bipA



Position: 1488-1653, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.C) Reactivity: 0.5C Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.C) Reactivity: 1C Position: 46 (position.label in template: 46.A) Reactivity: 0.5A Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.C) Reactivity: 1C Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.A) Reactivity: 1A Position: 58 (position.label in template: 58.A) Reactivity: 0.5A Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.C) Reactivity: 0.5C Position: 61 (position.label in template: 61.U) Reactivity: nanU Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.C) Reactivity: 0.5C Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.A) Reactivity: 1A Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.A) Reactivity: 1A Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 1A Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.A) Reactivity: 1A Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.A) Reactivity: 1A Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.A) Reactivity: 0.5A Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.A) Reactivity: 0.5A Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 1A Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.C) Reactivity: 1C Position: 112 (position.label in template: 112.A) Reactivity: 0.5A Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.A) Reactivity: 1A Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.C) Reactivity: 1C Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.A) Reactivity: 0.5A Position: 124 (position.label in template: 124.A) Reactivity: 1A Position: 125 (position.label in template: 125.C) Reactivity: 0C Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.A) Reactivity: 0A Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.C) Reactivity: 0C Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.A) Reactivity: 1A Position: 133 (position.label in template: 133.C) Reactivity: 0.5C Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.A) Reactivity: 0A Position: 138 (position.label in template: 138.A) Reactivity: 0A Position: 139 (position.label in template: 139.A) Reactivity: 0A Position: 140 (position.label in template: 140.C) Reactivity: 0C Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.C) Reactivity: 0.5C Position: 144 (position.label in template: 144.C) Reactivity: 0C Position: 145 (position.label in template: 145.U) Reactivity: nanU Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.A) Reactivity: 0A Position: 148 (position.label in template: 148.C) Reactivity: 0C Position: 149 (position.label in template: 149.C) Reactivity: 0C Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.A) Reactivity: 0.5A Position: 154 (position.label in template: 154.A) Reactivity: 0.5A Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.A) Reactivity: 0.5A Position: 157 (position.label in template: 157.A) Reactivity: 0.5A Position: 158 (position.label in template: 158.A) Reactivity: 0.5A Position: 159 (position.label in template: 159.C) Reactivity: 0.5C Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.G) Reactivity: nanG Position: 162 (position.label in template: 162.A) Reactivity: 0.5A Position: 163 (position.label in template: 163.C) Reactivity: 0C Position: 164 (position.label in template: 164.C) Reactivity: 0C Position: 165 (position.label in template: 165.A) Reactivity: 0A Position: 166 (position.label in template: 166.A) Reactivity: 0.5A Position: 167 (position.label in template: 167.C) Reactivity: 0C Position: 168 (position.label in template: 168.A) Reactivity: 0A Position: 169 (position.label in template: 169.U) Reactivity: nanU Position: 170 (position.label in template: 170.G) Reactivity: nanG Position: 171 (position.label in template: 171.C) Reactivity: nanC Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.U) Reactivity: nanU Position: 174 (position.label in template: 174.G) Reactivity: nanG Position: 175 (position.label in template: 175.C) Reactivity: nanC Position: 176 (position.label in template: 176.U) Reactivity: nanU Position: 177 (position.label in template: 177.U) Reactivity: nanU Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.C) Reactivity: nanC Position: 180 (position.label in template: 180.G) Reactivity: nanG Position: 181 (position.label in template: 181.G) Reactivity: nanG Position: 182 (position.label in template: 182.U) Reactivity: nanU Position: 183 (position.label in template: 183.A) Reactivity: nanA Position: 184 (position.label in template: 184.C) Reactivity: nanC Position: 185 (position.label in template: 185.U) Reactivity: nanU Position: 186 (position.label in template: 186.G) Reactivity: nanG Position: 187 (position.label in template: 187.A) Reactivity: nanA Position: 188 (position.label in template: 188.C) Reactivity: nanC Position: 189 (position.label in template: 189.G) Reactivity: nanG Position: 190 (position.label in template: 190.A) Reactivity: nanA Position: 191 (position.label in template: 191.A) Reactivity: nanA Position: 192 (position.label in template: 192.G) Reactivity: nanG Position: 193 (position.label in template: 193.C) Reactivity: nanC Position: 194 (position.label in template: 194.C) Reactivity: nanC Position: 195 (position.label in template: 195.G) Reactivity: nanG Position: 196 (position.label in template: 196.U) Reactivity: nanU Position: 197 (position.label in template: 197.U) Reactivity: nanU Position: 198 (position.label in template: 198.G) Reactivity: nanG Position: 199 (position.label in template: 199.U) Reactivity: nanU Position: 200 (position.label in template: 200.U) Reactivity: nanU Position: 201 (position.label in template: 201.C) Reactivity: nanC Position: 202 (position.label in template: 202.U) Reactivity: nanU Position: 203 (position.label in template: 203.G) Reactivity: nanG Position: 204 (position.label in template: 204.G) Reactivity: nanG Position: 205 (position.label in template: 205.U) Reactivity: nanU Position: 206 (position.label in template: 206.U) Reactivity: nanU Position: 207 (position.label in template: 207.3')3' 10 20 30 50 100 150 200


bipA



Position: 1488-1653, Conformation: #0







Retained alignments:


   NC_003910.7       C.-.-..-.-.A..G..G....-....U...A....A.A..G....CA..U.U.A.A............................................-..-.CU....A..A.C..G..C...U..A....U......C.U..-.-.....-...---.......-...----...----..-----uuaacuuacaaucucgug....................................gucguauguuaaucggac--.--.--..-..-.-.....-.-.-...--.A...C..G.GU.G.U.......U...G....A..U.A...UU.U.A..UG.AA.GGUC.A.AGUUAUUGGU...A...UUCAUA....................GCCGC.G..AUAA.CG.A.UU.U....A.AC..AGU..AAA.U.G..C...C.C.U.U.A.A..A...G...G...U...AAGCAGU...UAACUA...ACG...UUCG...UUCAUC..AGGUACUGAU....................................G.A..A...G.C.......A..CA.A.A.C.A.U......U.A.AC
   NC_003911.12      C.-.-..-.-.G..G..C....C....A...G....U.C..-....-G..G.U.C.G..........................................ccU..A.UG....C..G.C..U..G...U..G....G......A.A..C.C.....U...CG-.......-...AAGA...GCGC..GGCC-........................................................................GCaUG.UU..C..A.U.....C.G.G...-C.C...C..G.CA.GaC.......C...G....A..U.G...UC.U.A..CG.AG.GGCA.U.GAUCAUCGGC...G...AACACA....................GCCGC.G..ACAA.CG.A.CC.U....G.GA..AGU..GAA.C.C..C...G.C.U.C.A.A..G...G...G...C...AAGAAAC...UGACCA...ACG...UGCG...CGCCUC..GGGCACCGAU....................................G.A..C...G.C.......G..GU.G.C.G.U.C......U.G.AC
   NC_004311.2       C.G.A..U.C.A..G..G....G....U...G....A.A..G....CU..G.U.G.G............................................C..U.UA....C..G.C..G..C...U..G....U......U.C.aA.C.....C...UUG.......-...AAGA...UCGC..GGCCC........................................................................GA.UG.AU..U..A.U.....C.G.A...GG.C...U..G.GC.G.U.......C...A....A..G.G...UC.U.A..UC.AG.GGCA.U.GUUGAUCGGC...A...UCCAUA....................GCCGU.G..ACAA.CG.A.UC.U....G.GA..AGU..GAA.U.G..U...G.C.U.C.A.A..G...G...G...C...AAGAAGC...UCACCA...AUA...UCCG...CGCCGC..CGGCAAGGAU....................................G.A..A...G.C.......C..GU.G.A.A.G.C......U.U.A-
   NC_004347.2       C.G.C..A.A.C..G..G....G....U...A....A.G..G....CG..C.U.G.A............................................C..A.UU....C..G.C..A..C...U..G....U......U.C..G.G.....U...CUA.......C...AGGA...CCGC..GGUCG........................................................................UC.UG.UU..U..A.U.....U.G.G...CC.A...C..G.CU.G.C.......U...G....A..A.G...UU.U.A..CG.AA.GGUC.A.AGUUGUGGGU...A...UUCAUG....................CUCGU.U..CAAA.CG.A.UC.U....G.AC..AGU..UAA.C.U..G...U.C.U.G.A.A..A...G...G...U...AAGCAGC...UGACUA...ACA...UGCG...UGCUUC..UGGUACUGAC....................................G.A..A...G.C.......U..CA.G.G.U.U.C......U.G.AC
   NC_004556.1       U.G.G..U.C.A..U..G....G....C...A....A.A..G....CA..C.C.U.G............................................G..G.UA....C..G.C..U..U...U..G....A......U.G..G.G.....U...UUG.......C...AAGA...ACGU..GGGCG........................................................................UU.UG.UU..G..A.U.....U.G.A...UG.C...U..G.GU.G.A.......G...G....A..U.A...UU.U.A..CG.AA.GG-C.A.UGUUAGUUGG..cA...UCCAUU....................CCAAG.G..AUAA.UG.A.CC.U....G.AC..CGU..CAA.U.G..C..aC.U.U.C.G.-..C...G...A...G...AAGCAAU...UGACAA...AUA...UUCG...UGCUUC..UGGGAAGGAC....................................G.A..C...G.C.......-..AA.U.C.U.C.A......U.U.GA
   NC_004578.1       -.U.C..U.G.G..U..U....U....C...G....G.U..-....--..-.-.-.-ugcuaccggca...................aggcacugaccu..-..-.-A....C..U.C..C..C...U..G....G......A.A..A.C.....A...CUG.......C...AAGC...CCGU..GGCAA........................................................................GC.UG.UU..C..C.U.....G.G.G...UC.A...U..G.GC.G.A.......A...G....A..U.G...UG.U.A..CG.AA.GGUC.A.GAUCGUCGGC...A...UCAACA....................GCCGC.G..ACAA.CG.A.CC.U....G.GG..UGU..AAA.C.C..C...A.A.C.C.A.A..G...G...G...C...AAGAAGC...UCGACA...ACA...UGCG...UGCUUC..CGGUAAAGAC....................................G.A..A...A.C.......C..AU.C.G.C.U.C......U.G.GU
   NC_004603.1       C.-.-..G.C.A..G..Cu..gG....U...A....A.A..G....CA..C.U.A.A............................................C..G.AA....C..G.C..A..C...U..G....U......U.C..A.A.....C...CUU.......C...AAGA...GCGU..GGUCG........................................................................UC.UA.UU..C..A.U.....C.G.G...UC.A...C..G.GU.G.U.......A...G....A..A.G...UU.U.A..CG.AA.GGCA.U.GGUUAUCGGU...A...UUCACA....................GCCGC.G..ACAA.UG.A.CC.U....A.AC..AGU..AAA.C.G..C...A.C.U.G.A.A..A...G...G...U...AAGCAGC...UAACCA...ACG...UUCG...UGCAUC..UGGUACAGAU....................................G.A..C...G.C.......A..CA.G.G.U.U.C......-.-.--
   NC_004757.1       -.-.-..A.A.U..G..G....G....C...G....A.G..G....CG..G.U.G.G............................................C..C.UA....C..G.C..G..C...U..G....U......G.G..A.A.....G...CUG.......C...AGGA...ACGC..GGACG........................................................................UA.UG.UU..C..G.U.....C.A.G...CC.C...C..G.GA.G.A.......G...C....C..A.U...UG.U.A..UG.AA.GGCA.U.GGUGAUUGGU...A...UCCACA....................GCCGU.G..AGAA.UG.A.UC.U....G.GU..UGU..UAA.C.C..C...G.A.U.C.A.A..G...G...G...C...AAGCAAC...UGACCA...AUA...UCCG...GGCAUC..CGGCCAUGAC....................................G.A..G...G.C.......A..GU.G.G.U.G.C......U.G.AC
   NC_005027.1       C.U.C..G.A.U..G..G....U....U...-....-.G..G....CG..G.U.-.-aaaacca............................ugccauu..C..G.CC....C..-.-..-..-...U..G....U......U.C..G.C.....U...UUG.......C...AGGA...UCGG..GCUGA........................................................................GC.UG.UU..C..G.UuccgcC.G.A...GC.A...C..-.--.-.-.......C...G....A..G.G...UU.U.A..CG.AA.GGAA.U.GAUCGUUGGC...G...AAAACG....................CUCGC.G..AAAA.CG.A.CA.U....G.AC..AGU..GAA.C.C..C...C.U.G.U.C.G..C...G...A...A...AAGAAGC...UGACCA...AUA...UGCG...UGCUAG..CGGCAGUGAU....................................G.A..A...A.A.......C..GU.C.A.U.C.C......U.G.AA
   NC_005126.1       U.G.G..U.C.A..G..G....G....U...A....A.A..G....CA..G.U.U.G............................................C..U.UA....U..G.C..A..C...U..U....U......A.C..A.G.....C...UUA.......C...AGGA...GCGC..GGUAA........................................................................GU.UA.UU..C..C.U.....U.G.G...UC.A...U..G.GU.G.C.......A...G....A..A.G...UG.U.A..UG.AA.GGUC.A.AGUGAUCGGU...A...UUCAUU....................CUCGU.U..CUAA.UG.A.CC.U....G.AC..AGU..UAA.C.U..G...U.C.U.G.A.C..A...G...G...U...AAGAAAC...UGACUA...ACG...UCCG...UGCAUC..UGGUACUGAC....................................G.A..A...G.C.......-..GA.C.A.A.C.C......C.U.GU
   NC_006138.1       C.C.-..-.-.-..-..U....G....U...G....U.A..G....CC..G.U.A.G............................................C..C.UU....C..G.C..A..C...U..C....U......U.C..A.A.....C...CUU.......C...AGGA...UCGU..GGUUA........................................................................CC.UUaUU..G..U.U.....A.A.G...C-.C...G..G.GC.G.A.......U...C....C..C.C...UU.U.A..UG.CG.GGAC.A.GAUUGUUGGU...G...AGCAUG....................CUCGU.G..CAGC.UG.A.UU.U....G.GU..UGU..UAA.C.C..C...A.G.C.U.A.A..G...G...G...C...AAGAAAC...UUACCA...AUA...UGCG...UGCCUC..UGGUUCCGAU....................................G.A..A...G.C.......C..GU.U.A.U.U.C......U.U.GU
   NC_006300.1       C.GcU..A.C.C..G..G....-....U...-....A.A..A....GC..U.C.U.G............................................G..C.UU....A..U.G..C..U...U..U....A......U.G.gG.G.....U...UUA.......C...AGGA...ACGC..GGUAA........................................................................AU.UA.AU..G..G.C.....G.G.A...AC.A...C..G.GU.C.A.......G...G....A..A.G...UG.U.A..CG.AA.GGUC.A.GAUUAUCGGU...A...UUCACA....................GCCGG.A..CUAA.CG.A.CU.U....A.AC..GGU..AAA.C.U..G...C.C.U.G.C.A..A...G...G...U...AAAAAAU...UAACCA...AUA...UGCG...CGCCUC..CGGUAAAGAC....................................G.A..C...G.C.......C..AU.U.C.A.G.U......U.G.AC
   NC_006512.1       U.G.C..U.C.A..G..G....G....U...A....A.A..G....CU..C.U.G.A............................................C..U.UA....C..U.C..A..C...U..G....U......U.U..A.A.....C...CUG.......C...AGGA...GCGC..GGUAA........................................................................GU.UA.UUugC..A.U.....C.A.C...--.A...C..G.GU.G.A.......U...G....A..A.G...UU.U.A..UG.AA.GGCC.A.GAUCAUCGGU...A...UUCAUA....................ACCGU.U..CAAA.CG.A.CC.U....G.AC..AGU..AAA.C.U..G...C.C.U.G.A.A..A...G...G...U...AAACAGC...UGACUA...ACG...UACG...CGCUUC..UGGUACUGAC....................................G.A..A...G.C......aC..AG.A.C.C.U.U......A.A.GU
   NC_006513.1       C.-.-..-.A.A..C..G....G....C...C....A.C..G....CG..G.U.C.G............................................C..C.UA....U..G.C..G..C...U..G....U......G.G..A.A.....G...CUG.......C...AGGA...UCGC..GGCCG........................................................................GA.UG.UU..C..C.U.....C.A.C...GC.A...C..A.AC.G.A.......U...C....C..C.G...UG.U.A..CG.AA.GGCA.U.CAUCAUCGGC...G...UGCAUU....................CGCGC.G..ACAA.CG.A.UC.U....C.GU..CGU..CAA.U.-..C...C.G.A.UcA.A..G...G...G...C...AAGCAGC...UUACCA...ACG...UGCG...CUCGUC..GGGUACCGAC....................................G.A..A...G.C.......C..GU.G.C.G.G.C......U.G.AU
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   NZ_LT906448.1     C.A.G..G.U.A..A..A....G....C...A....U.U..A....--..-.-.-.G............................................C..U.UA....U..G.C..G..U...U..A....U......U.C..G.G.....U...UUA.......C...AAGA...ACGU..GGUAA........................................................................AU.UA.AU..G..A.U.....U.G.A...UC.A...U..G.GU.G.C.......U...G....A..A.G...UG.U.A..UG.AA.GGUC.A.AAUCAUUGGU...A...UUCACA....................GUCGU.U..CAAA.UG.A.CU.U....A.AC..UGU..AAA.C.U..G...U.U.U.A.C.A..A...G...G...U...AAAAAAU...UGACCA...AUA...UGCG...AGCAUC..AGGUAAGGAU....................................G.A..A...G.C.......U..GU.U.G.U.G.U......U.G.GU
   NZ_LT906463.1     C.C.G..G.U.A..A..A....G....C...U....U.U..G....GC..U.U.A.U............................................G..C.CC....U..-.-..-..-...-..A....U......U.U..G.G.....C...UUG.......C...AGGA...ACGU..GGUAA........................................................................AU.UG.AU..G..A.U.....C.G.A...UG.C...C..A.AC.G.U.......A...G....A..A.G...UU.U.A..UG.AA.GGUC.A.AAUCAUCGGU...A...UUCACA....................GCCGU.A..CAAA.CG.A.CU.U....A.AC..GGU..AAA.C.U..G...U.U.U.A.C.A..A...G...G...U...AAAAAGC...UCACCA...AUA...UGCG...UGCAUC..CGGUAAAGAC....................................G.A..U...G.C.......U..AU.U.G.U.A.U......U.A.AC
   NZ_LT906479.1     C.G.G..U.C.A..G..G....G....U...A....A.A..G....CG..G.U.A.G............................................C..G.UU....C..G.C..C..C...U..G....U......A.C..G.G.....U...CUG.......C...AAGA...UCGC..GGCAA........................................................................GC.UG.UU..C..C.U.....C.G.G...CC.A...C..G.GC.G.C.......G...G....A..A.G...UG.U.A..UG.AA.GGCC.A.GAUCAUCGGU...A...UUCACU....................CACGC.U..CCAA.CG.A.CC.U....G.AC..CGU..GAA.C.U..G...C.C.U.G.A.C..C...G...G...C...AAGAAAC...UGACCA...ACA...UGCG...UGCUUC..CGGUACCGAC....................................G.A..A...G.C.......G..AC.U.A.C.C.C......U.G.GU
   NZ_LT907988.1     C.A.-..-.-.A..C..G....G....C...G....A.U..G....C-..-.-.-.-............................................-..-.--....C..G.U..G..G...C..C....U......A.C..G.C.....G...CUG.......U...GG--...----..-----aagcugcaggaucgcg........................................gccgcauguucgugaa--.--.--..-..C.C.....C.G.G...GC.G...A..G.C-.-.-.......-...-....-..C.G...CU.G.U..AC.GA.GGGCaU.GAUCAUCGGC...A...UCCACA....................GCCGU.G..ACAA.CG.A.CC.U....G.GU..GGU..CAA.C.C..C...C.A.U.C.A.A..G...G...G...C...AAGCAGC...UGACCA...ACG...UGCG...CGCCUC..GGGCACCGAC....................................G.A..A...G.C.......C..GU.G.C.G.C.C......U.G.GU
   NZ_OU015430.1     C.G.G..C.A.C..C..G....G....U...C....C.G..U....CG..C.C.G.G............................................C..G.UA....C..G.C..G..C...A..G....A......U.C..G.C.....G...AUG.......C...AGGA...ACGC..GGCCG........................................................................GC.UG.UU..U..A.U.....C.G.A...GC.C...G..G.GC.G.A.......G...G....A..G.A...UC.U.A..CG.AG.GGCC.A.GAUCGUCGGC...A...UCAACU....................CCAAG.G..ACAA.CG.A.CC.U....G.AC..CGU..CAA.U.G..C...C.C.-.U.G.C.gC...G...G...C...AAGCAGC...UGACCA...ACU...UCCG...UGCCUC..CGGCACCGAC....................................A.A..G...G.A.......C..GA.A.G.G.G.C......U.G.AU
   NZ_OU594967.1     C.U.-..-.-.-..G..G....G....A...A....A.-..G....CU..C.U.U.A............................................C..G.UA....U..U.C..A..U...U..G....U......U.U..A.A.....C...UUA.......C...AAGA...UCGU..GGUCG........................................................................GU.UA.UU..U..A.U.....U.U.C...UC.A...C..G.GC.U.C.......U...G....A..A.G...UU.U.A..UG.AA.GGCC.A.AGUGAUUGGU...A...UUCAUA....................ACCGU.G..AAAA.UG.A.CC.U....C.AC..UGU..AAA.C.U..G...U.C.U.G.A.A..A...G...G...U...AAGCAGC...UGACGA...ACG...UUCG...UGCUUC..UGGUACUGAU....................................G.A..A...G.C.......A..CA.A.G.U.G.C......U.G.AC
   NZ_OU907312.1     C.-.-..-.-.A..G..G....U....-...A....A.A..G....CA..C.U.C.G............................................C..U.UA....U..G.C..G..C...U..A....U......U.U..G.G.....A...UUG.......C...AAGA...GCGC..GGACG........................................................................CC.UG.CU..C..A.U.....C.G.A...CC.A...U..G.GA.G.C.......C...G....A..A.G...UG.U.A..UC.AG.GGGC.A.GAUCAUCGGC...A...UCCAUA....................ACCGU.G..CCAA.UG.A.CU.U....G.AC..GGU..CAA.C.U..G...C.C.U.A.C.A..A...G...G...A...AAAAAAU...UAACCA...AUA...UGCG...CGCCUC..CGGUAAAGAU....................................G.A..C...G.Cg....guC..AC.C.U.U.A.A......C.G.A-
   NZ_OX366344.1     A.G.A..U.A.A..G..G....G....U...G....A.G..G....CU..G.U.G.G............................................C..G.UA....U..G.C..A..A...U..U....U......U.C..A.A.....U...UUG.......C...AAGA...CAGG..GGAAU........................................................................UA.UG.UU..U..A.U.....C.A.A...GC.C...A..C.AG.G.A.......U...A....A..G.G...UA.U.A..UU.GU.GGCA.U.GAUUGUCGGC...C...AGCAUA....................GCCGU.G..ACAA.UG.A.UU.U....G.GA..GAU..AAA.C.G..U...G.C.U.A.A.A..A...G...G...U...AAGCAAU...UAACAA...ACG...UAAG...AGCUUC..AGGUAGUGAU....................................G.A..A...G.C.......C..AU.A.A.A.A.C......U.C.AC


   Structure         (.(.(..(.(.(..(..(....................(..(....((.....................................................)..).)).......(.(..(..(...(..(................(.(.........(((...........((((.....((...............................................................................)).....)..)..).).....).).)...)).....)..).)).).)...................(.(...((.(.(..((..(.((((.........((((.................................))))...........).).)).)..........)))..))).).)......).).).).).)..)...).......................((((..........(((....(((((................................................).)..)...).).......)..))................).).))


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bipA



Position: 1488-1653, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G R R Y Y Y R C Y U U Y R R Y U R C A R G A C G Y G G Y U R U U Y U R R C G R Y G R A R R U U A Y G A R G G Y G R U Y R U Y G G Y R C A Y Y C G Y A A Y G A Y Y U R R Y G U A A C Y Y A R R G G Y A A R A R C U A C Y A A C R U C G Y G C U C G G Y A G A Y G A R G C R Y Y U R Y 5'