ahpF-ahpC



Position: 130-234, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.C) Reactivity: 0C Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.A) Reactivity: 1A Position: 36 (position.label in template: 36.C) Reactivity: 0C Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.A) Reactivity: 0.5A Position: 39 (position.label in template: 39.A) Reactivity: 1A Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.A) Reactivity: 0A Position: 47 (position.label in template: 47.A) Reactivity: 0A Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.A) Reactivity: 0A Position: 52 (position.label in template: 52.A) Reactivity: 0A Position: 53 (position.label in template: 53.A) Reactivity: 0.5A Position: 54 (position.label in template: 54.A) Reactivity: 0.5A Position: 55 (position.label in template: 55.C) Reactivity: 0.5C Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.A) Reactivity: 0.5A Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.A) Reactivity: 0A Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 1A Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.A) Reactivity: 0A Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.A) Reactivity: 0.5A Position: 75 (position.label in template: 75.A) Reactivity: 0A Position: 76 (position.label in template: 76.A) Reactivity: 1A Position: 77 (position.label in template: 77.C) Reactivity: 0.5C Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.A) Reactivity: 0A Position: 81 (position.label in template: 81.U) Reactivity: nanU Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.C) Reactivity: 1C Position: 86 (position.label in template: 86.C) Reactivity: 0C Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.A) Reactivity: 0A Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.C) Reactivity: 1C Position: 95 (position.label in template: 95.A) Reactivity: 0A Position: 96 (position.label in template: 96.A) Reactivity: 0A Position: 97 (position.label in template: 97.A) Reactivity: 0A Position: 98 (position.label in template: 98.A) Reactivity: 0.5A Position: 99 (position.label in template: 99.A) Reactivity: 0.5A Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.A) Reactivity: 0A Position: 107 (position.label in template: 107.C) Reactivity: 0C Position: 108 (position.label in template: 108.C) Reactivity: 0C Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.A) Reactivity: 0A Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.A) Reactivity: 0A Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.C) Reactivity: nanC Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.C) Reactivity: nanC Position: 118 (position.label in template: 118.A) Reactivity: nanA Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.C) Reactivity: nanC Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.A) Reactivity: nanA Position: 123 (position.label in template: 123.A) Reactivity: nanA Position: 124 (position.label in template: 124.A) Reactivity: nanA Position: 125 (position.label in template: 125.A) Reactivity: nanA Position: 126 (position.label in template: 126.C) Reactivity: nanC Position: 127 (position.label in template: 127.A) Reactivity: nanA Position: 128 (position.label in template: 128.C) Reactivity: nanC Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.A) Reactivity: nanA Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.A) Reactivity: nanA Position: 135 (position.label in template: 135.A) Reactivity: nanA Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.U) Reactivity: nanU Position: 146 (position.label in template: 146.3')3' 10 20 30 50 100


ahpF-ahpC



Position: 130-234, Conformation: #0







Retained alignments:


   NC_009792.1       ACUUUUUG........UCGCUAA...AC.GUUC.A.........CAA.C.GU.......UGUCUUGUGU..GAG....U.UGUU..A..GGUAUCGCUGAUUGAUUUGAUAAUGCAAACG..........................CAUUAGC.C.CAAUCACG..GAAAGUUGGUUACUU.UACAUCUCA.ACGAAAAC..A.CG...GAGGAA
   NC_010554.1       GCUACAUU........UCGUUAA...UC.UAUC.U.........CUA.U.CA.......---AUUUAUU..AAA...cU.CAUU..A..GGUAAAACCUAUUGAUAUGAUAGUAGGAAUG..........................UAUUAGA.UaUUCUCAAU..UGGAA-UAGGUACAU.UAG-AUUCA.UACCAAAC..A.-G...GAGGAA
   NC_012912.1       GCCGGGUU........AGGCGGC...GU.UUUU.G.........UCA.U.GG.......UGCUGAUGGC..AAA....A.CGUU..A..GGUAUUGCUUAUUGAUUUGAUAAAGACAACG..........................CAUUAGC.G.ACAAGCGU..CACAUUUCUGUACCU.UACAUUUCA.AGCCAAAC..A.CA...UUGAGA
   NC_014500.1       -----AGG........CGUUUUC...GU.GA--.-.........--U.U.GU.......UCUGCUGGC-..AAA....A.CGUU..A..GGUAUUGCUUAUCGAUUUGAUAAAGACAACG..........................CAUUAGC.G.ACAUACGU..CACAUUUUUGUACCU.UACAUCUCA.AGCCAAAC..A.CA...UUG---
   NC_015968.1       GGCUU-UU........AAUCAUU...CA.GUUC.A.........CAA.G.GU.......UGGUUCGUUC..GGG....U.UGUU..A..GGUAUGGCUGAUUGAUUUGAUAAAGCAAACG..........................CAUUAGC.C.CACUUAAC..GAAAGUUGGUUACCU.UACAUCUCA.ACGAAAAC..A.CG...GAGGAA
   NC_017910.1       ----CUGG........UUACGAU...GG.GUUU.UgcgauaccgCAA.C.GC.......ACUCACAGGU..AAG....U.-GUUauA..GUCAGCGCUUAUCGAUUCGAUACGGUAAACG..........................CAUUGGU.C.CUGAUGAG..GCAAAUUCGUUAUCU.UACGUUCCA.ACGAAACA..A.CG...GAGAAA
   NC_021870.1       GGCUGAAA........GGGCGCA...GU.GUUC.A.........CAA.U.GU.......UGCCCGGAUC..GGG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAUGGAAACG..........................CAUUAGC.C.GAAUCAGA..AAAAUUCCGUUAACU.UACUCCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_AP019007.1     AGGGGCCU........CUUCACA...AG.GUUC.A.........CCA.U.GC.......UGUCUUGUUU..AAG....U.UGUU..A..GGUAUGGCUGAUUGAUUUGAUACAGCAAACA..........................CAUUAGC.C.CCGACGAG..CAAAGUUGGUUACCU.UACAUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_AP019630.1     CAGGCUUU........CCUGUAA...AAgGUUC.A.........CCU.U.GU.......UGUCUUGUCG..ACG....U.UGUA..A..GGUUUGGCUGAUUGAUUUGAUAAAGCAUACG..........................CAUUAGC.C.CCGAUGAA..UAAAGUUGGUUACCU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_AP022508.1     -CUGGGGU.......aCCGCAGC...AG.GUUC.A.........CCU.U.GC.......UGUCUUGUUG..AAG....U.UGUA..A..GGUUUGGCUGAUUGAUUUGAUAAAGCAUACG..........................CAUUAGC.C.CCGAUGAG..CAAAGUUGGUUACCU.UAGCUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_AP023184.1     CCCGGCAA........CGGGUG-...--.GUUUuU.........UUU.U.GC.......-CUGUCGCUC..AGG....U.UGUU..A..GGUUAUACCUUUUGAUUCGAUACAGCCUACC..........................CAUUAGAaC.CAAA-UGC..UUAUAUUCGGUACCU.UUC-UCCCA.UCGCAAA-..A.CG...GAGGAA
   NZ_CP009125.1     -----CCA........GAAUAUG...GA.GAUC.A.........CGU.A.UC.......CCUGAUUCGG..CGU...cA.AGUU..A..GGUAUUACUUAUUGAUUCGAUAAAGACAACG..........................GAUUGGU.G.AUAGCGAU..CACAUUUCUGUACUU.UAGUCACAU.GCGAAAAC..AcAU...GAGGAU
   NZ_CP011602.1     ACGCUCGU........UCAUGUA...CG.GUAC.A.........UUA.A.AC.......AGUUUUGUGC..GAG....U.UGUU..A..GCUAACGCUUAUUGAUUUGAUAAUGCAAACG..........................CAUUAGC.C.GAGUCGGA..AAAAAAUCGUUAACU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP012257.1     UCGCGAGAc......gGCGAGAA...AC.GUUC.A.........CUA.AgGU.......UGGCC--CGGauCGG....U.UGUU..A..GCUAUUGCUUAUUGAUUUGAUAACGCAAACG..........................CAUUGGC.C.UGGGUUAC..GAAAAUUCGAUACCU.UACAUCCCA.UCGAAAAC..A.CG...GAGGAA
   NZ_CP012264.1     UCGCUCCG........GCGAGGA...AA.GUUC.A.........UAA.G.GC.......UGUC--CCGAacAUG....U.UGUU..A..GCUAUUGCUUAUUGAUUUGAUAACGCAAACG..........................CAUUGGC.U.CGGGUUGU..UAAAAUUCGAUACCU.UACGUCCCA.UCGAAAAC..A.CG...GAGGAA
   NZ_CP012266.1     GCCCGUUG........GGGUGAA...AC.GUUC.A.........UAA.G.GU.......UGUC--CCGAacGUG....U.UGUU..A..GCUAUCACUUAUUGAUUUGAUAACGCAAACG..........................CAUUGGC.C.CGGGUUGC..UAAAAUUCGAUACCU.UACGUCCCA.UCGAAAAC..A.CG...GAGGAA
   NZ_CP012268.1     GCCCGUUG........GCGUCAA...AA.GUUC.A.........UAA.G.GU.......UGUC--CCGG..AAGc..gU.UGUU..A..GCUAUCACUUAUUGAUUUGAUAAUACAAACG..........................CAUUGGC.C.CGGGUUGC..UAAAAUUCGAUACCU.UACGUCCCA.UCGAAAAC..A.CG...GAGGAA
   NZ_CP012871.1     GAUAAGCG........UAUAUAA...AG.AUUC.A.........CAA.A.GU.......AAUUCGCCGC..GCA....U.UGUU..A..GCCAGCGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.C.GAAGCGGG..GAAAGUUAGUUACCU.UAGCCCUCA.ACGAAAAC..A.UG...GAGGAA
   NZ_CP013940.1     UCGCGAGAc......gGCGAGAA...AC.GUUC.A.........CUA.AgGU.......UGGCC--CGGauCAG....U.UGUU..A..GCUAUUGCUUAUUGAUUUGAUAACGCAAACG..........................CAUUGGC.C.UGGGUUAC..GAAAAUUCGAUACCU.UACAUCCCA.UCGAAAAC..A.CG...GAGGAA
   NZ_CP013990.1     AAGGUGGC........CUUUUUA...CU.UUUG.U.........UAA.U.CC.......CAUUAUGCGU.c-AGa.cgU.UGUU..A..GGUAUUGCUGAUUGAUUUGAUAAAGCAAACG..........................CAUUAGC.C.CGUUUAUG..AAAAGUUCGUUACCU.UAGCUUUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP014007.2     -UUUUGGC........AAAUCAG...CC.GUUC.A.........CAU.G.GU.......UGCUCGUUAG..GGG....U.UGUU..A..GCUAACGCUUAUUGAUUUGAUAAAGCAAACG..........................CAUUGGC.U.CGAUCAAA..CAAAGUUCGUUAACU.UACACCCCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP014070.2     -----UUG........CGUCGUAg.cAC.GUUC.A.........CAA.C.GU.......UGAAUUGAGA..GGU....U.UGUU..A..GCUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.C.CUGUCAGU..CAAUCUUCGGUAACU.UAUCUCUCA.ACGAAAAC..A.UG...GAGGAA
   NZ_CP015199.1     GAUUCUGGg......cGAUUGAU...AA.GCAG.A.........UGA.A.UA.......-ACUUUGUAA..AUG....A.CUUA..C..AGUUCAA-UUACAAAUUUGACAAAGGAAAUG..........................UAACGGC.A.GGUUUCUA..UAAA--UC-AAACUG.GAAAUCCCA.CCAAUACU..-.-G...GAACUG
   NZ_CP016337.1     ACUUUUGG........CAAUUCA..gCC.GUUC.A.........CAA.G.GU.......UGCUCGUUGU..GGG....U.UGUU..A..GCUAACACUUAUUGAUUUGAUAAAGCAAACG..........................CAUUGGC.U.CAAUCAAU..CGAAGUUCGUUAACU.UACACCCCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP017015.1     GUCAUUGA........UGAUGAA...UA.GUUU.A.........CCA.A.GU.......UAUAGUACUA..AAG....U.UGGU..C..CAGAAAGCUUUGUU-CCAGAUUAUUUAAACG..........................G---GGC.C.CAAAAAUC..AGCUAUUAGUUCAAU.GCUAUUAUA.UAAAUGAC..A.AG...AUGAAA
   NZ_CP017184.1     --CUUUCC........GUUAGUU...CC.GUUC.A.........CAA.G.GU.......UGUCUUGUUG..GCG....U.UGUA..A..GGUUUGGCUGAUUGAUUUGAUAAAGCAUACG..........................CAUUAGC.C.CCGAUGGA..UAAAGUUGGUUACCU.UACAUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP017279.1     UGGCUUUU.......cGUUAAUU...CA.GUUC.A.........UCA.C.GU.......UGUCUUGUUC..GGG....U.UGUU..A..GGUAUGGCUGAUUGAUUUGAUAAAGCAAACG..........................CAUUAGC.C.CACCCGGC..GAAAGUUGGUUACCU.UACAUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP018097.1     AAUGCUGG........CC-UGCA...AA.ACGC.G.........GGU.C.GG.......AUUGGCAGGC..GGU....U.CGCC..G..C----GAUUGAUCGCGUCCACAGCAGCCAUG..........................UUUUGGA.U.GACGCGGC..CAAAAUUGGUGUAGC.GGCGAUCCA.GC-GCAAA..A.CG...CGGGUA
   NZ_CP019659.1     GUCGCUGC........CGAUCAA...AU.GCUG.A.........CAA.A.GA.......UGGUCCAUAC..GGA....U.AUUG..U..GAUCAGUUCGACCGGUUCGA--AUGAAUAUA..........................UAUUGAC.C.AAAUCACAagUGGAACAGGUGAUGG.C---UUCCC.GCAGGAAG..U.CA...CGGCAG
   NZ_CP019706.1     -GGUUGAG........AGCAGAA..uUU.AUCC.A.........UAA.U.AA.......GUAAUGCCUU..AGCu..gU.UGUU..A..GGUUUUACUUAUUGAUUCAAUAAUGGAUACG..........................CAUUAGA.U.--CUCAAUcaCAUUUUUCGGUAACU.UUCACGCUA.AC-CAAUA..-.UG...AAGGAG
   NZ_CP020388.1     --AGGCAG........UUUGUCAaucAG.GUUC.A.........CAG.A.GU.......CGCU--GCGGucGGG....U.UGUU..A..GCUAACGCUUAUUGAUUUGAUAAUGGAAACG..........................CAUUAGC.C.GAAUCAGG..CGAAGUUAGUUACCU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP025003.1     --GGGGGG........CUGCUUC...GU.GAUU.G.........CCC.U.GC.......UGGC------..AAA....A.CGUU..A..GGUAUUGCUUAUCGAUUUGAUACAGACAACG..........................CAUUAGC.G.ACAUGCAU..CACAUUUUUGUACCU.UACAUCUCA.AGCCAAAC..A.C-...---AUU
   NZ_CP026364.1     GCUACAUA........UUGUUAA...CU.UAUC.U.........CUA.U.CA.......---AUUUCUU.cAAC....U.CAUU..A..GGCAAAACCUAUUGAUACGAUAGCGGGAAUG..........................UAUUAGC.UaUUACCAAA..UGGAA-UAGGUACAU.UAGGUCCAU.ACCAAACA..-.-G...GAGGAA
   NZ_CP026377.1     GCCGAAAA........CGAUCCA...UG.CCGU.A.........ACA.A.GAc.....cUUA-----UU..GUC....U.UGUU..A..GGUUUUACUUAUUGAUUCAAUAAUGGAUACG..........................CAUUAGA.U.CUUAAUCA..CAUUUUUCGGUAACU.UUCACGCUA.ACCCAAU-..A.UG...GAGGAG
   NZ_CP027986.1     GGGCUUUA........GUUUAUU...CA.GUUC.U.........UAA.C.GU.......UGUCUUGAUU..GGG....U.UGUU..A..GGUUUGGCUGAUUGAUUUGAUAAAGCAUACG..........................CAUUAGC.C.CCGAUGGA..UAAAGUUGGUUACCU.UACAUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP028271.1     GCCGCAGA........AGGCCGA...AA.ACAC.A.........CCA.U.UAcgauaucAAUCGCUGAC..AGC....U.UGUU..A..GGUUUUACUUAUUGAUUCGAUAAUGGAUACG..........................CAUUAGA.U.C-UUCAUC.aCGUUUUUCGGUAACU.UUCACGCUA.ACCCAAAU..-.-G...GAGGAA
   NZ_CP031560.1     -----GGG........GGGUGCC..uUC.GUG-.A.........U--.U.GC......cUUACUG-G--.cAAA....A.CGUU..A..GGUAUCGCUUAUCGAUUUGAUACAGACAACG..........................CAUUAGC.G.AUAUACGU..CACAUUUUUGUACCU.UACCUCUCA.AGCCAAAC..A.CA...---CUA
   NZ_CP032487.1     CAUGCCUU........CAUGGUG...UC.AUUA.U.........UGU.G.CU.......UCGUCUAUGU..UGG....U.UUCU.aU..UUUUGGGGUGAA-------------------cugcgcaauaaacagcgggucaaugc-------.-.------GG..CAACAUUGGCAAAUAaUGAAUCCUA.ACGAAAC-..G.GG...GAGUAA
   NZ_CP033744.1     ----CUUU........UUUACUU...UU.GUCU.U.........UUA.G.GU.......UCGAUUGAGU..AAG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.C.CUGCUAAG..AGAUUUUCGUUAACU.UAUCUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP033844.1     ---CAUCG........CGUUGAC...AG.GUUC.A.........CAA.A.GU.......UGUCUUGUUC..CGG....U.UGUU..A..GAUAACGCUUAUUGAUUCGAUAAUGCAAACG..........................CAUUGGU.C.GAGUCAGG..AAAAAUUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP033920.1     GAUUCUGGg......cUAUUGAU...AA.GCAG.A.........UGA.A.UA.......-AUUUCGUUA..AUG....A.UUUA..C..AGUUGAA-UUAUAAAUUUGAUAAAGGAAGUG..........................UGACGGC.A.GGUUUCUA..UAAA--UC-CAACUG.GAAAUCUCA.UCAAUAUU..-.-G...GAACUG
   NZ_CP033926.1     GAUUCUGGg......cAAUUGAU...AA.GCAG.A.........UGA.A.UA.......-ACUUUGUGA..AUG....A.UCUA..C..AGUUUAA-UUACAAAUUUGAUAAGGGAAAUG..........................UAACAGC.A.GGUUUUUA..UAAA--UC-AAACUG.GAAAUCCCA.UCAAUACU..-.-G...GAACUG
   NZ_CP033932.1     ----CUGGg......cUAUAGAU...AA.GCAG.A.........UGA.A.UA.......-AUUUUGUGA..AUG....A.CCUG..C..AGUUCAACUA-CAAAUUCGAUAAAGGGAAUG..........................UAACGGC.C.GGAUUUUA..UAAAU---CAAACUG.GAAAUCCCA.UCAAUACU..-.-G...GAACUG
   NZ_CP034035.1     --------........--AAUAA...CU.GUCC.A.........UAA.U.AGg....ccCGGCGUAUCG..CUA....A.-GUA..A..GGUAUUACUUAUCGAUUCAAUAAUGACAACG..........................GAUUGGU.G.AUGUCGGU..CACAAUUCUGUACUU.UACACCUCA.UGUAAACAcaC.AU...GAGGAU
   NZ_CP034938.1     -----UGAgga.gaacUUGGAGA...UA.GCGU.A.........UCC.C.UG.......AUUUUACACU..ACG....U.---U..A..GGUAUUACUUAUUGAUUCGAUAAAGACAACG..........................GAUUGGU.G.AUAACGAU..CACGUUUCUGUACUU.U-AGCCACA.UGCGAAAA..C.AC...AUGAGG
   NZ_CP036175.1     UGCGAUCG........CAUUGAU...AG.GUUC.A.........CAA.A.GU.......UGUCUUGUUC..CGG....U.UGUU..A..GAUAACGCUUAUUGAUUUGAUAAUGCAAACG..........................CAUUGGU.C.GAGUCAGG..AAAAAUUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP037864.1     -UACUUUU........GUCUUUU...AG.GUUC.-.........---.G.AU.......UGA-UUGAGU..GAG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.C.CUGCUAAG..CAAUUUUCGUUAACU.UAUCUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP038469.1     -UUACUUU........UGG-CUA...CG.GUUU.A.........ACA.C.CA.......UUUGUUGAGU..CGG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................GAUUAGC.C.CUGAUAAA..CGAUUUUCGUUAACU.UAUCCCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP038498.1     ---GGGGU........CAGAAUAu.gGA.GAUC.A.........CCU.A.UCcc...ugAUUUUAGUCG..CGU....U.AGUU..A..GGUAUUACUUAUUGAUUCAAUAAAGACAACG..........................AAUUGGU.G.AUAACGAU..CACGUUUCUGUACUU.UAGCCACAU.GCAAAAACac-.AU...GAGGAU
   NZ_CP040392.1     -UUUUGGC........AAAUCAG...CC.GUUC.A.........CAU.G.GU.......UGCU---CGU.uAGGg..uU.UGUU..A..GCUAACGCUUAUUGAUUUGAUAAAGCAAACG..........................CAUUGGC.U.CGAUCAAA..CAAAGUUCGUUAACU.UACACCCCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP040428.1     -UGCGCGA........GCAUUCC...CU.GUUG.U.........UGC.C.AA.......UGAAUUACUGgcUGG....C.UGAU..A..GAUAUCGCUUAUCAAUUCAAUAACACAAACG..........................GAUUGGA.U.GAAGCGGC..AGAGAUUCGAUACCU.UAUACCCCA.UCGAAACC..A.CG...GAGGAA
   NZ_CP041247.1     GCGAUCG-........UCGCGAC...GG.GUUC.A.........CAA.A.GC.......UGUCUUGUUC..CGG....U.UGUU..A..GAUAUUGCUUAUUGAUUUGAUAAUGCAAACA..........................CAUUGGU.C.GAAUCAGC..AAAAGUUCGUUACCU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP041660.1     GGCCAAUCa......aGGACGCA...AA.GCUU.U.........AAA.A.AU.......UGAAUG----..-GG....A.-UUU..G..GGCGAAAAUAAAGAUUUCGAAAGUGAAAGUG..........................CAUUUGC.U.GAUAUGGC..AAAA----AUCGCGC.AAAGUCC--.AGCCAAAC..G.CA...GUGCAG
   NZ_CP041925.1     CGCGAUCG........CGAAGGC...AG.GUUC.A.........CAA.A.GU.......UGUCUUGUUA..CGG....U.UGUU..A..GAUAACGCUUAUUGAUUUGAUAAUGCAAACG..........................CAUUGGU.C.GAGUCAGG..AAAAAUUCGUUAACU.UAGACCUCA.ACAAAAAC..A.CG...GAGGAA
   NZ_CP043318.1     UGGGCCUU........CCAUUAAu.uCA.GUUC.A.........CCA.C.GU.......UGUCUUGUUG..GCG....U.UGUA..A..GGUUUGGCUGAUUGAUUUGAUAAAGCAUACG..........................CAUUAGC.C.CCGAUGGA..UAAAGUUGGUUACCU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP043342.1     CAGGCUUU........CCUGUUC..aAG.GUUC.A.........CCU.U.GC.......UGUCUUGUUG..AGG....U.UGUA..A..GGUUUGGCUGAUUGAUUUGAUAAAGCAUACG..........................CAUUAGC.C.CCGAUGAG..UAAAGUUGGUUACCU.UACCUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP044098.1     UUUACUUU........UAUCUUU...AG.GUUC.A.........CAA.C.AU.......GAGUUUGAGU..GGG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.C.CUGCGAAG..AGAUUUUCGUUAACU.UAUCUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP044101.1     ----CUUU........UUUACUU...UU.GUCU.U.........UUA.G.GU.......UCGAUUGAGG..AAG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.C.CUUGGAAG..AGAUUUUCGUUAACU.UAUCUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP044218.1     --CGCCGG........CGGUGCA...UA.UGGA.U.........UGA.G.GCa....auCGGCAGUCGG..CAG....U.CGGC..A..GUCGGAACUUACUGGUGAGAAAUUGGCUAGG..........................CAU-GGU.CgAAAUCAGC..CAUUAUUUUCCGACU.GCCGACU-G.CCG--ACU..G.CC...GACUGC
   NZ_CP045300.1     ACUUUCGG........CAGAUCA..gUC.GUUC.A.........CAU.G.GU.......UGCU-CGUUA..AGG....UcUGUU..A..GCUAACGCUUAUUGAUUUGAUAAAGCAAACA..........................CAUUGGC.C.CUAUCAAA..CAAAGUUCGUUAACU.UACACCCCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP045783.1     AGCGCUGAa.....cgCGUCGAC...AG.GUUC.A.........CAG.A.GU.......UGUCUUGUUC..CGG....U.UGUU..A..GAUAACGCUUAUUGAUUCGAUAAUGUAAACG..........................CAUUGGU.C.GGGUCAGG..AAAAAUUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP045845.1     GUGCCUGUc......cCCAUCAU...AG.GUUC.A.........CAA.A.GU.......UGUUCUGUUC..CGG....U.UGUU..A..GGUAACGCUGAUUGAUUUGAUAAUGUAAACG..........................CAUUGGU.C.GAAUCGGG..AAAAGUUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP047349.1     GCUACAUU........UCGUUAA...CC.UAUC.U.........CUA.U.CA.......---AUUUCUU.cAAC....U.CAUU..A..GGUAAAACCUAUUGAACUGAUAGCAGGAAUG..........................UAUUAGC.UaUUCUCAAG..UGGAA-UAGGUACAU.UAG-ACCCAuACCAAACA..-.-G...GAGGAA
   NZ_CP047495.1     -----CCA........GAAUAUG...GA.GGUC.A.........CGU.A.UCc....cuGAUUCUGCGU.cAAG....U.---U..A..GGUAUUACUUAUUGAUUCGAUAAAGACAACG..........................GAUUGGU.G.AUAGUGAU..CACAUUUCUGUACUU.U-AGCCACAuGCGAAAAC.aC.AU...GAGGAU
   NZ_CP049608.1     GGGCACCG........GCUUUAU...AU.GCUC.A.........GCG.U.GAa....caCGUCCGAGAG..GGG....U.UGUU..A..GUUAUCGCUUAUUGAUUUGAUAAAGCAAACG..........................CAUUGGC.C.CUGAGAGG..GGAGAUUCGUUAACU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP050508.1     GCGACUUG........UCCCGAC...GG.GUUC.A.........CAA.A.GU.......UGUCUUGUUG..CGG....U.UGUU..A..GAUAUUGCUUAUUGAUUUGAUAAUGCAAACG..........................CAUUGGU.C.GGGUCAGG..AAAAAUUCGUUACCU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP051548.1     AUGCACGU........UCAUGUU...CG.GUAC.A.........UUA.A.GC.......AGUUUUGUGC..GGG....U.UGUU..A..GCUAACGCUUAUUGAUUUGAUAAUGCAAACG..........................CAUUAGC.C.GAAUCGGA..AAAAAAUCGUUAACU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP051652.1     -------U........AUGGAGA...UA.GCGU.A.........UCC.C.UG.......AUUUUACGCU..ACG....U.---U..A..GGUAUUACUUAUUGAUUCGAUAAAGACAACG..........................GAUUGGU.G.AUAGCGAU..CACGUUUCUGUACUU.U-AGCCACA.UGCGAAAA..C.AC...AUGAGG
   NZ_CP054058.1     GCCUUUUU........ACGUUCU...GG.GUUC.A.........UGAaA.AU.......CGUU--GCGU..CGG...uU.UGUU..A..GCUAACGCUUAUUGAUUUGAUACGGGAAACG..........................CAUUGGC.C.CGUUGAAU..CAAAGUUAGUUAACU.UACCUCUCA.ACGACAAC..A.CG...GAGGAA
   NZ_CP055292.1     GCCGCUGG........CGGUGCA...AA.GUUC.A.........CAA.A.GU.......UGUCUUACGA..AGG....U.UGUA..A..GGUAAAACUUAUCGAUUUGAUAAUGGAAACG..........................CAUUAGC.C.GAAUCGGC..AAAAAUUGGUUACCU.UACAUCUCA.UCGAAAAC..A.CG...GAGGAA
   NZ_CP059690.1     GCUACAUU........UAGUUAA...CC.UAUC.U.........CUA.U.CA.......-A--UUUCUU.cAAC....U.CAUU..A..GGUAAAACCUAUUGAACUGAUAGUAGGAAUG..........................UAUUAGC.UaUUCUCAAG..UGGAA-UAGGUACAU.UAGUUCCCA.UACCAAAC..A.-G...GAGGAA
   NZ_CP063425.1     ACUUUUGG........CAAUUCA..gCC.GUUC.A.........CAA.G.GU.......UGCUCGUUGU..GGG....U.UGUU..A..GCUAACACUUAUUGAUUUGAUAAAGCAAACG..........................CAUUGGC.U.CAAUCAAU..CGAAGUUCGUUAACU.UACAUCCCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP065044.1     --CGUUUUu......gUCCUGCA...AC.UCGA.A.........UUA.U.UU.......AGGGUAUAGC..UAG....U.----..A..GGUAUUGCUUAUUGAUUCGAUAAAGACAACG..........................GAUUGGU.G.AUAGCGAU..CACAUUUCUGUACUU.-UAGCCACAuGCGAAAAC..A.-C...AUGAGG
   NZ_CP065534.1     ----CGUA........CUUACUU...CC.CAUC.U.........CGA.C.GU.......-GUCGUUAUC..---....A.UGCA..A..GGUAUCGCUGAUUGAUUCGAUAACGACAACG..........................CAUUAGC.C.CGUCGUGG..CGCACUUCUGUACCU.UAG-CCCCA.UA-CCAAC..A.CGcauGAGGAU
   NZ_CP065589.1     GUUUCUGGg......cAAUUGAU...AA.GCAG.A.........UGA.A.UA.......-AUUUUGUGA..AUG....A.UUUA..C..AGUUCAACUA-UAAAUUUGACAAAGGAAAUG..........................UAACGGC.C.GGAUUUUA..UAAAU---CAAACUG.GAAAUCCCA.UCAAUACU..-.-G...GAACUG
   NZ_CP065838.1     AGCGCUGAa.....cgCGUCGCC...AG.GUUC.A.........CAA.A.GU.......UGUCUUGUUC..CGG....U.UGUU..A..GAUAACGCUUAUUGAUUCGAUAAUGUAAACG..........................CAUUGGU.C.GGAUCAGG..AAAAAUUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP070290.1     GCCUGUGG........CGGUGCA...AA.GUUC.A.........CAA.A.GU.......UGUCUUGAGG..UGG....U.UGUA..A..GGUAAAACUUAUCGAUUUGAUAAUGGAAACA..........................CAUUAGC.U.GAAUCGAA..UGAAUUGCGUUACCU.UAA-UCCCA.UCGAAAAC..A.CG...GAGGAA
   NZ_CP071070.1     UACGUUGG........AUUGUUC...AG.GUUC.A.........CCA.C.GU.......UGGUGAGAGA..AGG....U.UGUU..A..GCUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.C.CUGUCAGU..CAUUUUUCGUUACCU.UACAACUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP071383.1     GCCUUUUU........ACGUUUA...AG.GGUU.G.........AUA.A.CC.......GGUUUCAGGU..GGG....U.UGUU..A..GGUAUGGCUGAUUGAUUUGAUAACGCCUACC..........................CAUUAGC.C.CCGAUGAG..CAAAGUUGGUUACCU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP073236.1     ---CAUCG........CGUUGAC...AG.GUUC.A.........CAA.A.GU.......UGUCUUGUUU..CGG....U.UGUU..A..GAUAACGCUUAUUGAUUCGAUAAUGCAAACG..........................CAUUGGU.C.GAGUCAGG..AAAAAUUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP074352.1     --AGCCAU........UUUUG--...UC.CGUC.G.........CAA.A.GC.......AUACGGGUAA..AGG....U.UGUU..A..GCUAUCGCUUAUUGAUUUGAUAAUGCAAACG..........................CAUUAGC.A.GCAGCGAG..AGAAUUUCGAUACCU.U-UAUCCCA.UCGAAACC..A.CG...GAGGAA
   NZ_CP077262.1     UUUACUUU........UAGAAUA...GG.GUUU.A.........CAA.C.AU.......GCGGUUGAGU..CGG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.CcUUAUCAAU..GA-UUUUCGUUAACU.UAUCCCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP077392.1     CAGGCUUU........CCUGUAA...AAgGUUC.A.........CCU.U.GC.......UGUCUUGUUG..CUG....U.UGUA..A..GGUUUGGCUGAUUGAUUUGAUAAAGCAUACG..........................CAUUAGC.C.CCGAUGAA..CAAAGUUGGUUACCU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP082833.1     ACUAUGGG........UCGUAGU...AU.GUUC.A.........UCA.C.GU.......UGGUGAAAAA..CGG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAAAGAAACG..........................CAUUAGC.C.CUGUCAGU..CAUUUUUCGUUAACU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP083638.1     GCCACUGG........CGGUGCA...AA.GUUC.A.........CAA.A.GU.......UGUCUUACGA..CGG....U.UGUA..A..GGUAAAACUUAUCGAUUUGAUAAUGGAAACG..........................CAUUAGC.C.GAAUCGGC..AAAAAUUGAUUACCU.UACAUCUCA.UCGAAAAC..A.CG...GAGGAA
   NZ_CP083760.1     ACCAUUGG........CGAUGAC...GU.GAU-.-.........--G.U.UU.......GCCCAAAAUG..UGG....U.UUUG..UccGGUUUAAAUCAUGGGUAUGAAGAUGUAAAUG..........................UACCUCC.C.A-GCCUGC..AAAAAGUGGAAACC-.-AAACCCAU.UAUUGUGG..A.-G...GAUGAA
   NZ_CP084874.1     AGCGCUGAa.....cgCGUCGAC...AG.GUUC.A.........CAG.A.GU.......UGUCUUGUUC..CGG....U.UGUU..A..GAUAACGCUUAUUGAUUCGAUAAUGUAAACG..........................CAUUGGU.C.GGGUCAGG..AAAAAUUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP087392.1     --AUUUUUa.....auAUACCGA...GU.GCGC.C.........UGA.C.GU.......AGCAGAUCGC..AAG....U.---U..A..GGUAUUGCUUAUUGAUUCGAUAAAGACAACG..........................GAUUGGU.G.AUAGCGAU..CACAUUUCUGUACUU.U-AGCCACAuGCGAAAAC..A.CA..uGAGGAU
   NZ_CP087880.1     -------U........CAUUUUC...AG.GUUC.A.........CAA.U.GU.......UGUCUUGAGU..CGG....U.UGUA..A..GGUAACGCUUAUUGAUUUGAUAAUGGAAACG..........................CAUUGGC.C.CUAUCAAC..CAAAUUUCGUUAACU.UACAACUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP091779.1     GGGCUUUU........GUUUAUU...CA.GUUC.A.........CAA.C.GG.......UGUCUUGUUC..AGG....U.UGUA..A..GGUUUGGCUGAUUGAUUUGAUAAAGCAUACG..........................CAUUAGC.C.CCGAUGAG..CAAAGUUGGUUACCU.UACAUCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP093332.1     CCCGGCAA........CGGGUG-...--.GUUU.U.........UUU.U.GC.......-CUGUGACUU..AAG....U.UGUU..A..GGUAAAACUUAUCAAUUCGAUACAGCCUACC..........................CAUUAGA.G.UCUGGCAC..GAAUAUUCGGUACCU.UUC-UCCCA.UCGCAAA-..A.CG...GAGAAA
   NZ_CP093334.1     GCGAUUG-........UCGCGAC...GG.GUUC.A.........CAA.A.GC.......UGUCUUGUUC..CGG....U.UGUU..A..GAUAUCGCUUAUUGAUUUGAUAAUGCAAACG..........................CAUUGGU.C.GAAUCAGG..AAAAGUUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP096201.1     ---AUUGUgcgcacucUCAACAU...GG.GUUC.A.........CAA.A.GC.......UGUCUUGUUC..CGG....U.UGUU..A..GAUAACGCUUAUUGAUUUGAUAAUGUAAACG..........................CAUUGGU.C.GAAUCAGG..AAAAAGUCGUUAACU.UAGACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP100494.1     GUGUC-GC........ACAUGCU...CA.GCAC.A.........AAA.A.G-.......-GUCU-AAGC.cGGG....U.UGUU..A..GUUAUUGCUUAUUGAUUUGAUAACGCCAACC..........................CAUUAGC.G.AUGAUGGU..UCAGAUUCGUUAACU.UACACCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_CP107077.1     --UUUUGG........CUAAUGU...CU.GUUC.A.........CAG.A.GU.......UGUUCGUUGG..CGG....U.UGUU..A..GCUAACGCUUAUUGAUUUGAUAAUGCAAACG..........................CAUUAGC.C.GUCGUAAG..CAAAGUUCGUUAACU.UAUGCCCCA.ACGAAAAC..A.CG...GAGGAA
   NZ_LR134201.1     CACCCUCGca...acgGGUGGC-...--.CUUU.U.........UUA.U.GC.......CCGC-AGAAA..AGG....C.UGUU..A..GGAAAUACCUCUUGAUUCAAUAAAGCCUACC..........................CAUUAGU.-.GACCCAGC.uCAAAGUUCGGUACCU.UUC-UCCCA.UCGCAAA-..A.CG...GAGGAA
   NZ_LR134386.1     GGUUCUGGg......cGAUUGAU...AA.GCAG.A.........UGA.A.UA.......-AUUUUGUGA..AUG....A.UUUA..C..AGUUCAA-UUAUAAAUUCGACAAGGGAAAUG..........................UAACGGC.C.GGAUUUUA..UAAA--UC-AAACUG.GAAAUCCCA.UCAAUACU..-.-G...GAACUG
   NZ_LR134485.1     UUUACUUU........UAGAAUA...GG.GUUU.A.........CAC.C.AU.......GCGGUUGAGU..CGG....U.UGUU..A..GUUAACGCUUAUUGAUUUGAUAAAGGAAACG..........................CAUUAGC.CcUUAUCAAU..GA-UUUUCGUUAACU.UAUCCCUCA.ACGAAAAC..A.CG...GAGGAA
   NZ_LT615367.1     GCCGGGCU........CGGCGGG...CU.GUUU.G.........UCA.U.--......cAGCCUG----.cUGGcgaaA.CGUU..A..GGUAUUACUUAUUGAUUCGAUACGGACAACG..........................CAUUAGC.G.ACAUCAGU..CACAUUUUUGUACCU.UACAUCCCA.AGCCAAAC..A.CA...UUGGAA


   Structure         ((((............))))..........(((.................((........((.((.(((...((......((((..(..(((((...((.((((((((.(((((................................)))))...).)))))))...)).......)))))).)))).))...))))).))..).).......)))


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ahpF-ahpC



Position: 130-234, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R Y Y Y Y R R R U Y R U Y A G U R C U A U Y G A U U Y G A U A A G A C G Y A U U R G Y Y R R R R U U U A Y U U R Y C Y C A C A A R R G G A G R A R 5'