.A.....C.....A.A........G.....U.....C.-..C.U...C...G.C...-.-.-.-.-...-...-.-...-.--.-..-.-uggugaa.......................................gucgcgcg...-.-..A..C..G.G.C....-..A..U....U.......C.C.......G...A...CG..C..C.....G..A...A..G...........G..A....G...A..U..C...U..G.C..A.A....G..G.U.C.C.U.GGA.CGAU...UACGUC.............................................................AU.CG.G.GCA.G..G.G.C.C.A.C.....G..C...C..A.A...G...A.A.G....GU..G....C....U.....U.UCGGUC.GCCG
   NC_007484.1       UC.G...C..G....A.G.G.A...A...A.U.....G.....C.A........G.....-.....-.G..A.U...A...G.G...C.U.C.U.C...C...U.C...C.GG.C..A.A.........................................................G.A..G.cA..G.C.C....A.uC..U....C.......C.C.......U...A...CA..C..C.....C..C...A..U...........G..A....A...A..U..U...A..G.G..G.A....U..A.U.C.C.U.GAA.CCAG...UAUGUU.............................................................AU.UG.G.UCA.A..A.A.U.C.A.U.....G..C...U..A.A...A...A.A.A....GU..A....C....U.....A.UCGGUA.GCUG
   NC_007614.1       UC.G...U..G....A.G.G.A...A...A.U.....A.....C.A........G.....G.....G.-..-.-...U...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-guggaggcggccaag.......................cucgcaaagucggacc...-.-..-..-..-.-.-....-..U..G....C.......C.U.......G...U...C-..C..C.....C..C...A..U...........G..A....A...A..U..U...C..G.A..C.A....G..A.U.C.C.U.GGA.UCAA...UACGUG.............................................................AU.CG.G.CCA.G..G.A.G.C.A.G.....G..C...G..A.A...G...A.A.A....AU..U....C....U.....G.UCGGUA.GCGG
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   NZ_LS483422.1     CC.G...C..G....A.A.G.A...A...A.U.....U.....A.A........A.....G.....A.A..C.U...U...A.C...G.C.C.A.C...A...U.C...G.UG.A..G.C.........................................................G.U..A..G..U.G.A....A..U..U....G.......C.C.......U...A...CA..C..C.....C..C...A..U...........G..A....A...A..U..C...A..G.A..C.A....G..C.A.C.C.U.UGA.UGAU...UAUGUA.............................................................AU.CG.G.UCA.A..G.A.A.A.A.A.....G..C...G..A.A...A...A.A.A....GU..U....U....U.....G.GCAGUG.GCUG
   NZ_LS483446.1     --.-...-..-....-.-.-.-...-...U.U.....U.....C.G........C.....A.....A.G..G.U...U...A.C...A.G.A.-.-...-...-.-...-.--.-..-.-guuugaugaugaugagcuugaa.........gaagaauuuuugccagaucgcau...-.-..-..C..U.U.U....A..C..U....C.......C.A.......A...A...GG..A..A.....-..-...-..C...........U..C....A...A..-..-...-..G.C..A.A....A..A.G.C.U.U.G-A.UGAU...UAUGUU.............................................................AU.CG.G.GCA.G..G.A.G.C.G.C.....G..C...C..A.A...A...A.A.A....GU..C....U....U.....U.UCCGUA.GCAA
   NZ_LS483470.1     UC.G...C..G....A.A.G.A...G...A.U.....U.....A.A........A.....G.....A.G..A.U...C...G.U...U.C.C.G.C...A...C.A...G.AG.A..G.C.........................................................G.C..A..A..U.U.C....A..C..U....G.......C.C.......G...A...CG..C..C.....G..C...A..C...........G..A....A...A..U..C...C..G.C..C.A....U..C.A.C.C.U.GGA.CGAU...UAUGUU.............................................................AU.CG.G.UCA.G..G.A.G.C.A.G.....G..C...G..A.A...A...A.A.G....GU..G....C....U.....G.GCGGUU.GCGG
   NZ_LS483476.1     GU.A...C..U....G.A.G.A...U...A.G.....U.....A.G........A.....A.....G.A..A.G...A...G.C...U.U.G.G.-...-...-.-...-.--.-..-.-uacggaagaa.................................gaaguugaguu...-.C..A..A..G.G.A....C..G..U....U.......C.C.......A...A...AA..C..C.....G..C...G..U...........G..A....A...A..U..U...C..G.A..G.A....G..A.U.C.U.U.AAA.GGAU...UACGUC.............................................................AU.UG.G.GCA.A..G.A.C.C.A.A.....G..C...A..A.A...A...A.A.A....UC..A....C....U.....G.GCAGUG.GCAG
   NZ_LS999205.1     CC.G...U..G....A.G.G.A...G...G.U.....G.....C.A........G.....G.....A.A..G.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-cacaggccgagag............................cagcgcgcauaaa...-.-..-..-..-.-.-....-..U..U....G.......C.C.......U...U...CG..C..C.....U..A...A..A...........G..A....A...A..U..C...A..G.C..G.G....C..A.U.C.CuU.GAU.CAGU...-ACGUG.............................................................AU.UG.G.UCA.G..G.A.G.C.G.U.....G..C...A..A.A...A...A.A.G....GU..U....C....U.....A.GCAGUA.GCGG
   NZ_LT594522.1     CA.G...C..G....A.A.G.A...U...-.-.....-.....A.U........A.....G.....A.A..A.U...U...A.C...U.C.G.U.A...-...-.-...G.UG.A..A.C.........................................................U.A..C..G..A.G.U....A..U..U....G.......C.C.......C...A...CG..C..C.....C..C...A..U...........G..A....A...A..U..C...A..A.U..A.A....A..U.A.U.U.U.AAA.UGAU...UAUGUU.............................................................AU.CG.G.UCA.G..G.A.U.A.A.A.....G..C...U..C.A...A...A.A.A....GU..A....C....U.....C.UCAGUA.GCUG
   NZ_LT605585.1     CC.G...U..G....A.G.G.A...A...A.A.....C.....A.A........A.....U.....C.-..-.-...-...-.-...-.C.U.C.C...A...U.G...G.UG.A..-.-agucg...........................................cgugag...G.G..-..-..-.-.-....A..G..U....G.......C.C.......G...A...CG..C..C.....G..C...A..G...........G..A....A...A..UcaU...G..G.C..-.-....C..G.U.C.C.U.UGA.CGAU...UACGUC.............................................................AU.UG.G.CCA.G..A.A.G.G.A.U.....G..C...C..A.A...G...C.G.C....GU..U....C....U.....G.UCGGUU.GCGG
   NZ_LT615228.1     UU.G...C..A....A.A.A.C...U..uC.C.....U.....A.A........A.....G.....A.A..G.A...G...G.G...-.-.-.-.-...-...-.-...-.--.-..-.-cga...............................................ugag...-.-..-..-..-.U.C....U..U..U....A.......C.C.......G...A...CC..C..C.....A..C...A..U...........C..A....G...A..U..U...C..G.A..G.A....A..A.A.U.U.U.AGA.UCAA...UACGUU.............................................................AU.CG.G.GCA.A..G.A.U.C.A.U.....G..C...C..A.A...A...A.A.A....AC..U....U....U.....G.GCUGUA.GCGG
   NZ_LT615367.1     UC.G...C..G....A.A.G.A...A...A.U.....C.....A.A........A.....G.....A.A..G.U...A...G.C...G.C.C.A.C...A...C.C...G.UG.A..G.C.........................................................G.U..A..G..C.G.C....G..U..U....G.......C.C.......G...A...CG..C..C.....G..C...A..U...........G..A....A...A..U..U...C..G.C..C.G....U..C.A.U.C.U.GGA.UGAU...UAUGUC.............................................................AU.CG.G.UCA.G..G.A.G.C.C.G.....G..C...G..A.A...A...A.A.G....GU..A....U....U.....G.GCGGUU.GCGG
   NZ_LT629973.1     CG.G...C..G....G.C.C.A...A...-.-.....-.....C.C........A.....G.....C.C..G.U...C...C.G...G.C.C.-.-...-...-.-...-.--.-..-.-ucgccaucgagcaga.......................uggaacuuuccgaccu...-.-..-..G..C.C.G....A..C..G....C.......C.C.......G...A...AC..A..G.....-..-...-..-...........-..-....-...C..U..C...C..G.C..A.A....G..G.A.A.C.U.GGA.CAGC...UACGUC.............................................................AU.CG.G.UCA.G..G.A.C.C.U.C.....G..C...C..A.A...A...A.A.A....AC..C....C....U.....U.UGUGUC.GCCG
   NZ_LT632322.1     GU.G...C..G....A.A.G.A...A...A.G.....A.....A.A........A.....G.....G.C..G.A...U...C.-...-.-.-.-.-...-...-.-...-.--.-..-.-aa..................................................ac...-.-..-..-..-.-.G....U..C..G....A.......C.U.......G...C...CC..A..C.....G..C...C..C...........G..A....Ag.aG..A..U...C..A.A..A.C....G..G.G.CgC.U.GGA.UGAU...UAUGUG.............................................................AU.UG.A.GCA.G..G.A.A.C.A.G.....G..C...G..A.A...A...A.A.A....GU..G....C....U.....G.UCGGUG.GCGG
   NZ_LT855380.1     CC.G...C..G....A.G.G.A...G...G.U.....G.....C.A........G.....G.....A.A..G.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-cacaggccgaaag............................cagcgcgcauaaa...-.-..-..-..-.-.-....-..U..U....G.......C.C.......U...U...CG..C..C.....C..A...A..A...........G..A....A...A..U..C...A..G.C..G.G....C..A.U.C.C.U.UGA.CCAG...UACGUG.............................................................AU.UG.G.UCA.G..G.A.A.C.G.U.....G..C...C..A.A...A...A.A.G....GU..U....C....U.....C.GCGGUA.GCGG
   NZ_LT897836.1     CC.G...C..G....A.A.G.A...A...A.U.....A.....A.A........A.....G.....A.A..A.U...A...U.C...G.C.U.G.G...G...C.C...G.UG.A..A.U.........................................................C.U..A..A..U.U.C....A..A..U....G.......C.C.......G...A...CG..C..C.....A..C...A..U...........G..A....G...A..U..C...C..G.U..C.A....C..C.A.C.U.U.GGA.CGAU...UAUGUC.............................................................AU.CG.A.UCA.G..G.A.A.A.A.A.....G..C...C..A.A...A...A.A.A....GU..A....C....U.....A.GCAGUU.GCUG
   NZ_LT906435.1     UC.G...C..G....A.C.G.A...G...G.C.....C.....G.C........A.....G.....C.G..G.C...U...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-gaagacgagagcggca.....................guggcgcuaaguccgau...-.-..-..-..-.-.-....-..C..U....G.......C.C.......G...U...CC..C..C.....G..C...A..G...........G..A....A...A..U..U...C..G.C..G.A....G..A.G.U.C.UcGAU.CAAU...-AUGUG.............................................................AU.CG.G.UCA.G..G.A.C.C.G.G.....G..C...C..A.A...G...A.A.G....AU..U....C....U.....G.GCUGUU.GCGG
   NZ_LT906439.1     UC.G...U..G....A.A.G.A...G...A.U.....G.....G.C........U.....G.....A.G..G.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-aaguccuugcaga............................ccugucugaaguc...-.-..-..-..-.-.-....-..C..C....A.......A.A.......A...C...CG..C..-.....A..A...G..A...........A..U....U...G..U..U...G..A.C..G.A....U..-.-.U.C.U.GGA.CAAC...UACGUU.............................................................AU.UG.G.ACA.G..G.A.C.A.A.G.....G..C...C..A.A...A...C.G.U....AC..U....U....U.....G.GCAGUU.GCUG
   NZ_LT906444.1     UU.G...U..A....A.U.G.A...A...A.U.....U.....A.U........U.....G.....A.A..-.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-gaagagcuagguauuucuga..............auuuguugauuuuggagaag...-.-..-..-..-.-.-....-..-..U....A.......C.C.......A...A...AA..C..C.....A..C...A..A...........G..A....A...A..U..U...C..G.U..C.A....U..A.U.A.U.U.AAG.UGAU...UAUGUU.............................................................AU.UG.G.UCA.A..G.A.G.C.G.U.....G..C...A..A.A...A...A.A.A....GC..A....C....U.....A.GCUGUG.GCAG
   NZ_LT906445.1     --.-...-..-....-.U.G.C...G...G.U.....U.....G.-........A.....G.....A.C..G.G...A...C.G...A.C.U.U.C...A...A.U...U.UA.A..A.A.........................................................G.A..A..-..U.U.G....C..C..A....A.......-.-.......-...-...CG..C..C.....U..A...G..A...........G..A....A...A..U..U...A..A.A..G.C....U..C.A.U.C.U.UGA.CGAA...UAUGUC.............................................................AU.UG.G.UCA.A..G.A.U.G.A.U.....G..C...U..A.A...A...A.U.C....UC..U....U....U.....A.GCUGUG.GCCG
   NZ_LT906448.1     AU.G...C..U....G.U.U.A...U...-.C.....U.....G.A........A.....G.....A.A..G.U...U...U.-...-.-.-.-.-...-...-.-...-.--.-..-.-cagaaacaccagaagugg..................aggggcaagaagaacaaa...-.-..-..-..-.-.A....A..C..U....G.......C.C.......U...A...CA..C..C.....A..C...A..C...........G..A....A...A..U..U...C..G.U..G.C....G..C.A.U.U.U.AGA.UGAU...UAUGUG.............................................................AU.UG.G.UCA.A..G.A.U.U.A.U.....G..C...U..A.A...A...A.A.A....GU..G....U....U.....A.UCGGUU.GCAG
   NZ_LT906451.1     UC.G...C..G....A.A.G.A...A...A.C.....U.....C.A........G.....G.....A.A..A.G...C..cA.G...G.A.G.G.A...A...A.C...G.GA.G..A.C.........................................................U.C..G..-..-.-.-....U..U..U....A.......C.C.......U...A...C-..-..-.....G..C...C..U...........A..Aa..gA...A..A..U...C..G.C.cA.A....U..U.U.U.U.U.AGA.CGAA...UACGUG.............................................................AU.UG.G.ACA.A..C.U.A.C.A.U.....G..C...G..A.A...G...A.A.A....GU..G....C....U.....U.UCUGUG.GCAG
   NZ_LT906470.1     UU.G...C..C....G.A.U.G...A...A.C.....U.....G.G........G.....U.....-.-..-.-...G...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-acaucgaaucggau..........................uucgaauugcaaga...-.-..-..-..-.-.-....A..U..U....G.......C.C.......G...A...CG..C..C.....A..A...G..A...........G..A....A...A..U..A...A..A.A..G.C....U..C.A.U.C.U.UGA.CGAA...UAUGUC.............................................................AU.CG.G.UCA.G..G.A.U.G.A.U.....G..C...G..A.A...A...A.U.U....UC..U....U....U.....A.GCUGUG.GCUG
   NZ_LT906479.1     UC.G...C..G....A.A.G.A...G...A.U.....U.....A.A........A.....G.....A.A..G.U...U...G.C...C.C.C.G.C...A...U.C...G.UG.A..G.C.........................................................G.C..A..G..U.G.C....G..C..U....G.......C.C.......G...A...CG..C..C.....G..C...A..C...........G..A....A...A..U..C...C..G.C..C.A....U..C.A.C.C.U.GGA.UGAC...UACGUC.............................................................AU.UG.G.CCA.G..G.A.G.C.A.G.....G..C...G..A.A...G...A.A.A....GU..G....C....U.....G.GCGGUU.GCGG
   NZ_LT906481.1     --.-...-..-....-.-.-.-...-...-.-.....-.....-.-........-.....-.....-.-..-.-...-...-.C...U.C.U.G.C...A...A.C...G.AG.A..-.-ucaucgaggaagagcuggua..............gccaccagcgcgcaggaacc...G.C..A..G..G.G.Ca..aG..C..U....G.......C.C.......A...A...CG..C..C.....G..U...C..C...........G..A....G...A..U..U...U..C.C..G.C....U..U.U.C.C.U.GGA.CAAG...UACGUC.............................................................AU.CG.G.CCA.G..G.A.C.G.A.C.....G..C...G..A.A...G...C.G.A....AC..C....C....U.....C.GCGGUG.GCUG
   NZ_LT960614.1     CC.G...U..G....A.G.G.A...G...U.C.....G.....-.-........-.....-.....-.A..A.G...U...C.C...A.-.-.-.-...-...-.-...-.--.-..-.-aucucguga...................................aaucacgcga...-.-..-..-..U.G.G....C..G..U....G.......C.C.......G...A...CG..C..C.....G..G...G..U...........G..A....A...A..U..C...C..G.C..G.C....U..G.U.G.C.U.GGA.CGAC...UAUGUC.............................................................AU.CG.G.GCA.G..C.A.G.C.A.G.....G..C...C..A.A...G...A.A.G....GU..U....C....U.....G.UCGGUC.GCGG
   NZ_LT985188.1     CU.G...C..A....A.C.G.A...G...A.U.....C.....A.U........C.....G.....A.A..G.A...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-ggaguucuccgaggccgcu...............gaugucggccugcucgacga...-.-..-..-..-.-.-....U..C..U....G.......C.C.......C...A...AG..C..C.....G..C...G..U...........G..A....G...A..U..C...U..G.C..U.C....C..U.U.C.C.U.CGA.CUCG...UACGUG.............................................................AU.CG.G.CCA.A..G.A.C.G.U.C.....G..C...C..A.A...G...A.A.G....GC..G....C....U.....G.UCGGUG.GCCG
   NZ_OU015521.1     UC.G...U..G....A.A.G.A...AgaaA.U.....U.....A.C........-.....-.....-.-..-.-...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-ucgagcuguugag...........................guucaaaaaaaacu...-.-..-..-..-.-.-....-..-..-....U.......C.C.......A...-...--..-..-.....A..C...A..Ccg......ucgG..A....A...A..U..U...G..A.U..C.A....A..U.U.A.U.U.GAA.UGAA...UACGUC.............................................................AU.UG.G.UCA.A..G.A.C.U.U.U.....G..C...C..A.A...G...A.A.A....GU..G....U....U.....A.UCUGUC.GCUG
   NZ_OU015584.1     UG.G...U..C....A.U.C.U...U...G.U.....A.....A.A........A.....G.....A.A..G.A...U...G.C...U.-.-.G.A...-...-.-...-.--.-..-.-gaaa.............................................aauau...U.C..A..-..-.-.-....A..C..U....G.......A.U.......U...A...AG..C..C.....A..G...U..U...........G..A....A...A..U..U...C..U.A..A.A....U..C.A.U.U.U.GAA.UGAA...UUUGUC.............................................................AU.CG.G.UCA.G..G.A.U.G.A.G.....G..C...U..A.A...G...A.A.A....GU..C....U....U.....G.UCUGUU.GCCG
   NZ_OU594967.1     CC.G...C..G....A.A.G.A...G...A.U.....C.....A.A........A.....G.....A.U..A.U...U...U.C...A.C.C.U.A...A...G.C...A.UG.A..A.A.........................................................A.U..G..G..G.G.C....U..U..U....A.......C.C.......U...G...UA..C..C.....G..A...A..A...........G..A....G...A..U..C...C..G.A..U.C....U..C.A.U.U.U.AGA.UGAG...UAUGUU.............................................................AU.CG.G.UCA.A..G.A.U.C.A.G.....G..C...A..A.A...A...A.A.A....GU..C....C....U.....C.UCUGUC.GCAG
   NZ_OU907312.1     UC.A...U..G....A.G.C.A...A...U.C.....U.....A.A........A.....A.....A.A..G.U...-...-.-...-.-.-.-.-...-...-.-...-.--.-..-.-gauggcgccguca...........................cgcagucaugaucc...-.-..-..-..-.-.-....A..U..U....G.......C.C.......C...A...CC..C..C.....A..C...A..A...........A..U....G...A..U..U...U..G.C..C.G....C..C.A.U.C.U.UGA.UGAC...UAUGUU.............................................................AU.UG.G.CCA.A..G.A.G.C.A.U.....G..C...U..A.A...A...A.A.A....GU..G....U....U.....G.GCGGUC.GCUG
   NZ_OW485601.1     UC.G...C..G....A.G.G.A...G...C.A.....C.....A.A........-.....G.....-.A..C.G...C...A.C...C.U.C.G.U...G...A.-...-.--.-..-.-agu...............................................cgcg...-.C..G..A..C.G.G....C..G..U....G.......C.C.......U...A...CG..C..C.....G..A...A..G...........G..A....G...A..U..C...U..G.C..A.A....G..G.U.C.C.U.CGA.CGAC...UACGUG.............................................................AU.CG.G.CCA.G..A.U.G.C.A.C.....G..C...C..A.A...G...C.G.C....GU..G....C....U.....G.UCCGUG.GCGG


   Structure         ((.(...(..(....(....................................................(..(.(.......(.(...(.(...(.(.................................................................................).).....)..).).)....)..)..)..............................((..(..(.....(..(...(..(..........................(..(...(..(.(................(.(.(.((..((((......................................................................)).))...))).)..)...............)..)...)..).)................))..)....)..........).))).)).))))


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clpP-clpX-lon



Position: 1010-1124, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y G Y R A G A R R Y C C R C C R G A R A U Y R R Y Y U R A Y R A U A Y G U A U Y G G Y C A G G A R G C A A R R R R R Y Y U C G U G C G 5'